Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00199 * 2 1 4 4 H 1.48500 * 109.46797 * 269.99543 * 3 2 1 5 5 H 1.48499 * 109.47542 * 29.99365 * 3 2 1 6 6 H 1.48507 * 109.47188 * 149.99646 * 3 2 1 7 7 C 1.37879 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99561 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47152 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47485 * 179.97438 * 10 9 7 12 12 C 1.47020 * 110.99593 * 66.04775 * 11 10 9 13 13 C 1.53099 * 109.25597 * 182.39624 * 12 11 10 14 14 O 1.43015 * 109.25523 * 303.14914 * 13 12 11 15 15 C 1.43014 * 113.73763 * 58.67421 * 14 13 12 16 16 H 1.09004 * 109.51050 * 61.30698 * 15 14 13 17 17 C 1.50706 * 109.50624 * 181.38848 * 15 14 13 18 18 C 1.38260 * 119.99701 * 25.00597 * 17 15 14 19 19 C 1.38215 * 119.99680 * 180.02562 * 18 17 15 20 20 C 1.38256 * 120.00141 * 359.94722 * 19 18 17 21 21 C 1.38211 * 120.00062 * 0.28711 * 20 19 18 22 22 C 1.38211 * 120.00291 * 205.01791 * 17 15 14 23 23 C 1.50706 * 119.99823 * 0.02562 * 22 17 15 24 24 F 1.39902 * 109.47081 * 179.97438 * 23 22 17 25 25 F 1.39897 * 109.47061 * 299.99472 * 23 22 17 26 26 F 1.39898 * 109.47176 * 59.99453 * 23 22 17 27 27 C 1.47007 * 111.00330 * 189.68553 * 11 10 9 28 28 H 0.97002 * 119.99551 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47189 * 59.99684 * 9 7 2 30 30 H 1.09000 * 109.47301 * 299.99576 * 9 7 2 31 31 H 1.09007 * 109.47283 * 60.00140 * 10 9 7 32 32 H 1.09002 * 109.47709 * 300.00302 * 10 9 7 33 33 H 1.08994 * 109.50438 * 62.45761 * 12 11 10 34 34 H 1.08998 * 109.53767 * 302.35087 * 12 11 10 35 35 H 1.08998 * 109.50566 * 183.22002 * 13 12 11 36 36 H 1.08994 * 109.54212 * 63.10824 * 13 12 11 37 37 H 1.07996 * 119.99860 * 359.97438 * 18 17 15 38 38 H 1.07999 * 119.99782 * 179.97438 * 19 18 17 39 39 H 1.08002 * 119.99676 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.00348 * 179.72205 * 21 20 19 41 41 H 1.08997 * 109.50891 * 57.66979 * 27 11 10 42 42 H 1.09003 * 109.50393 * 297.54431 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 0.7641 -5.1123 -1.2529 13 6 -0.0320 -6.4183 -1.1857 14 8 0.8632 -7.5038 -0.9297 15 6 1.6060 -7.3634 0.2843 16 1 0.9188 -7.3290 1.1297 17 6 2.5391 -8.5363 0.4418 18 6 2.9674 -9.2335 -0.6727 19 6 3.8227 -10.3095 -0.5281 20 6 4.2508 -10.6881 0.7308 21 6 3.8188 -9.9942 1.8453 22 6 2.9664 -8.9153 1.7004 23 6 2.4989 -8.1559 2.9153 24 9 3.0609 -8.7226 4.0643 25 9 2.8975 -6.8190 2.8115 26 9 1.1039 -8.2215 2.9979 27 6 2.4188 -6.0670 0.2321 28 1 -0.4849 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8906 32 1 2.8718 -3.6045 -0.8894 33 1 1.4621 -5.1541 -2.0890 34 1 0.0797 -4.2754 -1.3916 35 1 -0.5418 -6.5830 -2.1349 36 1 -0.7674 -6.3560 -0.3836 37 1 2.6330 -8.9377 -1.6560 38 1 4.1569 -10.8543 -1.3987 39 1 4.9195 -11.5287 0.8436 40 1 4.1496 -10.2927 2.8291 41 1 2.9420 -5.9270 1.1779 42 1 3.1432 -6.1241 -0.5804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096500921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -179.907073 kcal Electronic energy + Delta-G solvation = -29152.104344 eV Core-core repulsion = 24681.467293 eV Total energy + Delta-G solvation = -4470.637052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.32317 -48.82012 -48.77206 -41.27902 -39.87064 -37.30686 -35.07638 -34.11619 -32.86696 -31.88772 -30.77590 -28.30027 -27.03605 -25.84022 -25.19885 -23.59681 -22.91783 -21.92298 -21.36154 -19.62954 -19.53039 -19.40498 -18.64639 -17.56429 -17.35245 -16.95935 -16.63064 -16.28117 -16.05550 -15.97871 -15.78201 -15.51768 -15.39876 -15.18810 -15.11398 -15.04558 -14.88844 -14.76015 -14.48533 -14.18325 -13.87699 -13.75283 -13.51198 -13.24527 -12.86271 -12.84994 -12.52450 -12.44055 -12.26916 -12.12900 -11.89830 -11.67068 -11.40867 -11.29734 -10.80733 -10.55689 -10.22782 -9.88334 -9.36292 -8.21909 -6.33327 -0.13509 0.22585 1.39041 1.40734 1.51903 1.57733 2.37441 2.41362 2.53383 2.67208 2.84237 2.95155 3.11474 3.30292 3.58354 3.76136 3.89523 3.91997 4.00919 4.11031 4.12690 4.25831 4.37403 4.39866 4.46381 4.56418 4.60903 4.63674 4.72608 4.80928 4.87255 4.93575 5.00458 5.19731 5.31526 5.39840 5.41123 5.59190 5.72671 5.80093 5.95087 6.00299 6.10746 6.25790 6.82567 7.35614 8.90175 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.003185 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.794530 B = 8790.371212 C = 9422.237139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.081 3.919 11 N -0.548 5.548 12 C 0.016 3.984 13 C 0.071 3.929 14 O -0.377 6.377 15 C 0.123 3.877 16 H 0.070 0.930 17 C -0.049 4.049 18 C -0.105 4.105 19 C -0.081 4.081 20 C -0.111 4.111 21 C -0.075 4.075 22 C -0.189 4.189 23 C 0.501 3.499 24 F -0.173 7.173 25 F -0.179 7.179 26 F -0.182 7.182 27 C 0.021 3.979 28 H 0.264 0.736 29 H -0.001 1.001 30 H -0.008 1.008 31 H 0.060 0.940 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.057 0.943 37 H 0.139 0.861 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.097 0.903 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 -25.946 0.258 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.046 4.046 11 N -0.273 5.273 12 C -0.112 4.112 13 C -0.006 4.006 14 O -0.296 6.296 15 C 0.065 3.935 16 H 0.088 0.912 17 C -0.050 4.050 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.129 4.129 21 C -0.093 4.093 22 C -0.190 4.190 23 C 0.447 3.553 24 F -0.154 7.154 25 F -0.160 7.160 26 F -0.164 7.164 27 C -0.107 4.107 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.010 0.990 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.189 0.811 40 H 0.174 0.826 41 H 0.115 0.885 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.559 -25.955 0.563 27.039 hybrid contribution 0.305 1.855 -0.105 1.883 sum 7.864 -24.099 0.457 25.354 Atomic orbital electron populations 1.70105 1.07766 1.27826 1.51254 1.25952 0.95777 1.03277 0.94539 0.85425 0.78619 0.78309 0.78551 1.19609 1.20654 1.18838 1.21593 0.93479 0.92238 1.51164 0.92306 1.18895 0.94079 0.91620 0.95247 1.21993 0.95545 0.88032 0.99056 1.62225 1.27826 1.02169 1.35091 1.22833 0.98273 0.99727 0.90366 1.22796 0.90823 0.83742 1.03197 1.87872 1.56616 1.44608 1.40511 1.21008 0.92195 0.91528 0.88784 0.91227 1.19308 0.96740 0.95819 0.93159 1.21193 0.97197 0.95703 0.98233 1.21822 0.93964 0.94710 0.99363 1.21632 0.99759 1.00397 0.91074 1.21284 0.93938 0.92066 1.02040 1.19779 1.06854 1.01699 0.90703 1.18595 0.75026 0.77576 0.84059 1.93155 1.84867 1.84548 1.52810 1.93133 1.90587 1.36627 1.95690 1.93172 1.30574 1.96141 1.96488 1.23053 0.94554 0.90206 1.02893 0.92694 0.98254 0.98970 0.92106 0.95887 0.94232 0.90379 0.85145 0.92501 0.84286 0.81715 0.81098 0.82561 0.88517 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 2.14 4.90 29.85 0.15 2.28 16 10 C 0.08 3.63 4.89 86.30 0.42 4.05 16 11 N -0.55 -21.40 4.73 -895.22 -4.23 -25.63 16 12 C 0.02 0.56 5.43 86.31 0.47 1.03 16 13 C 0.07 1.99 7.01 72.02 0.50 2.49 16 14 O -0.38 -10.77 9.31 -148.98 -1.39 -12.15 16 15 C 0.12 3.60 2.36 29.88 0.07 3.67 16 16 H 0.07 2.24 5.75 -2.38 -0.01 2.22 16 17 C -0.05 -1.19 5.04 -19.86 -0.10 -1.29 16 18 C -0.11 -2.02 9.35 22.27 0.21 -1.81 16 19 C -0.08 -1.00 10.05 22.27 0.22 -0.77 16 20 C -0.11 -1.20 10.05 22.27 0.22 -0.98 16 21 C -0.08 -1.16 9.43 22.27 0.21 -0.95 16 22 C -0.19 -4.17 5.37 -19.86 -0.11 -4.28 16 23 C 0.50 12.68 2.83 71.24 0.20 12.88 16 24 F -0.17 -3.88 15.97 44.97 0.72 -3.16 16 25 F -0.18 -5.28 13.61 44.97 0.61 -4.67 16 26 F -0.18 -5.08 15.33 44.97 0.69 -4.39 16 27 C 0.02 0.69 4.72 86.31 0.41 1.10 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.00 -0.05 6.51 -2.39 -0.02 -0.06 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.06 2.71 8.04 -2.38 -0.02 2.70 16 32 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 3.03 6.37 -2.39 -0.02 3.01 16 35 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.14 2.66 7.35 -2.91 -0.02 2.64 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 40 H 0.16 1.79 7.16 -2.91 -0.02 1.77 16 41 H 0.10 3.27 4.95 -2.39 -0.01 3.25 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -69.12 346.22 3.33 -65.79 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.05 Total: 7.87 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 3.58 Total: -13.52 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.95 Total: -82.58 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.39 Total: -12.15 kcal Atomic # 9 Polarization: -14.24 SS G_CDS: 2.02 Total: -12.22 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.12 3.33 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096500921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.119 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds