Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99844 * 2 1 4 4 C 1.50704 * 109.47083 * 270.00024 * 3 2 1 5 5 H 1.07998 * 119.99730 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00159 * 180.02562 * 4 3 2 7 7 N 1.31507 * 120.00038 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99754 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47022 * 90.00389 * 8 6 4 10 10 H 1.48497 * 109.47165 * 210.00233 * 8 6 4 11 11 H 1.48501 * 109.47532 * 330.00445 * 8 6 4 12 12 C 1.34774 * 119.99874 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99702 * 174.75534 * 12 2 1 14 14 C 1.50692 * 120.00158 * 354.75339 * 12 2 1 15 15 C 1.52995 * 109.47442 * 306.25322 * 14 12 2 16 16 C 1.53007 * 109.47085 * 186.25480 * 14 12 2 17 17 C 1.50697 * 109.47132 * 66.25968 * 14 12 2 18 18 C 1.38261 * 120.00320 * 7.77099 * 17 14 12 19 19 C 1.38211 * 120.00286 * 180.27825 * 18 17 14 20 20 C 1.38258 * 119.99860 * 359.47462 * 19 18 17 21 21 C 1.38217 * 120.00069 * 0.24730 * 20 19 18 22 22 C 1.50699 * 119.99877 * 180.02562 * 21 20 19 23 23 F 1.39895 * 109.47459 * 0.02562 * 22 21 20 24 24 F 1.39893 * 109.46793 * 120.00736 * 22 21 20 25 25 F 1.39906 * 109.46778 * 240.00326 * 22 21 20 26 26 C 1.38218 * 120.00186 * 187.50311 * 17 14 12 27 27 H 1.09001 * 109.47212 * 272.98179 * 1 2 3 28 28 H 1.09001 * 109.47147 * 32.98370 * 1 2 3 29 29 H 1.09001 * 109.46902 * 152.98033 * 1 2 3 30 30 H 1.09000 * 109.47181 * 29.99496 * 3 2 1 31 31 H 1.09000 * 109.47296 * 150.00259 * 3 2 1 32 32 H 0.96996 * 120.00130 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.47373 * 188.75867 * 15 14 12 34 34 H 1.09003 * 109.47468 * 308.76185 * 15 14 12 35 35 H 1.09002 * 109.46780 * 68.75870 * 15 14 12 36 36 H 1.09000 * 109.46832 * 299.99856 * 16 14 12 37 37 H 1.09003 * 109.46950 * 60.00124 * 16 14 12 38 38 H 1.09000 * 109.47090 * 179.97438 * 16 14 12 39 39 H 1.07997 * 119.99682 * 0.03228 * 18 17 14 40 40 H 1.07992 * 120.00111 * 179.74464 * 19 18 17 41 41 H 1.08001 * 120.00278 * 180.27695 * 20 19 18 42 42 H 1.08003 * 119.99619 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3464 3.2569 -2.9127 8 14 3.7338 3.9288 -0.2530 9 1 5.1069 3.5070 0.1236 10 1 3.7496 5.3554 -0.6648 11 1 2.8273 3.7596 0.9110 12 6 2.1389 -1.1672 0.0005 13 8 3.3479 -1.1694 -0.0955 14 6 1.3901 -2.4694 0.1204 15 6 0.4917 -2.4291 1.3581 16 6 2.3885 -3.6215 0.2523 17 6 0.5432 -2.6770 -1.1086 18 6 0.6671 -1.8198 -2.1864 19 6 -0.1138 -2.0067 -3.3114 20 6 -1.0110 -3.0574 -3.3633 21 6 -1.1307 -3.9177 -2.2882 22 6 -2.1083 -5.0632 -2.3451 23 9 -2.7724 -5.0489 -3.5763 24 9 -1.4189 -6.2720 -2.2016 25 9 -3.0407 -4.9323 -1.3103 26 6 -0.3534 -3.7275 -1.1608 27 1 -0.3634 0.0535 1.0263 28 1 -0.3633 0.8620 -0.5595 29 1 -0.3633 -0.9155 -0.4669 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1385 0.5138 32 1 3.8232 4.0827 -3.0900 33 1 0.0703 -3.4189 1.5337 34 1 1.0797 -2.1257 2.2243 35 1 -0.3152 -1.7139 1.1982 36 1 3.0285 -3.6502 -0.6295 37 1 3.0011 -3.4714 1.1413 38 1 1.8469 -4.5634 0.3395 39 1 1.3712 -1.0018 -2.1476 40 1 -0.0199 -1.3347 -4.1515 41 1 -1.6180 -3.2061 -4.2441 42 1 -0.4468 -4.3999 -0.3208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -149.076328 kcal Electronic energy + Delta-G solvation = -29400.172113 eV Core-core repulsion = 24930.871983 eV Total energy + Delta-G solvation = -4469.300130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.30314 -47.82741 -47.75855 -40.89079 -38.64869 -35.22817 -35.13082 -32.52781 -32.00606 -30.09533 -28.75323 -27.12397 -26.22613 -26.09617 -24.17748 -22.62221 -22.03417 -20.72951 -18.95505 -18.62637 -18.45802 -17.83786 -17.15727 -16.31094 -16.13713 -15.70726 -15.27481 -14.69600 -14.68315 -14.55542 -14.34599 -14.21065 -14.08871 -13.93077 -13.86715 -13.83097 -13.52096 -13.32992 -12.74214 -12.51512 -12.44947 -12.25088 -12.19984 -12.16243 -12.04084 -11.71900 -11.50194 -11.27111 -10.99481 -10.91841 -10.79342 -10.56456 -10.19553 -9.60416 -9.20754 -9.05704 -8.84555 -8.63988 -7.77146 -6.14254 -4.13273 0.87007 1.13396 2.51711 3.16684 3.25365 3.31257 3.33369 3.39274 3.57584 3.72313 3.88950 4.29082 4.34796 4.51306 4.60649 4.79071 4.96702 5.06445 5.13390 5.20071 5.23880 5.32158 5.55557 5.56867 5.61628 5.72313 5.75218 5.79276 5.86688 5.91649 6.00620 6.07726 6.19397 6.34311 6.34786 6.43691 6.64555 6.70562 6.86720 7.25182 7.54799 8.14527 8.39321 8.83180 8.88998 9.46056 10.98852 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.003599 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.910586 B = 7778.210845 C = 8449.942277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.593 5.593 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.516 3.484 13 O -0.530 6.530 14 C -0.044 4.044 15 C -0.152 4.152 16 C -0.122 4.122 17 C -0.070 4.070 18 C -0.074 4.074 19 C -0.112 4.112 20 C -0.076 4.076 21 C -0.189 4.189 22 C 0.510 3.490 23 F -0.179 7.179 24 F -0.179 7.179 25 F -0.178 7.178 26 C -0.064 4.064 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 -15.273 4.132 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.325 5.325 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.302 3.698 13 O -0.406 6.406 14 C -0.048 4.048 15 C -0.209 4.209 16 C -0.180 4.180 17 C -0.070 4.070 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.094 4.094 21 C -0.191 4.191 22 C 0.456 3.544 23 F -0.160 7.160 24 F -0.160 7.160 25 F -0.160 7.160 26 C -0.082 4.082 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.636 -15.125 3.978 19.493 hybrid contribution 0.106 0.546 0.501 0.748 sum -11.530 -14.579 4.479 19.119 Atomic orbital electron populations 1.22151 0.81193 1.03439 1.00770 1.47820 1.06146 1.06925 1.71618 1.19693 0.92331 0.80039 0.98492 1.21270 1.37161 1.07169 0.91083 0.90752 1.24838 0.95180 0.97337 0.95523 1.69881 1.41342 1.23575 1.18627 0.86863 0.80119 0.79822 0.82955 1.19929 1.21074 1.19098 1.20031 0.87804 0.84648 0.77365 1.90695 1.14011 1.86846 1.49062 1.19841 0.95590 0.95601 0.93726 1.22212 0.99759 1.03068 0.95888 1.21661 0.97847 0.94860 1.03589 1.19515 0.96707 0.95291 0.95517 1.21920 0.97339 0.98146 0.91813 1.21236 0.95483 0.97476 0.98804 1.21018 0.97729 0.93517 0.97100 1.19822 1.01928 0.98437 0.98868 1.18312 0.80051 0.82537 0.73467 1.93156 1.82182 1.96625 1.44047 1.93210 1.79308 1.48035 1.95433 1.93212 1.67705 1.95921 1.59125 1.20568 0.94082 0.97106 0.96481 0.93326 0.90731 0.90893 0.95151 0.94675 0.92522 0.91688 0.91590 0.90481 0.91472 0.91502 0.92257 0.83244 0.84350 0.84605 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 7.91 59.85 0.47 1.49 16 2 N -0.59 -11.43 2.22 -182.95 -0.41 -11.84 16 3 C 0.21 5.01 4.20 -5.19 -0.02 4.99 16 4 C -0.53 -14.42 9.94 -34.44 -0.34 -14.77 16 5 H 0.07 2.19 7.39 -52.49 -0.39 1.80 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 8 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 12 C 0.52 9.87 4.87 -10.99 -0.05 9.82 16 13 O -0.53 -12.46 15.62 5.55 0.09 -12.38 16 14 C -0.04 -0.62 0.59 -156.82 -0.09 -0.72 16 15 C -0.15 -1.70 7.61 37.15 0.28 -1.41 16 16 C -0.12 -1.61 7.66 37.16 0.28 -1.33 16 17 C -0.07 -0.94 3.10 -104.62 -0.32 -1.26 16 18 C -0.07 -1.12 7.23 -39.58 -0.29 -1.41 16 19 C -0.11 -1.44 10.05 -39.58 -0.40 -1.84 16 20 C -0.08 -0.85 9.43 -39.58 -0.37 -1.23 16 21 C -0.19 -2.15 5.37 -104.62 -0.56 -2.71 16 22 C 0.51 5.52 3.32 36.01 0.12 5.64 16 23 F -0.18 -1.93 15.97 2.25 0.04 -1.89 16 24 F -0.18 -2.00 17.24 2.25 0.04 -1.96 16 25 F -0.18 -1.95 17.24 2.25 0.04 -1.91 16 26 C -0.06 -0.74 8.40 -39.58 -0.33 -1.07 16 27 H 0.05 0.61 7.11 -51.93 -0.37 0.24 16 28 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 29 H 0.07 0.98 3.40 -51.93 -0.18 0.80 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.88 6.93 -51.93 -0.36 0.52 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.06 0.57 7.35 -51.93 -0.38 0.19 16 34 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.08 0.82 4.52 -51.93 -0.23 0.59 16 36 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 39 H 0.15 2.83 5.33 -52.49 -0.28 2.55 16 40 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.14 1.27 7.16 -52.49 -0.38 0.90 16 42 H 0.13 1.26 7.27 -52.48 -0.38 0.88 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -31.45 345.81 -5.61 -37.06 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.00 Total: 1.19 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.72 Total: -3.82 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.37 Total: -37.84 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.11 Total: -5.76 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.45 -5.61 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.020 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds