Wall clock time and date at job start Tue Mar 31 2020 05:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48505 * 109.46857 * 239.99985 * 3 2 1 5 5 H 1.48505 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47302 * 119.99750 * 3 2 1 7 7 C 1.38952 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00169 * 197.95178 * 7 2 1 9 9 N 1.37100 * 119.99580 * 17.94520 * 7 2 1 10 10 C 1.34770 * 120.00289 * 44.39990 * 9 7 2 11 11 O 1.21296 * 120.00059 * 0.27258 * 10 9 7 12 12 C 1.50700 * 120.00271 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.47134 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46866 * 180.02562 * 13 12 10 15 15 N 1.30971 * 126.45446 * 89.71212 * 14 13 12 16 16 C 1.35183 * 105.58590 * 179.85780 * 15 14 13 17 17 C 1.48551 * 126.40853 * 180.18371 * 16 15 14 18 18 N 1.32504 * 119.20413 * 0.02562 * 17 16 15 19 19 C 1.32178 * 120.75065 * 179.71572 * 18 17 16 20 20 C 1.38710 * 119.18560 * 0.54272 * 19 18 17 21 21 C 1.38705 * 118.53754 * 359.72913 * 20 19 18 22 22 N 1.32183 * 119.18479 * 0.02562 * 21 20 19 23 23 N 1.30685 * 107.18469 * 0.40744 * 16 15 14 24 24 O 1.21282 * 110.11646 * 359.74403 * 23 16 15 25 25 C 1.46509 * 119.99717 * 224.39548 * 9 7 2 26 26 C 1.52999 * 117.49999 * 3.27808 * 25 9 7 27 27 C 1.52995 * 117.49747 * 294.61692 * 25 9 7 28 28 H 0.96996 * 120.00114 * 354.95825 * 1 2 3 29 29 H 1.08993 * 109.46959 * 300.00356 * 12 10 9 30 30 H 1.09006 * 109.46685 * 60.00008 * 12 10 9 31 31 H 1.09000 * 109.47023 * 299.99756 * 13 12 10 32 32 H 1.08994 * 109.47050 * 60.00117 * 13 12 10 33 33 H 1.08007 * 120.40776 * 180.29974 * 19 18 17 34 34 H 1.08002 * 120.73304 * 179.75152 * 20 19 18 35 35 H 1.07998 * 120.40919 * 179.97438 * 21 20 19 36 36 H 1.08994 * 115.54514 * 148.94770 * 25 9 7 37 37 H 1.09006 * 117.49869 * 0.02562 * 26 25 9 38 38 H 1.08997 * 117.49971 * 145.01359 * 26 25 9 39 39 H 1.09002 * 117.49841 * 214.97740 * 27 25 9 40 40 H 1.08999 * 117.50270 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0495 -1.2259 0.2888 9 7 1.3734 -2.3619 -0.3648 10 6 0.5744 -2.3789 -1.4499 11 8 0.4213 -1.3704 -2.1062 12 6 -0.1237 -3.6526 -1.8518 13 6 -0.9623 -3.4005 -3.1065 14 6 -1.6608 -4.6740 -3.5079 15 7 -2.8427 -5.0726 -3.1083 16 6 -3.0542 -6.2570 -3.7248 17 6 -4.2616 -7.1132 -3.5990 18 7 -5.2557 -6.7181 -2.8172 19 6 -6.3465 -7.4533 -2.6872 20 6 -6.4372 -8.6559 -3.3725 21 6 -5.3757 -9.0414 -4.1778 22 7 -4.3160 -8.2563 -4.2670 23 7 -1.9957 -6.5101 -4.4483 24 8 -1.1882 -5.6124 -4.3345 25 6 1.5631 -3.5816 0.4245 26 6 2.4203 -3.4795 1.6876 27 6 2.9639 -4.1963 0.4491 28 1 -0.4850 0.8368 0.0738 29 1 0.6182 -4.4237 -2.0590 30 1 -0.7735 -3.9821 -1.0410 31 1 -1.7042 -2.6295 -2.8987 32 1 -0.3128 -3.0708 -3.9173 33 1 -7.1555 -7.1236 -2.0522 34 1 -7.3152 -9.2782 -3.2814 35 1 -5.4142 -9.9719 -4.7246 36 1 0.7135 -4.2640 0.4466 37 1 2.8429 -2.5048 1.9317 38 1 2.1349 -4.0950 2.5407 39 1 3.0360 -5.2832 0.4880 40 1 3.7443 -3.6936 -0.1221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067991236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:09 Heat of formation + Delta-G solvation = 133.524556 kcal Electronic energy + Delta-G solvation = -26691.040790 eV Core-core repulsion = 22704.604302 eV Total energy + Delta-G solvation = -3986.436488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.60605 -41.34610 -38.68487 -36.32385 -35.95979 -34.41056 -34.16620 -32.86959 -32.29314 -31.11941 -30.46111 -26.23784 -26.10127 -25.02772 -24.05939 -23.23986 -21.75665 -21.53717 -21.09907 -19.17650 -18.42565 -18.07815 -17.72422 -16.91051 -16.44255 -16.05804 -15.90900 -15.28752 -15.09103 -14.66393 -14.56398 -14.15676 -14.04664 -13.93507 -13.58810 -12.86375 -12.60651 -12.43700 -12.14743 -11.96978 -11.51959 -11.41704 -11.31134 -11.12024 -11.01536 -10.94642 -10.87878 -10.80338 -10.47314 -10.40857 -10.19479 -9.97107 -9.74800 -9.65384 -9.58438 -8.71231 -8.07640 -7.04747 -6.11462 -3.87632 0.05312 0.67069 1.23486 2.19720 2.67050 2.85378 3.31015 3.38268 3.40420 3.41280 3.46445 4.07157 4.12979 4.16397 4.27875 4.37169 4.59779 4.61804 4.75189 4.80282 4.97199 5.24645 5.30333 5.33564 5.44385 5.51352 5.59357 5.72542 5.76998 5.78477 5.89674 5.96876 6.11351 6.22519 6.32597 6.36813 6.47003 6.52693 6.74467 6.92882 7.55756 7.61647 8.10171 8.26041 9.04765 9.12100 9.64510 10.25036 10.97596 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002530 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.848794 B =11062.840246 C =11411.339666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.350 4.350 8 H 0.077 0.923 9 N -0.425 5.425 10 C 0.488 3.512 11 O -0.533 6.533 12 C -0.131 4.131 13 C -0.010 4.010 14 C 0.202 3.798 15 N -0.447 5.447 16 C 0.211 3.789 17 C 0.403 3.597 18 N -0.476 5.476 19 C 0.152 3.848 20 C -0.220 4.220 21 C 0.151 3.849 22 N -0.492 5.492 23 N -0.341 5.341 24 O 0.092 5.908 25 C 0.073 3.927 26 C -0.174 4.174 27 C -0.207 4.207 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.179 0.821 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 -16.907 -4.467 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.476 4.476 8 H 0.095 0.905 9 N -0.146 5.146 10 C 0.275 3.725 11 O -0.411 6.411 12 C -0.173 4.173 13 C -0.050 4.050 14 C -0.019 4.019 15 N -0.180 5.180 16 C -0.061 4.061 17 C 0.135 3.865 18 N -0.191 5.191 19 C -0.014 4.014 20 C -0.242 4.242 21 C -0.016 4.016 22 N -0.207 5.207 23 N -0.045 5.045 24 O 0.025 5.975 25 C -0.033 4.033 26 C -0.211 4.211 27 C -0.246 4.246 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.196 0.804 34 H 0.173 0.827 35 H 0.194 0.806 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.632 -16.378 -5.216 19.704 hybrid contribution -0.467 0.124 0.342 0.592 sum -10.099 -16.254 -4.873 19.747 Atomic orbital electron populations 1.69805 1.06498 1.27600 1.42667 1.25240 0.94844 0.99356 0.94218 0.86264 0.79279 0.81923 0.78469 1.19921 1.21197 1.20434 1.18797 0.94365 0.83687 1.50776 0.90517 1.42719 1.43797 1.06928 1.21148 1.19461 0.83130 0.88261 0.81680 1.90544 1.62848 1.34747 1.52999 1.21626 0.99212 0.99881 0.96603 1.20139 0.99521 0.85766 0.99545 1.29346 0.89330 0.94987 0.88194 1.72154 1.14007 1.08789 1.23031 1.22522 0.93876 0.92584 0.97106 1.18941 0.89406 0.88001 0.90117 1.68301 1.00699 1.33869 1.16251 1.23397 0.94279 0.89592 0.94140 1.23127 1.01928 0.99516 0.99659 1.23301 0.87248 0.97794 0.93221 1.68241 1.26952 1.04200 1.21281 1.74988 1.00740 1.09055 1.19700 1.85365 1.38349 1.23130 1.50637 1.21722 0.92569 0.91636 0.97366 1.23071 1.04476 1.02481 0.91093 1.23323 0.99734 0.98467 1.03078 0.92463 0.89925 0.89770 0.86044 0.87114 0.80438 0.82699 0.80585 0.88035 0.87441 0.89848 0.89839 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.02 11.74 55.50 0.65 -23.36 16 2 C 0.07 2.03 4.39 -17.47 -0.08 1.96 16 3 Si 0.91 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.35 -9.25 7.91 -14.93 -0.12 -9.37 16 8 H 0.08 1.97 7.26 -52.49 -0.38 1.59 16 9 N -0.43 -10.22 2.83 -107.73 -0.31 -10.53 16 10 C 0.49 11.54 6.96 -10.99 -0.08 11.47 16 11 O -0.53 -14.57 13.76 5.54 0.08 -14.50 16 12 C -0.13 -2.33 4.30 -27.88 -0.12 -2.45 16 13 C -0.01 -0.17 5.13 -27.88 -0.14 -0.31 16 14 C 0.20 3.16 7.75 -13.00 -0.10 3.06 16 15 N -0.45 -7.72 11.55 -9.90 -0.11 -7.83 16 16 C 0.21 3.52 7.99 -156.15 -1.25 2.27 16 17 C 0.40 5.99 7.60 -156.98 -1.19 4.80 16 18 N -0.48 -6.44 10.34 -11.10 -0.11 -6.56 16 19 C 0.15 1.29 11.30 -17.23 -0.19 1.10 16 20 C -0.22 -1.34 10.17 -39.23 -0.40 -1.74 16 21 C 0.15 1.21 11.30 -17.23 -0.19 1.01 16 22 N -0.49 -6.34 10.33 -11.10 -0.11 -6.45 16 23 N -0.34 -5.61 12.16 30.95 0.38 -5.23 16 24 O 0.09 1.41 11.29 18.01 0.20 1.62 16 25 C 0.07 1.42 5.87 -67.93 -0.40 1.02 16 26 C -0.17 -3.07 9.80 -26.69 -0.26 -3.33 16 27 C -0.21 -3.44 10.36 -26.70 -0.28 -3.71 16 28 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 29 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 30 H 0.08 1.47 7.57 -51.93 -0.39 1.08 16 31 H 0.12 2.10 8.10 -51.93 -0.42 1.68 16 32 H 0.11 1.64 8.10 -51.93 -0.42 1.22 16 33 H 0.18 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 35 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.10 1.78 6.96 -51.93 -0.36 1.42 16 37 H 0.11 2.11 6.73 -51.93 -0.35 1.76 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -35.29 355.50 -8.23 -43.53 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.42 Total: 1.72 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -4.80 Total: 5.78 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.38 Total: -59.97 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.28 Total: -12.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.29 -8.23 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.051 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds