Wall clock time and date at job start Tue Mar 31 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 N 1.46501 * 109.46983 * 119.99908 * 2 1 3 5 5 C 1.46494 * 120.00156 * 299.99829 * 4 2 1 6 6 C 1.50702 * 109.47446 * 270.00095 * 5 4 2 7 7 H 1.08005 * 119.99851 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00337 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99929 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 119.99893 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47196 * 89.99969 * 10 8 6 12 12 H 1.48503 * 109.47412 * 209.99607 * 10 8 6 13 13 H 1.48499 * 109.47548 * 329.99784 * 10 8 6 14 14 C 1.34775 * 119.99795 * 120.00201 * 4 2 1 15 15 O 1.21289 * 120.00036 * 179.97438 * 14 4 2 16 16 C 1.50701 * 120.00132 * 359.97438 * 14 4 2 17 17 C 1.50707 * 109.46841 * 180.02562 * 16 14 4 18 18 C 1.38258 * 119.99993 * 270.21174 * 17 16 14 19 19 C 1.38211 * 119.99779 * 180.26160 * 18 17 16 20 20 C 1.38256 * 120.00062 * 359.50247 * 19 18 17 21 21 C 1.38215 * 120.00141 * 0.28711 * 20 19 18 22 22 C 1.50700 * 120.00244 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.46773 * 359.97438 * 22 21 20 24 24 F 1.39897 * 109.47450 * 119.99670 * 22 21 20 25 25 F 1.39898 * 109.46871 * 239.99865 * 22 21 20 26 26 C 1.38211 * 119.99838 * 89.99962 * 17 16 14 27 27 H 1.08999 * 109.46919 * 300.00317 * 1 2 3 28 28 H 1.09000 * 109.47060 * 60.00359 * 1 2 3 29 29 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47427 * 239.99723 * 2 1 3 31 31 H 1.09006 * 109.47261 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47245 * 299.99959 * 3 2 1 33 33 H 1.08999 * 109.47470 * 60.00020 * 3 2 1 34 34 H 1.09003 * 109.47275 * 29.99794 * 5 4 2 35 35 H 1.08996 * 109.47351 * 150.00132 * 5 4 2 36 36 H 0.96997 * 120.00115 * 180.02562 * 9 8 6 37 37 H 1.08993 * 109.47064 * 60.00229 * 16 14 4 38 38 H 1.08996 * 109.46910 * 299.99555 * 16 14 4 39 39 H 1.07998 * 119.99837 * 0.04203 * 18 17 16 40 40 H 1.08002 * 120.00200 * 179.78851 * 19 18 17 41 41 H 1.07999 * 120.00077 * 180.25932 * 20 19 18 42 42 H 1.08001 * 120.00363 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5428 1.0363 2.3454 8 6 2.5812 1.4108 4.2140 9 7 3.4880 2.2761 4.6123 10 14 1.1287 1.0059 5.3165 11 1 1.4781 -0.1394 6.1949 12 1 0.7970 2.1876 6.1524 13 1 -0.0439 0.6474 4.4788 14 6 2.7932 -1.7864 1.0725 15 8 3.1979 -2.3579 2.0628 16 6 3.1568 -2.3016 -0.2962 17 6 4.0228 -3.5272 -0.1578 18 6 5.3977 -3.3981 -0.0902 19 6 6.1922 -4.5225 0.0312 20 6 5.6116 -5.7756 0.0955 21 6 4.2369 -5.9043 0.0323 22 6 3.6040 -7.2702 0.1017 23 9 4.6032 -8.2413 0.2274 24 9 2.7504 -7.3330 1.2083 25 9 2.8710 -7.5044 -1.0666 26 6 3.4424 -4.7799 -0.0941 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.6904 0.2975 2.4844 35 1 1.6238 -1.0225 3.2291 36 1 3.4023 2.7043 5.4785 37 1 3.7016 -1.5310 -0.8415 38 1 2.2483 -2.5587 -0.8408 39 1 5.8510 -2.4189 -0.1359 40 1 7.2664 -4.4219 0.0806 41 1 6.2322 -6.6538 0.1946 42 1 2.3682 -4.8805 -0.1439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084597257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:12 Heat of formation + Delta-G solvation = -164.287180 kcal Electronic energy + Delta-G solvation = -28441.824574 eV Core-core repulsion = 23971.864852 eV Total energy + Delta-G solvation = -4469.959722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.24879 -47.78317 -47.69031 -40.00919 -38.83968 -36.09644 -33.30996 -32.65269 -31.81396 -31.04503 -28.96951 -26.97420 -26.75496 -26.12181 -22.88650 -22.36091 -21.65482 -21.07982 -18.56852 -18.53489 -18.45338 -17.72796 -16.92259 -16.83509 -16.36721 -15.62405 -15.33496 -14.63944 -14.61798 -14.43263 -14.30182 -14.15723 -13.96671 -13.89329 -13.86700 -13.63306 -13.53370 -13.20248 -12.79851 -12.69008 -12.64488 -12.49024 -11.96854 -11.85344 -11.72893 -11.52001 -11.30607 -11.22498 -10.96872 -10.89036 -10.53308 -10.38729 -10.11744 -9.49276 -9.29723 -9.20646 -8.77834 -8.58765 -7.74804 -6.09336 -4.06764 0.89124 1.17450 2.57133 3.26916 3.27760 3.33054 3.35260 3.37499 3.63060 3.82957 3.93613 4.35014 4.38912 4.58243 4.71958 4.89991 5.00178 5.12609 5.13962 5.21398 5.25393 5.34935 5.44634 5.49305 5.55873 5.67370 5.79394 5.91635 6.03365 6.05074 6.19202 6.21079 6.27317 6.40008 6.47640 6.67345 6.75912 6.93624 6.96927 7.33406 7.61121 8.22838 8.46484 8.90824 8.96409 9.51544 11.03831 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003256 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.668796 B = 8597.783001 C = 8918.798510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.215 3.785 6 C -0.521 4.521 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.508 3.492 15 O -0.532 6.532 16 C -0.107 4.107 17 C -0.055 4.055 18 C -0.069 4.069 19 C -0.119 4.119 20 C -0.079 4.079 21 C -0.185 4.185 22 C 0.509 3.491 23 F -0.180 7.180 24 F -0.175 7.175 25 F -0.179 7.179 26 C -0.056 4.056 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.358 -13.120 -15.380 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.320 5.320 5 C 0.095 3.905 6 C -0.560 4.560 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.147 4.147 17 C -0.056 4.056 18 C -0.087 4.087 19 C -0.137 4.137 20 C -0.097 4.097 21 C -0.186 4.186 22 C 0.455 3.545 23 F -0.161 7.161 24 F -0.156 7.156 25 F -0.161 7.161 26 C -0.074 4.074 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.134 -13.325 -14.676 19.823 hybrid contribution -0.814 -0.220 0.785 1.152 sum -0.948 -13.545 -13.891 19.425 Atomic orbital electron populations 1.22178 0.95632 1.01804 1.02530 1.21060 0.94033 0.94470 0.87674 1.22137 1.01719 0.95258 1.02366 1.48023 1.49494 1.26471 1.07990 1.19623 0.96327 0.95134 0.79414 1.21321 1.09230 1.22439 1.02996 0.90562 1.24840 0.96030 0.94763 0.97362 1.69887 1.34584 1.28414 1.20775 0.86915 0.83476 0.78244 0.81440 1.19994 1.21142 1.19131 1.20127 0.79299 0.80982 0.90187 1.90713 1.52725 1.57978 1.39435 1.20800 1.00393 0.95923 0.97550 1.19336 0.93903 0.93385 0.98953 1.21301 0.93040 0.99356 0.95053 1.21100 1.00392 0.91656 1.00515 1.20937 0.92743 0.98853 0.97143 1.19839 0.95546 0.91408 1.11855 1.18325 0.76290 0.86066 0.73788 1.93148 1.61138 1.66099 1.95729 1.93237 1.71723 1.96834 1.53854 1.93201 1.78424 1.95428 1.49033 1.20665 0.99728 0.91009 0.96044 0.91576 0.91955 0.92853 0.90403 0.92438 0.93194 0.90036 0.95117 0.94793 0.92633 0.87872 0.88278 0.84990 0.84820 0.84740 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.17 37.16 0.34 -1.77 16 2 C 0.13 1.93 3.17 -67.93 -0.22 1.71 16 3 C -0.16 -2.45 8.47 37.16 0.31 -2.13 16 4 N -0.59 -11.31 2.39 -167.47 -0.40 -11.71 16 5 C 0.22 5.06 3.66 -5.20 -0.02 5.05 16 6 C -0.52 -14.31 8.38 -34.44 -0.29 -14.60 16 7 H 0.08 2.28 7.87 -52.48 -0.41 1.87 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 10 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.51 9.68 7.67 -10.99 -0.08 9.59 16 15 O -0.53 -12.63 15.61 5.55 0.09 -12.54 16 16 C -0.11 -1.40 4.14 -29.03 -0.12 -1.52 16 17 C -0.06 -0.75 4.37 -104.62 -0.46 -1.20 16 18 C -0.07 -0.87 9.70 -39.58 -0.38 -1.26 16 19 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 20 C -0.08 -0.89 9.43 -39.58 -0.37 -1.26 16 21 C -0.19 -2.33 5.37 -104.62 -0.56 -2.89 16 22 C 0.51 6.20 3.32 36.01 0.12 6.32 16 23 F -0.18 -2.08 15.97 2.25 0.04 -2.05 16 24 F -0.18 -2.38 17.24 2.25 0.04 -2.34 16 25 F -0.18 -2.13 17.24 2.25 0.04 -2.09 16 26 C -0.06 -0.74 9.25 -39.58 -0.37 -1.11 16 27 H 0.07 0.97 6.66 -51.93 -0.35 0.63 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.89 5.77 -51.93 -0.30 0.59 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 34 H 0.03 0.69 5.48 -51.93 -0.28 0.41 16 35 H 0.03 0.88 6.85 -51.93 -0.36 0.52 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.10 1.14 7.73 -51.93 -0.40 0.74 16 38 H 0.10 1.03 7.73 -51.93 -0.40 0.63 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.24 7.16 -52.49 -0.38 0.87 16 42 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -33.18 359.49 -6.63 -39.81 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.36 Total: 0.01 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.59 Total: -4.83 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.37 Total: -38.07 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.11 Total: -6.48 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.18 -6.63 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084597257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.476 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds