Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46865 * 2 1 4 4 C 1.52998 * 109.47495 * 120.00024 * 2 1 3 5 5 C 1.50699 * 109.47077 * 240.00584 * 2 1 3 6 6 C 1.34331 * 126.44563 * 59.70636 * 5 2 1 7 7 N 1.34485 * 107.66749 * 179.87725 * 6 5 2 8 8 C 1.30259 * 108.69995 * 0.39610 * 7 6 5 9 9 C 1.50704 * 125.61850 * 179.73332 * 8 7 6 10 10 O 1.45202 * 109.46592 * 90.02614 * 9 8 7 11 11 C 1.34703 * 116.99407 * 180.02562 * 10 9 8 12 12 O 1.21475 * 120.00519 * 359.97438 * 11 10 9 13 13 C 1.47775 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.39967 * 120.02628 * 359.72113 * 13 11 10 15 15 C 1.38311 * 120.35091 * 179.78845 * 14 13 11 16 16 C 1.37766 * 120.42032 * 0.47018 * 15 14 13 17 17 C 1.40758 * 120.04688 * 359.78162 * 16 15 14 18 18 C 1.41436 * 120.17381 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00076 * 334.92016 * 18 17 16 20 20 C 1.39930 * 119.99953 * 154.92282 * 18 17 16 21 21 N 1.30827 * 120.00437 * 342.59750 * 20 18 17 22 22 Si 1.86798 * 119.99971 * 162.59943 * 20 18 17 23 23 H 1.48502 * 109.47075 * 59.99994 * 22 20 18 24 24 H 1.48503 * 109.47193 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47338 * 299.99967 * 22 20 18 26 26 C 1.39044 * 120.03278 * 179.97438 * 13 11 10 27 27 O 1.33970 * 108.76099 * 359.75733 * 8 7 6 28 28 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 60.00199 * 1 2 3 30 30 H 1.08997 * 109.46964 * 299.99892 * 1 2 3 31 31 H 1.08994 * 109.46745 * 60.00202 * 3 2 1 32 32 H 1.08996 * 109.46976 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47014 * 299.99957 * 3 2 1 34 34 H 1.08994 * 109.46669 * 60.00019 * 4 2 1 35 35 H 1.08996 * 109.47069 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47083 * 300.00011 * 4 2 1 37 37 H 1.07995 * 126.16602 * 359.97438 * 6 5 2 38 38 H 1.08996 * 109.47064 * 210.01913 * 9 8 7 39 39 H 1.08997 * 109.46812 * 330.02353 * 9 8 7 40 40 H 1.08000 * 119.82216 * 359.97438 * 14 13 11 41 41 H 1.08004 * 119.79603 * 180.23191 * 15 14 13 42 42 H 1.07997 * 119.97425 * 179.76827 * 16 15 14 43 43 H 0.96993 * 120.00650 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.20598 * 359.95251 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0323 -0.7103 -1.2305 6 6 1.7844 -0.3691 -2.5059 7 7 2.4169 -1.2550 -3.2957 8 6 3.0302 -2.1228 -2.5423 9 6 3.8519 -3.2865 -3.0341 10 8 5.2341 -2.8705 -3.1920 11 6 6.1062 -3.7997 -3.6283 12 8 5.7228 -4.9268 -3.8697 13 6 7.5296 -3.4481 -3.8131 14 6 7.9710 -2.1481 -3.5407 15 6 9.3024 -1.8128 -3.7073 16 6 10.2077 -2.7512 -4.1522 17 6 9.7815 -4.0623 -4.4364 18 6 10.7087 -5.0279 -4.8928 19 1 11.6076 -4.7146 -5.4030 20 6 10.4613 -6.3892 -4.6834 21 7 9.5798 -6.7644 -3.7925 22 14 11.3898 -7.6707 -5.6759 23 1 12.8471 -7.5285 -5.4279 24 1 10.9488 -9.0285 -5.2671 25 1 11.1123 -7.4738 -7.1214 26 6 8.4305 -4.4069 -4.2629 27 8 2.8098 -1.8106 -1.2583 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6768 -1.7488 1.2491 35 1 3.1300 -0.7216 1.2489 36 1 1.6768 -0.2074 2.1392 37 1 1.1864 0.4668 -2.8373 38 1 3.7978 -4.1006 -2.3113 39 1 3.4627 -3.6262 -3.9939 40 1 7.2687 -1.4037 -3.1957 41 1 9.6340 -0.8080 -3.4908 42 1 11.2449 -2.4806 -4.2833 43 1 9.4086 -7.7080 -3.6471 44 1 8.0939 -5.4105 -4.4776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095396819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = -56.887116 kcal Electronic energy + Delta-G solvation = -26810.887524 eV Core-core repulsion = 22887.441758 eV Total energy + Delta-G solvation = -3923.445766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.54232 -39.89152 -37.53403 -37.34204 -35.93431 -34.88244 -33.78516 -31.20361 -30.17414 -29.54230 -27.83437 -27.72843 -27.00308 -25.37917 -23.28613 -22.93706 -21.61028 -21.02544 -19.95272 -19.92733 -17.96952 -17.42907 -16.90899 -16.28709 -16.08334 -16.01583 -15.32857 -15.03333 -14.75417 -14.45768 -14.39745 -13.86203 -13.63671 -13.43998 -13.09827 -12.93346 -12.78293 -12.65723 -12.61936 -12.22300 -12.10326 -11.94856 -11.71900 -11.47533 -11.42612 -11.34914 -11.22474 -11.14227 -10.80703 -10.59710 -10.57051 -10.50268 -10.28998 -9.77186 -9.62207 -9.26627 -8.89496 -7.79258 -7.59147 -6.85486 -4.46937 1.14197 1.90009 2.22899 2.48712 2.75847 3.05111 3.06555 3.12497 3.29664 3.51648 3.88296 3.91977 4.21698 4.41266 4.47101 4.54418 4.70799 4.85871 5.06880 5.14856 5.16946 5.26231 5.33563 5.40285 5.41267 5.45010 5.50267 5.58688 5.62145 5.65609 5.83801 5.84724 5.95724 6.08864 6.09947 6.36743 6.54144 6.79531 6.89653 6.92580 7.13607 7.26617 7.57550 7.63508 7.70676 7.86841 8.06160 8.39527 8.41924 8.73302 8.75379 10.10033 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.002295 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.075268 B =12198.450979 C =12662.635244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.017 3.983 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.025 4.025 6 C -0.041 4.041 7 N -0.456 5.456 8 C 0.189 3.811 9 C 0.165 3.835 10 O -0.351 6.351 11 C 0.518 3.482 12 O -0.513 6.513 13 C -0.114 4.114 14 C -0.192 4.192 15 C -0.103 4.103 16 C -0.199 4.199 17 C 0.095 3.905 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.788 5.788 22 Si 0.912 3.088 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.087 4.087 27 O -0.187 6.187 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.183 0.817 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.286 0.714 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 10.750 7.804 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.017 3.983 3 C -0.198 4.198 4 C -0.204 4.204 5 C -0.079 4.079 6 C -0.180 4.180 7 N -0.187 5.187 8 C -0.017 4.017 9 C 0.090 3.910 10 O -0.268 6.268 11 C 0.365 3.635 12 O -0.402 6.402 13 C -0.115 4.115 14 C -0.212 4.212 15 C -0.121 4.121 16 C -0.219 4.219 17 C 0.093 3.907 18 C -0.488 4.488 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.412 5.412 22 Si 0.736 3.264 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.106 4.106 27 O -0.073 6.073 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.200 0.800 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.790 10.114 7.240 20.101 hybrid contribution 0.219 -0.620 0.359 0.749 sum -15.571 9.494 7.599 19.757 Atomic orbital electron populations 1.21937 0.92199 1.02764 1.02808 1.19166 0.95822 0.94308 0.89018 1.21941 1.02022 0.93078 1.02768 1.21889 1.02072 1.00536 0.95874 1.23481 0.97453 0.88631 0.98358 1.23011 1.04420 1.01857 0.88709 1.70456 1.10253 1.03324 1.34623 1.25517 1.00346 0.99021 0.76840 1.20764 0.78814 0.88689 1.02741 1.86656 1.17629 1.43385 1.79117 1.21926 0.86999 0.82047 0.72489 1.90786 1.79363 1.21696 1.48339 1.18771 0.87004 0.96328 1.09419 1.20564 0.95902 0.94817 1.09938 1.20512 0.93232 0.97807 1.00592 1.21202 0.97894 0.95083 1.07751 1.17537 0.91506 0.91917 0.89749 1.19535 1.06052 0.90172 1.33085 0.89924 1.25964 0.94838 1.00089 0.93690 1.69759 1.27773 1.19077 1.24602 0.86296 0.80281 0.78806 0.80993 1.18925 1.20219 1.18674 1.21656 0.91854 0.98485 0.98621 1.84407 1.53597 1.38032 1.31287 0.92072 0.91820 0.91103 0.91089 0.91831 0.91813 0.92004 0.91764 0.91498 0.79973 0.88376 0.86883 0.87964 0.88488 0.88258 0.90320 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.35 37.16 0.31 -0.53 16 2 C 0.02 0.14 0.93 -155.66 -0.15 -0.01 16 3 C -0.14 -0.94 8.36 37.16 0.31 -0.63 16 4 C -0.15 -1.16 8.06 37.16 0.30 -0.86 16 5 C -0.03 -0.29 5.70 -35.69 -0.20 -0.50 16 6 C -0.04 -0.49 11.24 -17.77 -0.20 -0.69 16 7 N -0.46 -6.97 11.29 -11.10 -0.13 -7.09 16 8 C 0.19 2.89 7.98 -12.94 -0.10 2.78 16 9 C 0.17 2.58 6.10 36.01 0.22 2.80 16 10 O -0.35 -6.78 9.44 -40.50 -0.38 -7.16 16 11 C 0.52 11.54 7.90 34.63 0.27 11.81 16 12 O -0.51 -12.14 16.12 -19.25 -0.31 -12.45 16 13 C -0.11 -2.74 5.87 -105.05 -0.62 -3.35 16 14 C -0.19 -4.28 9.62 -38.91 -0.37 -4.66 16 15 C -0.10 -2.23 10.01 -39.73 -0.40 -2.63 16 16 C -0.20 -4.68 9.78 -38.80 -0.38 -5.06 16 17 C 0.10 2.48 5.57 -106.87 -0.59 1.89 16 18 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 19 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 20 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 21 N -0.79 -20.40 10.97 55.55 0.61 -19.79 16 22 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.09 -2.27 8.23 -38.43 -0.32 -2.59 16 27 O -0.19 -2.66 10.24 5.35 0.05 -2.61 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.34 8.01 -51.93 -0.42 -0.07 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.39 8.02 -51.93 -0.42 -0.03 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.10 2.09 7.59 -52.49 -0.40 1.70 16 41 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 44 H 0.14 3.79 5.76 -52.49 -0.30 3.49 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -29.78 379.89 -7.96 -37.74 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.16 Total: 4.90 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.35 Total: -12.67 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.48 Total: -26.88 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.64 Total: -22.22 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.78 -7.96 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095396819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.144 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds