Wall clock time and date at job start Tue Mar 31 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38141 * 126.31836 * 2 1 4 4 C 1.47338 * 126.41589 * 0.05754 * 3 2 1 5 5 O 1.21630 * 120.00098 * 353.44532 * 4 3 2 6 6 N 1.34782 * 119.99576 * 173.44884 * 4 3 2 7 7 C 1.36976 * 120.00001 * 4.22906 * 6 4 3 8 8 H 1.07998 * 120.00212 * 300.07963 * 7 6 4 9 9 C 1.38980 * 119.99937 * 120.08644 * 7 6 4 10 10 N 1.31413 * 119.99550 * 1.68608 * 9 7 6 11 11 Si 1.86793 * 120.00141 * 181.69010 * 9 7 6 12 12 H 1.48500 * 109.47298 * 89.99603 * 11 9 7 13 13 H 1.48497 * 109.47177 * 209.99896 * 11 9 7 14 14 H 1.48501 * 109.46972 * 329.99794 * 11 9 7 15 15 C 1.46502 * 119.99313 * 184.22881 * 6 4 3 16 16 C 1.53000 * 117.49384 * 182.81052 * 15 6 4 17 17 C 1.52999 * 117.49592 * 114.15448 * 15 6 4 18 18 C 1.41358 * 107.16414 * 180.02562 * 3 2 1 19 19 N 1.30477 * 108.06750 * 359.71781 * 18 3 2 20 20 N 1.34546 * 126.31140 * 180.02562 * 2 1 3 21 21 C 1.40202 * 125.77193 * 359.96597 * 20 2 1 22 22 C 1.38838 * 120.04330 * 145.00118 * 21 20 2 23 23 C 1.38104 * 119.95931 * 180.02562 * 22 21 20 24 24 C 1.38493 * 120.03963 * 0.27461 * 23 22 21 25 25 F 1.35094 * 119.95828 * 179.72539 * 24 23 22 26 26 C 1.38495 * 120.08145 * 359.44606 * 24 23 22 27 27 C 1.38097 * 120.04316 * 0.55341 * 26 24 23 28 28 H 1.09000 * 109.47459 * 269.98470 * 1 2 3 29 29 H 1.08998 * 109.47038 * 29.98290 * 1 2 3 30 30 H 1.09001 * 109.47265 * 149.97682 * 1 2 3 31 31 H 0.97001 * 119.99887 * 185.00970 * 10 9 7 32 32 H 1.08994 * 115.55387 * 328.47722 * 15 6 4 33 33 H 1.09001 * 117.50233 * 0.02562 * 16 15 6 34 34 H 1.09002 * 117.49652 * 145.01677 * 16 15 6 35 35 H 1.08996 * 117.49478 * 214.97020 * 17 15 6 36 36 H 1.08998 * 117.50000 * 359.97236 * 17 15 6 37 37 H 1.07998 * 125.96603 * 179.97438 * 18 3 2 38 38 H 1.07997 * 120.02162 * 359.97438 * 22 21 20 39 39 H 1.07995 * 119.97990 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.97477 * 180.25769 * 26 24 23 41 41 H 1.08000 * 120.02281 * 179.74471 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1131 0.0000 4 6 1.8879 2.5200 0.0012 5 8 0.7080 2.7903 -0.1179 6 7 2.7954 3.5076 0.1342 7 6 4.1312 3.2084 0.1812 8 1 4.5138 2.5664 0.9608 9 6 4.9945 3.7312 -0.7743 10 7 4.5347 4.5391 -1.7032 11 14 6.8081 3.2854 -0.7383 12 1 7.0352 2.0687 -1.5588 13 1 7.6053 4.4103 -1.2899 14 1 7.2255 3.0229 0.6624 15 6 2.3529 4.9010 0.2286 16 6 3.4334 5.9811 0.3119 17 6 2.6014 5.6332 1.5488 18 6 3.6605 0.6492 -0.0006 19 7 3.6357 -0.6553 0.0052 20 7 2.3037 -1.0842 -0.0005 21 6 1.8724 -2.4182 -0.0004 22 6 2.5950 -3.3824 -0.6902 23 6 2.1683 -4.6959 -0.6894 24 6 1.0172 -5.0504 -0.0058 25 9 0.5982 -6.3348 -0.0107 26 6 0.2983 -4.0911 0.6876 27 6 0.7219 -2.7766 0.6891 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 5.1209 4.8462 -2.4125 32 1 1.4408 5.1427 -0.3171 33 1 4.4733 5.6550 0.2962 34 1 3.2319 6.9334 -0.1786 35 1 1.8529 6.3569 1.8715 36 1 3.0936 5.0781 2.3473 37 1 4.5464 1.2668 -0.0012 38 1 3.4898 -3.1053 -1.2277 39 1 2.7299 -5.4461 -1.2261 40 1 -0.5968 -4.3702 1.2236 41 1 0.1587 -2.0280 1.2266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:19 Heat of formation + Delta-G solvation = 73.823202 kcal Electronic energy + Delta-G solvation = -27621.191378 eV Core-core repulsion = 23612.246084 eV Total energy + Delta-G solvation = -4008.945295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.10458 -41.29097 -39.07370 -38.25378 -35.96633 -33.70006 -32.89089 -31.99298 -31.33112 -31.05482 -28.54545 -26.91279 -25.31535 -23.53204 -23.35133 -22.00899 -21.23801 -20.57479 -19.82549 -19.01220 -17.88186 -17.40190 -16.73249 -16.50786 -15.84194 -15.50371 -15.30778 -14.86899 -14.67386 -14.42409 -14.04369 -13.79735 -13.70227 -13.40784 -13.19588 -12.95180 -12.85979 -12.65209 -12.55289 -12.23786 -12.06665 -11.72196 -11.47732 -11.31462 -11.14299 -10.80513 -10.48007 -10.39925 -10.24964 -9.77325 -9.54937 -9.43641 -9.23939 -8.79418 -8.56860 -8.49890 -7.85275 -7.11434 -6.41103 -4.37710 0.64426 0.91634 2.11652 2.60348 2.95691 3.07599 3.15745 3.16983 3.33933 3.97891 4.00012 4.41058 4.46700 4.54545 4.64268 4.79765 4.85343 4.96039 4.97983 5.24051 5.29902 5.43262 5.54936 5.68390 5.76813 5.80959 5.87385 6.05252 6.07280 6.10744 6.21633 6.25120 6.26339 6.34708 6.47185 6.53865 6.61293 6.93119 7.10364 7.20734 7.29950 7.40022 7.44490 8.08685 8.12066 8.27597 8.94662 9.45903 9.91407 10.59164 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003414 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.810046 B = 8198.917342 C = 9384.302243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.123 3.877 3 C -0.233 4.233 4 C 0.568 3.432 5 O -0.601 6.601 6 N -0.413 5.413 7 C -0.357 4.357 8 H 0.087 0.913 9 C 0.060 3.940 10 N -0.840 5.840 11 Si 0.894 3.106 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.264 1.264 15 C 0.111 3.889 16 C -0.136 4.136 17 C -0.222 4.222 18 C 0.106 3.894 19 N -0.322 5.322 20 N -0.335 5.335 21 C 0.161 3.839 22 C -0.086 4.086 23 C -0.133 4.133 24 C 0.085 3.915 25 F -0.139 7.139 26 C -0.131 4.131 27 C -0.109 4.109 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.271 0.729 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.225 0.775 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -12.043 2.755 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.003 4.003 3 C -0.246 4.246 4 C 0.358 3.642 5 O -0.488 6.488 6 N -0.130 5.130 7 C -0.486 4.486 8 H 0.104 0.896 9 C -0.150 4.150 10 N -0.473 5.473 11 Si 0.718 3.282 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.188 1.188 15 C 0.006 3.994 16 C -0.174 4.174 17 C -0.261 4.261 18 C -0.081 4.081 19 N -0.139 5.139 20 N -0.110 5.110 21 C 0.069 3.931 22 C -0.105 4.105 23 C -0.153 4.153 24 C 0.065 3.935 25 F -0.118 7.118 26 C -0.150 4.150 27 C -0.129 4.129 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.241 0.759 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.868 -12.852 2.545 13.660 hybrid contribution 0.667 0.407 -0.148 0.796 sum -3.200 -12.445 2.397 13.071 Atomic orbital electron populations 1.20741 0.86702 1.04694 1.03296 1.21498 0.94524 0.85950 0.98333 1.20168 0.92480 0.93927 1.18029 1.17329 0.85059 0.83831 0.77969 1.90559 1.17834 1.84394 1.55967 1.42407 1.05181 1.02158 1.63219 1.19229 0.82547 1.33619 1.13157 0.89561 1.25649 0.99650 0.94595 0.95069 1.69972 1.36831 1.28524 1.11927 0.86447 0.83226 0.79024 0.79464 1.19467 1.20355 1.18777 1.21161 0.98175 0.82964 0.97091 1.22911 0.99085 0.97535 0.97834 1.23377 1.04580 1.04700 0.93428 1.25860 1.00099 0.89972 0.92126 1.77346 0.93977 1.14721 1.27834 1.45574 1.05466 1.02612 1.57317 1.17500 0.95465 0.81823 0.98360 1.20899 1.00573 0.91174 0.97903 1.21024 0.96187 0.96929 1.01133 1.17704 0.95686 0.78959 1.01113 1.91499 1.89812 1.35363 1.95133 1.20943 1.01275 0.91789 1.01031 1.21041 0.96565 0.96437 0.98897 0.90251 0.87171 0.91671 0.91869 0.88045 0.87140 0.90909 0.90581 0.89725 0.75936 0.83752 0.83968 0.83865 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 8.12 36.00 0.29 -1.16 16 2 C 0.12 2.30 6.84 -81.44 -0.56 1.74 16 3 C -0.23 -5.08 6.03 -105.05 -0.63 -5.71 16 4 C 0.57 13.87 7.62 -12.56 -0.10 13.77 16 5 O -0.60 -15.30 14.59 5.25 0.08 -15.22 16 6 N -0.41 -10.08 2.70 -108.96 -0.29 -10.38 16 7 C -0.36 -8.43 5.40 -14.98 -0.08 -8.51 16 8 H 0.09 1.98 6.14 -52.49 -0.32 1.65 16 9 C 0.06 1.40 3.84 -17.46 -0.07 1.33 16 10 N -0.84 -20.88 11.10 55.50 0.62 -20.26 16 11 Si 0.89 17.98 29.03 -169.99 -4.94 13.05 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 14 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 15 C 0.11 2.58 5.62 -67.93 -0.38 2.20 16 16 C -0.14 -2.91 8.30 -26.69 -0.22 -3.14 16 17 C -0.22 -4.46 10.37 -26.69 -0.28 -4.74 16 18 C 0.11 2.22 10.31 -16.94 -0.17 2.05 16 19 N -0.32 -6.31 12.25 30.88 0.38 -5.93 16 20 N -0.33 -5.90 3.71 -6.48 -0.02 -5.93 16 21 C 0.16 2.30 6.26 -83.58 -0.52 1.78 16 22 C -0.09 -1.08 9.75 -39.41 -0.38 -1.46 16 23 C -0.13 -1.39 10.02 -39.54 -0.40 -1.79 16 24 C 0.09 0.90 7.30 -39.39 -0.29 0.61 16 25 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16 26 C -0.13 -1.29 10.02 -39.54 -0.40 -1.69 16 27 C -0.11 -1.26 8.25 -39.41 -0.33 -1.59 16 28 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 29 H 0.11 1.91 6.40 -51.93 -0.33 1.58 16 30 H 0.06 0.81 6.86 -51.93 -0.36 0.45 16 31 H 0.27 6.43 8.32 -40.82 -0.34 6.09 16 32 H 0.10 2.44 7.76 -51.93 -0.40 2.04 16 33 H 0.11 2.55 5.46 -51.93 -0.28 2.27 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.23 4.70 4.20 -52.49 -0.22 4.48 16 38 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.14 1.52 6.05 -52.49 -0.32 1.20 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -28.12 343.51 -7.78 -35.90 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.31 Total: 11.35 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -4.51 Total: -6.30 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.68 Total: -42.50 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.94 Total: 13.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.12 -7.78 -35.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.726 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds