Wall clock time and date at job start Tue Mar 31 2020 05:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48508 * 109.46854 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47173 * 299.99337 * 3 2 1 6 6 H 1.48496 * 109.47360 * 59.99702 * 3 2 1 7 7 C 1.37876 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47148 * 175.17879 * 9 7 2 11 11 C 1.46900 * 111.00428 * 297.22078 * 10 9 7 12 12 C 1.50699 * 109.46828 * 293.95232 * 11 10 9 13 13 C 1.34515 * 125.78900 * 89.99847 * 12 11 10 14 14 C 1.41384 * 106.84342 * 180.02562 * 13 12 11 15 15 C 1.34515 * 106.83786 * 0.02562 * 14 13 12 16 16 O 1.34299 * 125.79014 * 270.34854 * 12 11 10 17 17 C 1.46899 * 110.99627 * 61.17435 * 10 9 7 18 18 C 1.50701 * 109.47489 * 71.94284 * 17 10 9 19 19 N 1.30081 * 124.95430 * 274.99993 * 18 17 10 20 20 C 1.35813 * 109.63665 * 179.97438 * 19 18 17 21 21 C 1.40458 * 106.95880 * 0.02562 * 20 19 18 22 22 C 1.38834 * 119.94890 * 179.97438 * 21 20 19 23 23 C 1.37849 * 119.87427 * 0.02562 * 22 21 20 24 24 C 1.38745 * 120.48173 * 359.97438 * 23 22 21 25 25 C 1.37842 * 120.49019 * 0.02562 * 24 23 22 26 26 F 1.35102 * 120.13278 * 180.02562 * 25 24 23 27 27 N 1.36077 * 124.95604 * 94.68739 * 18 17 10 28 28 H 0.97002 * 126.34783 * 0.02762 * 27 18 17 29 29 H 0.96997 * 119.99630 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46862 * 55.18771 * 9 7 2 31 31 H 1.08994 * 109.47554 * 295.18401 * 9 7 2 32 32 H 1.08991 * 109.47313 * 173.95117 * 11 10 9 33 33 H 1.09003 * 109.46765 * 53.95200 * 11 10 9 34 34 H 1.08000 * 126.57988 * 0.02562 * 13 12 11 35 35 H 1.07993 * 126.58353 * 180.02562 * 14 13 12 36 36 H 1.07996 * 125.79143 * 179.97438 * 15 14 13 37 37 H 1.09007 * 109.47191 * 191.94326 * 17 10 9 38 38 H 1.08996 * 109.47351 * 311.94030 * 17 10 9 39 39 H 1.08005 * 120.06160 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.76161 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.75554 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2015 -3.6133 -0.1153 11 6 2.9300 -3.5536 -1.3895 12 6 1.9697 -3.7818 -2.5282 13 6 1.2809 -2.8276 -3.1796 14 6 0.5072 -3.4817 -4.1658 15 6 0.7691 -4.7966 -4.0576 16 8 1.6515 -4.9731 -3.0605 17 6 3.1310 -3.6326 1.0221 18 6 2.3995 -4.0807 2.2612 19 7 1.7123 -3.3012 3.0438 20 6 1.1855 -4.0276 4.0633 21 6 1.5947 -5.3577 3.8729 22 6 1.2024 -6.3392 4.7730 23 6 0.4114 -6.0052 5.8514 24 6 0.0036 -4.6934 6.0456 25 6 0.3828 -3.7050 5.1628 26 9 -0.0180 -2.4299 5.3592 27 7 2.3565 -5.3606 2.7213 28 1 2.7841 -6.1316 2.3167 29 1 -0.4849 0.8400 -0.0004 30 1 0.5617 -2.5206 -0.8435 31 1 0.6903 -2.5950 0.9302 32 1 3.7005 -4.3244 -1.4039 33 1 3.3946 -2.5734 -1.4968 34 1 1.3128 -1.7655 -2.9864 35 1 -0.1650 -3.0152 -4.8706 36 1 0.3393 -5.5784 -4.6663 37 1 3.9475 -4.3237 0.8124 38 1 3.5333 -2.6320 1.1796 39 1 1.5157 -7.3626 4.6281 40 1 0.1070 -6.7703 6.5503 41 1 -0.6157 -4.4447 6.8948 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:32 Heat of formation + Delta-G solvation = 56.540184 kcal Electronic energy + Delta-G solvation = -27627.552602 eV Core-core repulsion = 23617.857860 eV Total energy + Delta-G solvation = -4009.694743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.47759 -41.97515 -41.85182 -37.49369 -36.51922 -32.78890 -32.44756 -32.39721 -30.81554 -29.51963 -29.04535 -27.30786 -26.17534 -24.18758 -22.52950 -22.28274 -21.28322 -21.08186 -20.15289 -19.55676 -18.10026 -17.25734 -16.92978 -16.28863 -15.89529 -15.81315 -15.50443 -15.27185 -15.04476 -14.76675 -14.51385 -14.09791 -13.89522 -13.78288 -13.14858 -12.95031 -12.40933 -12.26581 -12.24485 -12.04742 -11.97694 -11.68005 -11.42893 -11.19278 -11.02077 -10.86359 -10.78058 -10.43224 -10.25919 -10.02527 -9.67223 -9.59210 -9.28124 -8.35471 -8.31229 -7.95972 -7.78498 -7.39905 -5.95852 -4.03229 0.97303 1.49055 2.25558 2.94075 3.10679 3.25798 3.31903 3.40793 3.41173 3.55371 3.85261 4.26177 4.45396 4.46628 4.80637 4.96282 5.14544 5.19260 5.26413 5.33773 5.37286 5.44854 5.59370 5.64747 5.69502 5.77813 5.80582 6.10463 6.17511 6.26039 6.33483 6.39303 6.45311 6.51687 6.63268 6.67433 6.95273 7.07968 7.15313 7.52972 7.58119 7.70735 7.85383 7.97948 8.09934 8.25408 8.28933 9.02098 9.61844 11.10916 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.004494 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.260091 B = 6229.601853 C = 8132.100748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.073 3.927 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.178 3.822 10 N -0.538 5.538 11 C 0.140 3.860 12 C 0.009 3.991 13 C -0.186 4.186 14 C -0.212 4.212 15 C -0.063 4.063 16 O -0.179 6.179 17 C 0.128 3.872 18 C 0.320 3.680 19 N -0.451 5.451 20 C 0.015 3.985 21 C 0.070 3.930 22 C -0.124 4.124 23 C -0.084 4.084 24 C -0.175 4.175 25 C 0.157 3.843 26 F -0.127 7.127 27 N -0.594 5.594 28 H 0.422 0.578 29 H 0.261 0.739 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -14.336 3.276 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.053 3.947 10 N -0.263 5.263 11 C 0.013 3.987 12 C -0.041 4.041 13 C -0.206 4.206 14 C -0.232 4.232 15 C -0.131 4.131 16 O -0.076 6.076 17 C -0.002 4.002 18 C 0.052 3.948 19 N -0.170 5.170 20 C -0.105 4.105 21 C -0.042 4.042 22 C -0.145 4.145 23 C -0.104 4.104 24 C -0.196 4.196 25 C 0.136 3.864 26 F -0.106 7.106 27 N -0.205 5.205 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.210 0.790 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.988 -13.938 3.314 14.872 hybrid contribution 0.670 0.975 -0.233 1.206 sum 4.658 -12.963 3.081 14.115 Atomic orbital electron populations 1.69953 1.05963 1.26526 1.49624 1.24843 0.94614 0.98790 0.94839 0.86681 0.80072 0.84496 0.77567 1.19908 1.21173 1.20970 1.21501 0.92739 0.91862 1.52201 0.92691 1.20009 0.90863 0.84571 0.99251 1.62552 1.16283 1.48894 0.98557 1.20316 0.91575 1.01444 0.85389 1.22243 1.02072 0.81696 0.98075 1.21765 0.99498 1.01413 0.97925 1.21820 1.04485 0.93944 1.02929 1.23781 0.96964 0.98060 0.94253 1.83954 1.49895 1.33296 1.40428 1.20489 0.92292 1.02058 0.85370 1.23692 0.96124 0.78716 0.96250 1.70769 1.11993 1.30968 1.03229 1.19079 1.03277 0.90836 0.97282 1.18593 0.98580 0.96271 0.90778 1.19898 1.02263 0.97437 0.94951 1.20562 0.97413 0.95405 0.97047 1.20778 1.05346 0.92512 1.00955 1.16885 0.96342 0.79499 0.93642 1.91524 1.88381 1.36215 1.94449 1.43198 1.44554 1.11023 1.21721 0.73916 0.92963 0.93918 0.93704 0.91223 0.90030 0.82852 0.84200 0.79000 0.90510 0.88946 0.85717 0.84699 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.54 -14.22 7.34 -34.44 -0.25 -14.47 16 8 H 0.06 1.38 5.95 -52.48 -0.31 1.07 16 9 C 0.18 4.46 4.73 -4.97 -0.02 4.43 16 10 N -0.54 -10.67 4.65 -238.97 -1.11 -11.78 16 11 C 0.14 2.48 5.31 -4.98 -0.03 2.46 16 12 C 0.01 0.18 6.23 -35.62 -0.22 -0.05 16 13 C -0.19 -3.64 9.33 -39.70 -0.37 -4.01 16 14 C -0.21 -3.56 10.91 -39.70 -0.43 -3.99 16 15 C -0.06 -0.95 12.09 29.42 0.36 -0.60 16 16 O -0.18 -3.16 10.65 5.70 0.06 -3.10 16 17 C 0.13 2.21 5.43 -4.98 -0.03 2.18 16 18 C 0.32 5.85 7.05 -154.81 -1.09 4.75 16 19 N -0.45 -9.87 10.31 -8.20 -0.08 -9.96 16 20 C 0.02 0.30 7.21 -84.64 -0.61 -0.31 16 21 C 0.07 1.07 7.30 -84.00 -0.61 0.46 16 22 C -0.12 -1.47 10.06 -39.50 -0.40 -1.86 16 23 C -0.08 -0.92 10.02 -39.54 -0.40 -1.32 16 24 C -0.17 -2.29 9.99 -39.54 -0.40 -2.69 16 25 C 0.16 2.78 7.34 -39.10 -0.29 2.49 16 26 F -0.13 -2.51 17.27 2.25 0.04 -2.47 16 27 N -0.59 -8.56 6.23 -8.00 -0.05 -8.61 16 28 H 0.42 4.38 8.96 -40.82 -0.37 4.02 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.04 1.18 6.15 -51.93 -0.32 0.86 16 31 H 0.04 1.29 6.71 -51.93 -0.35 0.94 16 32 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 33 H 0.08 1.51 6.58 -51.93 -0.34 1.17 16 34 H 0.15 3.28 8.06 -52.49 -0.42 2.86 16 35 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.19 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.08 0.99 7.81 -51.93 -0.41 0.58 16 38 H 0.09 1.79 6.16 -51.93 -0.32 1.47 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -33.81 351.91 -9.51 -43.32 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.49 Total: 6.91 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -4.89 Total: -10.60 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.51 Total: -55.74 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.06 Total: -3.10 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.81 -9.51 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.856 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds