Wall clock time and date at job start Tue Mar 31 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47121 * 270.02161 * 8 7 6 10 10 O 1.21281 * 119.99946 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99693 * 0.02562 * 11 9 8 13 13 C 1.50699 * 109.47083 * 90.00131 * 12 11 9 14 14 H 1.07996 * 120.00254 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99729 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99596 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00307 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47341 * 89.99192 * 17 15 13 19 19 H 1.48498 * 109.47029 * 209.99574 * 17 15 13 20 20 H 1.48509 * 109.46737 * 329.99782 * 17 15 13 21 21 C 1.46497 * 120.00257 * 180.02562 * 11 9 8 22 22 C 1.50694 * 109.47421 * 89.99783 * 21 11 9 23 23 C 1.34513 * 125.78839 * 90.00241 * 22 21 11 24 24 C 1.41381 * 106.84108 * 179.97438 * 23 22 21 25 25 C 1.34514 * 106.84049 * 359.97438 * 24 23 22 26 26 O 1.34299 * 125.79117 * 269.69239 * 22 21 11 27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 36 36 H 1.09006 * 109.46884 * 209.99584 * 12 11 9 37 37 H 1.08995 * 109.47556 * 329.99488 * 12 11 9 38 38 H 0.97008 * 120.00050 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.46997 * 210.00327 * 21 11 9 40 40 H 1.08999 * 109.47101 * 329.99430 * 21 11 9 41 41 H 1.08006 * 126.58044 * 359.96408 * 23 22 21 42 42 H 1.08001 * 126.58029 * 179.97438 * 24 23 22 43 43 H 1.08005 * 125.78925 * 180.02562 * 25 24 23 44 44 H 1.08006 * 120.02917 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0613 2.6253 -1.4222 10 8 5.2736 2.5833 -2.3435 11 7 7.3843 2.6961 -1.6694 12 6 8.3357 2.7462 -0.5565 13 6 8.7377 1.3446 -0.1758 14 1 8.3255 0.5009 -0.7092 15 6 9.6320 1.1395 0.8534 16 7 9.9824 -0.0837 1.1859 17 14 10.3446 2.5988 1.7764 18 1 9.4717 2.9279 2.9318 19 1 11.7052 2.2590 2.2649 20 1 10.4234 3.7696 0.8662 21 6 7.8709 2.7229 -3.0510 22 6 7.9620 4.1508 -3.5239 23 6 9.0371 4.9508 -3.4078 24 6 8.6858 6.1947 -3.9807 25 6 7.4172 6.0802 -4.4131 26 8 6.9855 4.8386 -4.1380 27 6 3.4311 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2128 2.3203 -0.0106 32 1 1.3339 4.5114 0.0011 33 1 3.7922 4.6381 0.0002 34 1 5.8760 3.5065 0.5126 35 1 5.9718 1.7291 0.5125 36 1 9.2194 3.3081 -0.8591 37 1 7.8693 3.2354 0.2986 38 1 10.6112 -0.2281 1.9103 39 1 8.8571 2.2610 -3.0978 40 1 7.1809 2.1718 -3.6900 41 1 9.9864 4.6926 -2.9622 42 1 9.3152 7.0691 -4.0566 43 1 6.8443 6.8543 -4.9022 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078915905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:10 Heat of formation + Delta-G solvation = -25.984749 kcal Electronic energy + Delta-G solvation = -27762.968033 eV Core-core repulsion = 23840.862295 eV Total energy + Delta-G solvation = -3922.105738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25975 -40.10332 -39.14671 -37.29035 -35.27772 -32.91307 -32.56359 -32.35128 -30.64362 -30.24368 -27.94117 -27.67953 -27.06447 -25.08830 -22.67029 -22.35259 -21.41227 -21.28519 -20.29869 -18.67614 -17.47578 -17.30866 -16.87838 -16.40844 -16.15354 -15.91950 -15.81335 -15.66032 -15.17161 -14.83782 -14.20345 -14.09981 -13.80657 -13.46899 -13.10696 -12.99211 -12.69432 -12.57747 -12.51193 -12.45145 -12.25831 -12.00290 -11.82262 -11.62009 -11.35808 -11.24089 -10.99485 -10.91868 -10.75529 -10.61057 -10.35324 -9.72185 -9.65068 -9.29722 -8.76961 -8.59718 -8.25274 -8.01264 -7.92475 -6.25412 -4.28165 1.50010 1.66068 1.95385 2.81692 3.14911 3.15769 3.23434 3.25384 3.33109 3.43558 3.79139 4.10265 4.23311 4.86556 4.93387 4.98513 5.04848 5.07431 5.09394 5.21028 5.22395 5.26712 5.38203 5.39817 5.52258 5.52756 5.70189 5.74880 5.88145 6.00331 6.02456 6.16843 6.21366 6.23238 6.34313 6.38320 6.46106 6.57759 6.60880 6.74501 6.83481 6.95265 7.19411 7.38519 7.44110 7.52970 8.02551 8.34003 8.77604 8.86202 9.33419 10.86875 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008573 B = 0.004379 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.249171 B = 6392.111290 C = 8712.686107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.215 4.215 5 C -0.084 4.084 6 C -0.143 4.143 7 C -0.014 4.014 8 C -0.104 4.104 9 C 0.525 3.475 10 O -0.551 6.551 11 N -0.589 5.589 12 C 0.208 3.792 13 C -0.545 4.545 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.888 5.888 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.196 3.804 22 C -0.013 4.013 23 C -0.206 4.206 24 C -0.217 4.217 25 C -0.051 4.051 26 O -0.165 6.165 27 C -0.133 4.133 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.267 0.733 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.196 0.804 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 8.867 -3.560 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.234 4.234 5 C -0.102 4.102 6 C -0.161 4.161 7 C -0.014 4.014 8 C -0.143 4.143 9 C 0.314 3.686 10 O -0.429 6.429 11 N -0.320 5.320 12 C 0.087 3.913 13 C -0.583 4.583 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.525 5.525 17 Si 0.694 3.306 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.188 1.188 21 C 0.072 3.928 22 C -0.065 4.065 23 C -0.226 4.226 24 C -0.237 4.237 25 C -0.120 4.120 26 O -0.060 6.060 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.213 0.787 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.182 8.396 -3.963 15.317 hybrid contribution 0.603 1.104 0.676 1.429 sum -11.579 9.501 -3.287 15.334 Atomic orbital electron populations 1.22995 0.78916 1.03591 1.01087 1.86084 1.20947 1.27167 1.88964 1.18929 0.92204 0.83947 0.97008 1.21105 0.99508 0.92509 1.10237 1.20795 0.94419 0.96720 0.98234 1.20889 0.93695 0.97885 1.03656 1.19232 0.94408 0.92324 0.95477 1.20739 0.91387 1.06368 0.95812 1.20306 0.81960 0.75583 0.90796 1.90660 1.55157 1.50738 1.46376 1.47947 1.06239 1.71519 1.06269 1.19873 0.88450 0.98507 0.84468 1.21369 1.27141 0.91488 1.18321 0.90133 1.24854 0.95657 0.95538 0.96447 1.69885 1.33270 1.20024 1.29305 0.86971 0.79288 0.83384 0.80909 1.19758 1.20853 1.18796 1.19712 1.02598 0.86655 0.83818 1.23274 0.86924 0.96733 0.99598 1.21662 1.00528 0.93870 1.06573 1.21784 0.96763 0.99482 1.05635 1.23972 0.96204 0.86301 1.05496 1.84121 1.39963 1.22379 1.59577 1.20308 0.91240 0.98452 1.05127 0.92895 0.92871 0.88508 0.85973 0.86148 0.86269 0.88226 0.86102 0.94654 0.95071 0.92281 0.86772 0.88930 0.83450 0.83879 0.78697 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.61 10.50 -19.44 -0.20 -4.81 16 3 C 0.12 1.93 6.69 -39.22 -0.26 1.67 16 4 C -0.21 -2.90 9.04 -39.43 -0.36 -3.26 16 5 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 6 C -0.14 -2.18 9.70 -39.56 -0.38 -2.56 16 7 C -0.01 -0.24 4.37 -104.65 -0.46 -0.69 16 8 C -0.10 -1.85 4.38 -29.03 -0.13 -1.97 16 9 C 0.53 10.67 7.66 -10.99 -0.08 10.59 16 10 O -0.55 -12.40 15.61 5.56 0.09 -12.31 16 11 N -0.59 -11.79 2.44 -176.44 -0.43 -12.22 16 12 C 0.21 4.40 4.03 -5.19 -0.02 4.38 16 13 C -0.54 -13.69 9.83 -34.44 -0.34 -14.03 16 14 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 17 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 21 C 0.20 3.55 5.94 -5.20 -0.03 3.52 16 22 C -0.01 -0.23 6.90 -35.63 -0.25 -0.48 16 23 C -0.21 -3.26 10.81 -39.70 -0.43 -3.69 16 24 C -0.22 -3.00 10.91 -39.70 -0.43 -3.43 16 25 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 26 O -0.17 -2.90 10.65 5.72 0.06 -2.83 16 27 C -0.13 -2.29 9.64 -39.44 -0.38 -2.67 16 28 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 29 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 1.59 7.35 -51.93 -0.38 1.20 16 35 H 0.12 2.25 7.94 -51.93 -0.41 1.84 16 36 H 0.04 0.74 7.13 -51.93 -0.37 0.37 16 37 H 0.03 0.64 5.87 -51.93 -0.30 0.33 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.11 1.93 8.07 -51.93 -0.42 1.51 16 40 H 0.09 1.71 7.42 -51.93 -0.39 1.32 16 41 H 0.15 2.18 8.06 -52.48 -0.42 1.76 16 42 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.20 1.86 8.06 -52.48 -0.42 1.43 16 44 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -32.00 376.95 -7.35 -39.35 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.95 Total: 8.20 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.70 Total: -11.27 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.34 Total: -36.51 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.00 -7.35 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078915905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.361 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds