Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48499 * 109.47091 * 269.99889 * 3 2 1 5 5 H 1.48498 * 109.47231 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47119 * 149.99628 * 3 2 1 7 7 C 1.37870 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99937 * 183.24573 * 7 2 1 9 9 C 1.50706 * 120.00044 * 3.24275 * 7 2 1 10 10 C 1.52995 * 115.54909 * 324.25749 * 9 7 2 11 11 O 1.45210 * 109.47233 * 306.25151 * 10 9 7 12 12 C 1.34707 * 116.99743 * 175.24396 * 11 10 9 13 13 O 1.21470 * 120.00341 * 5.17665 * 12 11 10 14 14 C 1.47745 * 119.99632 * 185.17749 * 12 11 10 15 15 C 1.39671 * 120.11673 * 5.19235 * 14 12 11 16 16 C 1.37960 * 119.99237 * 179.97438 * 15 14 12 17 17 C 1.38271 * 120.22665 * 359.72753 * 16 15 14 18 18 C 1.38954 * 120.23270 * 0.54810 * 17 16 15 19 19 N 1.39952 * 119.99821 * 179.72213 * 18 17 16 20 20 C 1.46766 * 124.35017 * 353.31071 * 19 18 17 21 21 C 1.54478 * 105.47555 * 197.03432 * 20 19 18 22 22 C 1.54631 * 101.76512 * 334.58789 * 21 20 19 23 23 C 1.34425 * 124.35240 * 173.33339 * 19 18 17 24 24 O 1.21288 * 124.93529 * 359.54060 * 23 19 18 25 25 C 1.38630 * 120.00609 * 359.45383 * 18 17 16 26 26 C 1.52997 * 117.49780 * 109.92930 * 9 7 2 27 27 C 1.52997 * 117.49758 * 178.58545 * 9 7 2 28 28 H 0.96999 * 119.99764 * 5.00828 * 1 2 3 29 29 H 1.09004 * 109.47097 * 186.25661 * 10 9 7 30 30 H 1.08995 * 109.47751 * 66.25766 * 10 9 7 31 31 H 1.07996 * 120.00205 * 359.96150 * 15 14 12 32 32 H 1.07999 * 119.89182 * 180.02562 * 16 15 14 33 33 H 1.08000 * 119.88094 * 180.27541 * 17 16 15 34 34 H 1.09007 * 110.24240 * 78.03392 * 20 19 18 35 35 H 1.08996 * 110.24356 * 316.04094 * 20 19 18 36 36 H 1.08993 * 110.97144 * 216.46731 * 21 20 19 37 37 H 1.09000 * 110.96479 * 92.70360 * 21 20 19 38 38 H 1.09004 * 110.48688 * 143.47580 * 22 21 20 39 39 H 1.09003 * 110.48376 * 266.11861 * 22 21 20 40 40 H 1.07998 * 120.11273 * 180.29304 * 25 18 17 41 41 H 1.09000 * 117.49767 * 215.00553 * 26 9 7 42 42 H 1.09004 * 117.50011 * 0.02562 * 26 9 7 43 43 H 1.09004 * 117.50158 * 359.97438 * 27 9 7 44 44 H 1.09004 * 117.49884 * 144.97555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0833 -1.1947 0.0535 9 6 1.2529 -2.4981 -0.0727 10 6 -0.0852 -2.5310 0.6683 11 8 0.1147 -2.1208 2.0469 12 6 -0.9856 -2.0001 2.8146 13 8 -2.0714 -2.3209 2.3747 14 6 -0.8716 -1.4775 4.1919 15 6 0.3560 -1.0067 4.6634 16 6 0.4594 -0.5188 5.9497 17 6 -0.6503 -0.4885 6.7740 18 6 -1.8748 -0.9597 6.3165 19 7 -2.9935 -0.9321 7.1570 20 6 -2.9541 -0.5599 8.5761 21 6 -4.2770 -1.0848 9.1768 22 6 -5.1972 -1.1152 7.9345 23 6 -4.2421 -1.2434 6.7683 24 8 -4.5571 -1.5779 5.6459 25 6 -1.9897 -1.4521 5.0257 26 6 1.3633 -3.3054 -1.3677 27 6 2.0762 -3.7874 -0.1018 28 1 -0.4850 0.8368 -0.0733 29 1 -0.4885 -3.5434 0.6454 30 1 -0.7854 -1.8500 0.1845 31 1 1.2240 -1.0249 4.0212 32 1 1.4093 -0.1548 6.3125 33 1 -0.5640 -0.1012 7.7785 34 1 -2.8962 0.5237 8.6804 35 1 -2.1033 -1.0326 9.0665 36 1 -4.6623 -0.3987 9.9309 37 1 -4.1476 -2.0847 9.5909 38 1 -5.8661 -1.9749 7.9761 39 1 -5.7682 -0.1897 7.8599 40 1 -2.9417 -1.8144 4.6668 41 1 0.4826 -3.8599 -1.6918 42 1 1.9800 -2.8934 -2.1665 43 1 3.1616 -3.6923 -0.0684 44 1 1.6647 -4.6589 0.4073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096442789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = -53.136243 kcal Electronic energy + Delta-G solvation = -27818.765087 eV Core-core repulsion = 23895.481972 eV Total energy + Delta-G solvation = -3923.283115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.21899 -39.51845 -38.16649 -36.82234 -36.54658 -34.84010 -33.35519 -32.14157 -31.09284 -29.19021 -28.05750 -26.56180 -25.39095 -23.94226 -23.10845 -22.16310 -21.21773 -20.36706 -19.49171 -19.11437 -17.83082 -17.09294 -16.67203 -16.30902 -16.17924 -15.45770 -15.32174 -15.17444 -14.54981 -14.43647 -14.17496 -13.93541 -13.78999 -13.70259 -13.42914 -13.17802 -13.01621 -12.56191 -12.11890 -11.98125 -11.83573 -11.60128 -11.55466 -11.43979 -11.29896 -11.02527 -10.72878 -10.48827 -10.33162 -10.28090 -9.90275 -9.73220 -9.45589 -9.26361 -8.93667 -8.87698 -8.73177 -8.19823 -7.96950 -5.96496 -4.09071 0.96996 1.39036 2.39396 2.55322 3.22544 3.28490 3.36271 3.38530 3.65644 3.91944 3.99890 4.14844 4.36055 4.38085 4.57640 4.89721 4.93440 5.01507 5.04727 5.06779 5.24129 5.32147 5.36725 5.46306 5.50294 5.51176 5.53410 5.70269 6.00628 6.09825 6.12103 6.26922 6.41930 6.49271 6.55977 6.64104 6.67386 6.74919 6.86001 6.90644 7.02762 7.06649 7.27078 7.50687 7.67144 7.87345 7.94220 8.35863 8.77742 8.90974 9.53145 10.99878 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016894 B = 0.003199 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.976585 B = 8751.266672 C = 9370.577459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.480 4.480 8 H 0.062 0.938 9 C 0.046 3.954 10 C 0.120 3.880 11 O -0.315 6.315 12 C 0.501 3.499 13 O -0.517 6.517 14 C -0.079 4.079 15 C -0.081 4.081 16 C -0.108 4.108 17 C -0.134 4.134 18 C 0.144 3.856 19 N -0.560 5.560 20 C 0.096 3.904 21 C -0.131 4.131 22 C -0.152 4.152 23 C 0.508 3.492 24 O -0.499 6.499 25 C -0.099 4.099 26 C -0.196 4.196 27 C -0.209 4.209 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 0.115 21.377 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.046 3.954 10 C 0.047 3.953 11 O -0.229 6.229 12 C 0.345 3.655 13 O -0.409 6.409 14 C -0.081 4.081 15 C -0.100 4.100 16 C -0.126 4.126 17 C -0.155 4.155 18 C 0.051 3.949 19 N -0.285 5.285 20 C -0.026 4.026 21 C -0.169 4.169 22 C -0.192 4.192 23 C 0.297 3.703 24 O -0.373 6.373 25 C -0.119 4.119 26 C -0.234 4.234 27 C -0.246 4.246 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.135 0.865 31 H 0.165 0.835 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.184 0.816 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.008 -0.043 20.671 21.527 hybrid contribution 0.449 0.886 -0.152 1.005 sum -5.559 0.843 20.520 21.276 Atomic orbital electron populations 1.69795 1.05904 1.26813 1.49479 1.24953 0.94818 0.99142 0.94017 0.86519 0.79791 0.83176 0.78150 1.20642 1.21154 1.19717 1.20463 0.92517 0.88442 1.50267 0.91989 1.18931 0.92428 0.90546 0.93537 1.22873 0.99455 0.96351 0.76579 1.86471 1.33422 1.77774 1.25228 1.20866 0.83138 0.75426 0.86025 1.90761 1.28889 1.46923 1.74311 1.19225 0.94309 1.02383 0.92211 1.21655 0.97626 0.95078 0.95621 1.20925 0.98211 0.99892 0.93604 1.20891 0.91481 1.02519 1.00574 1.17496 0.86337 1.00710 0.90357 1.45747 1.06844 1.64878 1.11044 1.22243 0.99786 1.01092 0.79504 1.22617 0.93720 1.03305 0.97214 1.22340 0.98098 1.05862 0.92938 1.21152 0.83039 0.76324 0.89797 1.90739 1.79502 1.45190 1.21878 1.21671 1.00747 0.98226 0.91300 1.22984 1.01573 1.06203 0.92600 1.22954 0.98507 1.00100 1.03085 0.92729 0.96075 0.86523 0.83541 0.84876 0.85585 0.90123 0.89465 0.88635 0.89580 0.87484 0.87328 0.81620 0.91424 0.89807 0.90341 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.91 10.23 55.43 0.57 -24.35 16 2 C 0.07 1.99 5.34 -17.82 -0.10 1.89 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.48 -13.04 8.78 -34.44 -0.30 -13.34 16 8 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 9 C 0.05 1.17 2.20 -155.66 -0.34 0.83 16 10 C 0.12 3.12 4.38 37.15 0.16 3.28 16 11 O -0.31 -7.94 9.01 -40.51 -0.36 -8.31 16 12 C 0.50 12.06 7.88 34.62 0.27 12.33 16 13 O -0.52 -13.63 16.14 -19.24 -0.31 -13.95 16 14 C -0.08 -1.59 5.87 -105.00 -0.62 -2.21 16 15 C -0.08 -1.38 9.61 -39.15 -0.38 -1.76 16 16 C -0.11 -1.41 10.02 -39.67 -0.40 -1.81 16 17 C -0.13 -1.61 9.40 -39.30 -0.37 -1.98 16 18 C 0.14 2.10 6.59 -83.74 -0.55 1.54 16 19 N -0.56 -6.54 3.14 -112.30 -0.35 -6.90 16 20 C 0.10 0.60 6.24 -3.12 -0.02 0.58 16 21 C -0.13 -0.55 7.18 -25.10 -0.18 -0.73 16 22 C -0.15 -1.06 6.86 -26.74 -0.18 -1.24 16 23 C 0.51 6.55 7.92 -10.86 -0.09 6.46 16 24 O -0.50 -8.97 14.82 5.55 0.08 -8.89 16 25 C -0.10 -1.86 8.83 -38.96 -0.34 -2.20 16 26 C -0.20 -4.43 9.96 -26.70 -0.27 -4.69 16 27 C -0.21 -4.62 9.92 -26.70 -0.26 -4.88 16 28 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 29 H 0.02 0.52 8.08 -51.93 -0.42 0.10 16 30 H 0.12 3.33 5.92 -51.93 -0.31 3.02 16 31 H 0.15 2.60 7.62 -52.49 -0.40 2.20 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.04 7.02 -52.49 -0.37 0.67 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.43 7.73 -51.93 -0.40 0.02 16 36 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.17 3.52 4.87 -52.49 -0.26 3.26 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -34.32 369.89 -9.71 -44.03 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.93 Total: 4.70 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.96 Total: -7.93 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.21 Total: -31.24 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.59 Total: -31.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.32 -9.71 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096442789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.108 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds