Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46710 * 2 1 4 4 C 1.53007 * 109.47318 * 240.00275 * 2 1 3 5 5 C 1.52991 * 109.47248 * 120.00128 * 2 1 3 6 6 N 1.46494 * 109.47350 * 64.69705 * 5 2 1 7 7 C 1.46502 * 119.99943 * 84.78676 * 6 5 2 8 8 C 1.50699 * 109.47326 * 80.14070 * 7 6 5 9 9 H 1.07999 * 120.00295 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99995 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00220 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00132 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47064 * 89.99478 * 12 10 8 14 14 H 1.48500 * 109.47327 * 209.99814 * 12 10 8 15 15 H 1.48503 * 109.46789 * 329.99602 * 12 10 8 16 16 S 1.65600 * 120.00392 * 264.78436 * 6 5 2 17 17 O 1.42094 * 106.40144 * 23.53474 * 16 6 5 18 18 O 1.42102 * 106.40513 * 156.46289 * 16 6 5 19 19 C 1.76210 * 107.21744 * 269.99951 * 16 6 5 20 20 C 1.38219 * 120.01089 * 114.99575 * 19 16 6 21 21 C 1.38225 * 120.02445 * 179.97438 * 20 19 16 22 22 C 1.38270 * 120.04910 * 0.02562 * 21 20 19 23 23 C 1.38171 * 120.02739 * 0.02562 * 22 21 20 24 24 C 1.38434 * 120.01336 * 294.72531 * 19 16 6 25 25 F 1.35105 * 120.02318 * 359.97438 * 24 19 16 26 26 H 1.08998 * 109.47307 * 300.00362 * 1 2 3 27 27 H 1.09000 * 109.47273 * 60.00055 * 1 2 3 28 28 H 1.09006 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46817 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46942 * 299.99513 * 3 2 1 31 31 H 1.08990 * 109.47396 * 60.00007 * 3 2 1 32 32 H 1.09005 * 109.46541 * 308.21710 * 4 2 1 33 33 H 1.08997 * 109.47203 * 68.21356 * 4 2 1 34 34 H 1.08999 * 109.46822 * 188.22046 * 4 2 1 35 35 H 1.09008 * 109.47100 * 304.70027 * 5 2 1 36 36 H 1.09006 * 109.47527 * 184.70477 * 5 2 1 37 37 H 1.09000 * 109.47522 * 200.14679 * 7 6 5 38 38 H 1.09001 * 109.46844 * 320.14142 * 7 6 5 39 39 H 0.96992 * 120.00376 * 180.02562 * 11 10 8 40 40 H 1.08002 * 119.99061 * 0.02562 * 20 19 16 41 41 H 1.07997 * 119.97567 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.98535 * 179.97438 * 22 21 20 43 43 H 1.08003 * 120.01675 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2491 6 7 1.6462 -2.1312 1.1940 7 6 2.4746 -3.0950 0.4652 8 6 3.6474 -3.4981 1.3214 9 1 3.7639 -3.0787 2.3098 10 6 4.5717 -4.4025 0.8430 11 7 4.4296 -4.9137 -0.3604 12 14 6.0250 -4.9027 1.9047 13 1 5.6572 -6.0876 2.7208 14 1 7.1805 -5.2399 1.0350 15 1 6.3926 -3.7781 2.8022 16 16 0.2649 -2.6356 1.9553 17 8 -0.5693 -1.4913 2.0728 18 8 -0.1412 -3.8296 1.3005 19 6 0.7122 -3.0958 3.5964 20 6 0.2204 -2.3818 4.6730 21 6 0.5706 -2.7429 5.9604 22 6 1.4136 -3.8181 6.1729 23 6 1.9073 -4.5326 5.0982 24 6 1.5518 -4.1759 3.8083 25 9 2.0282 -4.8781 2.7570 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.5617 -1.6977 -1.3258 33 1 1.8016 -0.1296 -2.1332 34 1 3.1201 -0.8502 -1.1788 35 1 1.6095 -0.2583 2.1372 36 1 3.1268 -0.6488 1.2923 37 1 1.8802 -3.9765 0.2249 38 1 2.8371 -2.6391 -0.4561 39 1 5.0796 -5.5501 -0.6968 40 1 -0.4385 -1.5421 4.5082 41 1 0.1856 -2.1847 6.8010 42 1 1.6870 -4.0990 7.1793 43 1 2.5661 -5.3721 5.2644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078517566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = -90.276889 kcal Electronic energy + Delta-G solvation = -28575.249436 eV Core-core repulsion = 24662.339428 eV Total energy + Delta-G solvation = -3912.910009 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.40826 -38.68682 -37.98859 -36.59685 -35.25849 -34.03336 -32.18491 -31.24251 -30.30327 -27.74902 -26.88756 -26.59638 -24.99071 -23.32018 -22.55156 -22.11076 -18.93150 -18.41200 -17.56028 -16.87649 -16.74227 -16.34774 -16.12519 -15.28599 -15.02502 -14.87427 -14.42657 -14.28387 -14.04493 -13.90165 -13.57584 -12.99792 -12.87373 -12.52776 -12.38079 -12.29420 -12.14494 -12.04104 -11.56713 -11.54093 -11.46249 -11.38991 -11.19388 -11.15749 -11.02149 -10.81851 -10.73275 -10.51508 -10.32331 -10.12918 -9.98863 -9.93357 -9.65620 -9.34111 -8.60298 -8.41374 -7.96118 -6.05448 -4.07735 0.80988 1.10765 1.31578 3.25851 3.33222 3.33570 3.41844 3.70919 4.24373 4.40370 4.45373 4.72246 4.89379 5.04406 5.21212 5.22684 5.25157 5.30520 5.33547 5.47815 5.68763 5.72805 5.92768 5.99920 6.01987 6.07410 6.12601 6.18922 6.20747 6.26128 6.28003 6.32283 6.42335 6.58599 6.62720 6.66780 6.84539 6.94759 6.97306 7.40035 7.46437 7.67670 7.90025 8.20417 8.91091 9.54558 11.02951 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.008308 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.626478 B = 3369.261222 C = 5319.069389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.143 3.857 6 N -0.973 5.973 7 C 0.232 3.768 8 C -0.526 4.526 9 H 0.056 0.944 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.884 3.116 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.275 1.275 16 S 2.685 3.315 17 O -0.969 6.969 18 O -0.953 6.953 19 C -0.721 4.721 20 C 0.000 4.000 21 C -0.169 4.169 22 C -0.044 4.044 23 C -0.188 4.188 24 C 0.221 3.779 25 F -0.082 7.082 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.263 0.737 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 7.785 8.638 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.193 4.193 4 C -0.196 4.196 5 C 0.016 3.984 6 N -0.812 5.812 7 C 0.111 3.889 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.134 4.134 11 N -0.527 5.527 12 Si 0.712 3.288 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.200 1.200 16 S 2.773 3.227 17 O -0.959 6.959 18 O -0.943 6.943 19 C -0.805 4.805 20 C -0.019 4.019 21 C -0.188 4.188 22 C -0.062 4.062 23 C -0.207 4.207 24 C 0.200 3.800 25 F -0.059 7.059 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.164 0.836 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.307 7.548 8.124 12.757 hybrid contribution 1.633 -0.746 1.146 2.130 sum -4.674 6.802 9.270 12.411 Atomic orbital electron populations 1.21948 0.94168 1.01602 1.01277 1.21002 0.96130 0.95084 0.96779 1.21782 1.00944 0.95279 1.01310 1.22006 1.01788 1.00419 0.95406 1.21190 1.01250 0.79762 0.96169 1.57311 1.44041 1.14902 1.64932 1.19589 0.89651 0.86974 0.92691 1.21427 1.08329 1.25061 1.01708 0.92574 1.24824 0.97758 0.95945 0.94909 1.69913 1.36225 1.30174 1.16421 0.86719 0.82546 0.78993 0.80551 1.20597 1.21156 1.19983 1.02201 0.73876 0.73501 0.73107 1.93543 1.65298 1.50078 1.86960 1.93585 1.80545 1.47783 1.72397 1.31397 1.14607 1.07955 1.26565 1.20825 0.94013 0.95900 0.91189 1.21201 1.01268 0.99203 0.97086 1.21216 0.93305 0.93101 0.98559 1.21303 1.04472 1.03598 0.91338 1.17253 0.89387 0.88126 0.85241 1.91899 1.84327 1.75781 1.53877 0.91487 0.93682 0.93600 0.92588 0.92853 0.92889 0.91603 0.93919 0.91890 0.91654 0.89836 0.92905 0.92475 0.92725 0.83639 0.85043 0.84912 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 6.90 37.16 0.26 -1.85 16 2 C -0.09 -1.37 0.85 -154.51 -0.13 -1.50 16 3 C -0.14 -1.71 8.47 37.16 0.31 -1.39 16 4 C -0.14 -2.32 6.85 37.16 0.25 -2.06 16 5 C 0.14 2.45 4.57 -4.05 -0.02 2.43 16 6 N -0.97 -19.70 2.26 -115.67 -0.26 -19.96 16 7 C 0.23 5.59 4.12 -5.19 -0.02 5.57 16 8 C -0.53 -13.47 6.59 -34.44 -0.23 -13.70 16 9 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 12 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 S 2.69 53.87 4.51 -107.50 -0.48 53.39 16 17 O -0.97 -18.23 12.41 -57.17 -0.71 -18.94 16 18 O -0.95 -22.51 15.94 -57.17 -0.91 -23.42 16 19 C -0.72 -13.21 5.91 -39.52 -0.23 -13.45 16 20 C 0.00 0.00 9.55 -39.59 -0.38 -0.38 16 21 C -0.17 -2.07 10.04 -39.57 -0.40 -2.47 16 22 C -0.04 -0.54 10.04 -39.59 -0.40 -0.94 16 23 C -0.19 -2.94 10.03 -39.52 -0.40 -3.33 16 24 C 0.22 4.29 7.15 -39.42 -0.28 4.00 16 25 F -0.08 -1.88 12.84 2.25 0.03 -1.85 16 26 H 0.07 1.04 7.43 -51.93 -0.39 0.65 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.82 5.80 -51.93 -0.30 0.51 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.23 6.36 -51.93 -0.33 0.90 16 33 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 34 H 0.06 1.10 7.48 -51.93 -0.39 0.71 16 35 H 0.07 1.00 7.60 -51.92 -0.39 0.61 16 36 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 37 H 0.05 1.43 6.84 -51.93 -0.36 1.08 16 38 H 0.06 1.39 4.90 -51.93 -0.25 1.14 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.15 1.87 7.33 -52.49 -0.38 1.48 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -30.69 351.39 -9.22 -39.91 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.14 Total: 1.52 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -1.75 Total: -27.33 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.48 Total: -44.34 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.62 Total: -42.36 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 53.87 SS G_CDS: -0.48 Total: 53.39 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.69 -9.22 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078517566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.369 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds