Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99603 * 2 1 4 4 H 1.48501 * 109.47038 * 269.99746 * 3 2 1 5 5 H 1.48496 * 109.47422 * 30.00038 * 3 2 1 6 6 H 1.48499 * 109.47085 * 150.00256 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 196.88456 * 7 2 1 9 9 N 1.36930 * 119.99851 * 17.17041 * 7 2 1 10 10 C 1.47081 * 120.88401 * 26.56538 * 9 7 2 11 11 C 1.53699 * 108.27591 * 128.75852 * 10 9 7 12 12 N 1.46901 * 109.25614 * 54.08541 * 11 10 9 13 13 C 1.46898 * 110.99711 * 172.60682 * 12 11 10 14 14 C 1.50702 * 109.47650 * 314.29968 * 13 12 11 15 15 C 1.33728 * 122.07520 * 94.99718 * 14 13 12 16 16 S 1.76250 * 108.21575 * 180.02562 * 15 14 13 17 17 C 1.76172 * 89.83918 * 0.02562 * 16 15 14 18 18 C 1.47872 * 125.47461 * 179.97438 * 17 16 15 19 19 C 1.39543 * 120.14211 * 179.69235 * 18 17 16 20 20 C 1.37970 * 119.85578 * 179.76762 * 19 18 17 21 21 C 1.38350 * 120.14165 * 0.49798 * 20 19 18 22 22 C 1.38359 * 120.28521 * 359.78060 * 21 20 19 23 23 C 1.37961 * 120.14181 * 359.96006 * 22 21 20 24 24 N 1.30229 * 109.05380 * 359.73805 * 17 16 15 25 25 C 1.46900 * 111.26621 * 296.75609 * 12 11 10 26 26 C 1.47086 * 120.88084 * 206.85031 * 9 7 2 27 27 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.63185 * 248.52760 * 10 9 7 29 29 H 1.08998 * 109.62646 * 9.11111 * 10 9 7 30 30 H 1.09000 * 109.64977 * 294.07914 * 11 10 9 31 31 H 1.09005 * 109.44272 * 173.96322 * 11 10 9 32 32 H 1.09004 * 109.47314 * 74.30140 * 13 12 11 33 33 H 1.09001 * 109.46821 * 194.29764 * 13 12 11 34 34 H 1.08002 * 125.88876 * 0.02812 * 15 14 13 35 35 H 1.07999 * 120.07435 * 0.03095 * 19 18 17 36 36 H 1.08002 * 119.93002 * 180.25518 * 20 19 18 37 37 H 1.07991 * 119.85917 * 179.76465 * 21 20 19 38 38 H 1.07995 * 119.92564 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.07312 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.49350 * 303.14487 * 25 12 11 41 41 H 1.08999 * 109.49121 * 183.06761 * 25 12 11 42 42 H 1.08998 * 109.62394 * 350.89040 * 26 9 7 43 43 H 1.09003 * 109.62806 * 111.27869 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0554 -1.2221 0.2722 9 7 1.3715 -2.3617 -0.3490 10 6 0.2076 -2.3409 -1.2481 11 6 0.4531 -3.3537 -2.3778 12 7 0.7626 -4.6656 -1.7936 13 6 0.8319 -5.7015 -2.8329 14 6 -0.3440 -5.5580 -3.7645 15 6 -0.2634 -4.8717 -4.9094 16 16 -1.8352 -4.9387 -5.7038 17 6 -2.4600 -5.9117 -4.3746 18 6 -3.8396 -6.4328 -4.2672 19 6 -4.2147 -7.2005 -3.1639 20 6 -5.5049 -7.6797 -3.0673 21 6 -6.4231 -7.4093 -4.0662 22 6 -6.0559 -6.6536 -5.1655 23 6 -4.7704 -6.1641 -5.2715 24 7 -1.5101 -6.1025 -3.5044 25 6 2.0052 -4.6207 -1.0114 26 6 1.8271 -3.6605 0.1695 27 1 -0.4850 0.8400 0.0004 28 1 -0.6889 -2.6172 -0.6930 29 1 0.0879 -1.3427 -1.6691 30 1 1.2905 -3.0222 -2.9917 31 1 -0.4418 -3.4325 -2.9953 32 1 1.7579 -5.5891 -3.3968 33 1 0.8077 -6.6863 -2.3663 34 1 0.6137 -4.3640 -5.2828 35 1 -3.4979 -7.4154 -2.3852 36 1 -5.7977 -8.2705 -2.2119 37 1 -7.4307 -7.7899 -3.9878 38 1 -6.7772 -6.4464 -5.9421 39 1 -4.4851 -5.5740 -6.1299 40 1 2.8210 -4.2714 -1.6443 41 1 2.2358 -5.6182 -0.6375 42 1 2.7786 -3.5350 0.6861 43 1 1.0849 -4.0595 0.8609 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054993005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = 111.004597 kcal Electronic energy + Delta-G solvation = -24953.389997 eV Core-core repulsion = 21512.270185 eV Total energy + Delta-G solvation = -3441.119812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.126 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.13949 -39.09161 -37.66709 -34.48846 -32.60336 -31.30889 -31.16585 -29.91445 -29.46657 -27.54514 -25.51909 -24.44553 -22.88473 -22.61528 -22.42435 -21.33629 -19.20504 -19.09708 -18.00913 -16.95348 -16.66721 -15.87055 -15.50494 -15.04044 -14.84760 -14.63153 -14.28775 -14.07103 -13.84418 -13.66443 -13.45556 -13.18247 -13.07723 -13.02193 -12.79324 -12.67865 -11.81013 -11.60345 -11.44859 -11.33868 -11.17405 -11.04551 -10.74634 -10.45453 -10.28581 -10.04593 -9.93727 -9.70393 -9.68066 -9.58465 -9.26426 -9.18313 -8.48341 -8.24455 -7.75367 -6.63895 -5.75285 -3.16881 0.16305 1.17312 1.24557 1.41168 1.64438 2.82118 3.38733 3.45382 3.46936 3.65123 3.82700 4.49640 4.56262 4.65349 4.70079 4.79416 4.91852 5.12690 5.20635 5.28597 5.31309 5.41282 5.47603 5.56062 5.63664 5.73641 5.83483 5.92468 6.01005 6.04251 6.16977 6.21275 6.25251 6.27104 6.30326 6.35170 6.56543 6.68708 6.72884 6.96938 7.27435 7.58684 7.68356 7.73314 7.76516 7.84411 8.46090 9.23625 9.87240 10.46393 11.33313 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.002887 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.848792 B = 9695.493372 C =10017.310671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.181 3.819 11 C 0.035 3.965 12 N -0.523 5.523 13 C 0.124 3.876 14 C 0.088 3.912 15 C -0.240 4.240 16 S 0.078 5.922 17 C 0.110 3.890 18 C -0.021 4.021 19 C -0.070 4.070 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.100 4.100 24 N -0.439 5.439 25 C 0.046 3.954 26 C 0.149 3.851 27 H 0.253 0.747 28 H 0.025 0.975 29 H 0.087 0.913 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 -15.955 -12.988 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.055 3.945 11 C -0.094 4.094 12 N -0.249 5.249 13 C -0.006 4.006 14 C -0.045 4.045 15 C -0.380 4.380 16 S 0.334 5.666 17 C -0.165 4.165 18 C -0.025 4.025 19 C -0.091 4.091 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.120 4.120 24 N -0.152 5.152 25 C -0.084 4.084 26 C 0.022 3.978 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.194 0.806 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.639 -15.771 -13.152 22.685 hybrid contribution 1.824 1.197 -0.125 2.185 sum -7.815 -14.573 -13.277 21.207 Atomic orbital electron populations 1.70039 1.05194 1.25420 1.54065 1.25038 0.95306 0.98350 1.01101 0.86287 0.79094 0.83767 0.77615 1.21557 1.21740 1.20464 1.19202 0.92561 0.84812 1.41524 0.91620 1.44155 1.34373 1.01313 1.52037 1.20927 0.88936 0.96373 0.88289 1.23041 0.98418 0.89325 0.98636 1.62084 1.34757 1.05548 1.22476 1.20724 0.90917 0.97959 0.91014 1.19986 0.93596 0.96625 0.94309 1.26858 1.01728 1.09025 1.00383 1.84726 1.05316 1.50792 1.25730 1.25793 0.96965 1.00478 0.93242 1.17844 0.88371 0.99737 0.96547 1.21359 0.96485 0.94662 0.96633 1.21174 0.93145 1.00380 0.99237 1.21316 0.99644 0.97786 0.93951 1.21011 0.95737 0.98459 0.98608 1.21158 0.93383 0.99628 0.97831 1.66304 0.99538 1.21639 1.27742 1.22641 0.89229 0.99608 0.96876 1.20968 0.97837 0.86462 0.92515 0.93644 0.95655 0.89496 0.95868 0.92371 0.93814 0.89505 0.80558 0.84434 0.85337 0.85711 0.85450 0.85822 0.95328 0.91816 0.92544 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 11.16 55.49 0.62 -26.20 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -7.05 9.63 -15.06 -0.15 -7.20 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 9 N -0.60 -15.53 3.03 -171.73 -0.52 -16.05 16 10 C 0.18 4.58 5.45 -3.36 -0.02 4.56 16 11 C 0.03 0.72 4.95 -3.46 -0.02 0.70 16 12 N -0.52 -9.86 4.77 -235.46 -1.12 -10.98 16 13 C 0.12 1.92 5.69 -4.98 -0.03 1.89 16 14 C 0.09 1.35 4.72 -84.40 -0.40 0.95 16 15 C -0.24 -3.27 9.60 29.15 0.28 -2.99 16 16 S 0.08 0.94 22.40 -107.50 -2.41 -1.46 16 17 C 0.11 1.55 7.35 -14.29 -0.11 1.44 16 18 C -0.02 -0.26 5.87 -104.98 -0.62 -0.88 16 19 C -0.07 -0.81 9.68 -39.19 -0.38 -1.19 16 20 C -0.12 -1.11 10.03 -39.64 -0.40 -1.51 16 21 C -0.11 -0.87 10.04 -39.50 -0.40 -1.27 16 22 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 23 C -0.10 -1.00 9.61 -39.20 -0.38 -1.38 16 24 N -0.44 -6.98 10.11 -7.55 -0.08 -7.06 16 25 C 0.05 0.84 5.58 -3.70 -0.02 0.82 16 26 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 1.17 5.74 -51.93 -0.30 0.87 16 32 H 0.04 0.61 8.02 -51.93 -0.42 0.20 16 33 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.14 1.67 7.82 -52.49 -0.41 1.26 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.12 1.08 7.30 -52.49 -0.38 0.69 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 42 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -32.00 362.45 -12.22 -44.22 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.01 Total: -0.64 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.13 Total: -4.26 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -1.10 Total: -60.30 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.41 Total: -1.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.00 -12.22 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054993005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.220 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds