Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48501 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46859 * 299.99739 * 3 2 1 6 6 H 1.48493 * 109.46929 * 59.99761 * 3 2 1 7 7 C 1.37883 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99234 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47091 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47024 * 180.02562 * 10 9 7 12 12 C 1.47017 * 110.99993 * 313.63424 * 11 10 9 13 13 C 1.53089 * 109.26033 * 177.61085 * 12 11 10 14 14 O 1.43014 * 109.26046 * 56.84581 * 13 12 11 15 15 C 1.43014 * 113.73916 * 301.33371 * 14 13 12 16 16 H 1.09000 * 109.54215 * 298.71077 * 15 14 13 17 17 C 1.50706 * 109.50702 * 178.60253 * 15 14 13 18 18 C 1.38228 * 119.99983 * 325.42994 * 17 15 14 19 19 C 1.38238 * 120.00110 * 180.21781 * 18 17 15 20 20 C 1.38234 * 119.99675 * 359.52133 * 19 18 17 21 21 C 1.50702 * 120.00257 * 180.25732 * 20 19 18 22 22 F 1.39902 * 109.46957 * 90.00122 * 21 20 19 23 23 F 1.39899 * 109.47593 * 210.00347 * 21 20 19 24 24 F 1.39906 * 109.47101 * 330.00925 * 21 20 19 25 25 C 1.38235 * 120.00220 * 0.28720 * 20 19 18 26 26 C 1.38234 * 119.99892 * 145.21214 * 17 15 14 27 27 C 1.47015 * 110.99994 * 190.00233 * 11 10 9 28 28 H 0.96998 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46696 * 59.99961 * 9 7 2 30 30 H 1.08999 * 109.46715 * 299.99871 * 9 7 2 31 31 H 1.08998 * 109.47127 * 59.99729 * 10 9 7 32 32 H 1.09004 * 109.47339 * 300.00151 * 10 9 7 33 33 H 1.09003 * 109.50602 * 297.54522 * 12 11 10 34 34 H 1.08996 * 109.50475 * 57.67148 * 12 11 10 35 35 H 1.08999 * 109.50970 * 176.78268 * 13 12 11 36 36 H 1.09003 * 109.50821 * 296.86789 * 13 12 11 37 37 H 1.08004 * 120.00281 * 0.02562 * 18 17 15 38 38 H 1.08002 * 120.00519 * 179.80752 * 19 18 17 39 39 H 1.07996 * 120.00471 * 179.97438 * 25 20 19 40 40 H 1.08001 * 120.00324 * 0.02562 * 26 17 15 41 41 H 1.08996 * 109.50693 * 62.45014 * 27 11 10 42 42 H 1.09008 * 109.53983 * 302.34468 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 0.4268 -4.9173 0.9929 13 6 -0.3480 -6.2355 0.9174 14 8 0.5550 -7.3257 1.1203 15 6 1.6230 -7.3732 0.1703 16 1 1.2139 -7.4986 -0.8322 17 6 2.5314 -8.5319 0.4917 18 6 2.7507 -8.8939 1.8076 19 6 3.5874 -9.9539 2.1026 20 6 4.1971 -10.6582 1.0813 21 6 5.1047 -11.8176 1.4026 22 9 4.3544 -12.9973 1.4526 23 9 6.0857 -11.9305 0.4116 24 9 5.7166 -11.6012 2.6420 25 6 3.9746 -10.2988 -0.2349 26 6 3.1417 -9.2357 -0.5296 27 6 2.4178 -6.0665 0.2383 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8720 -3.6044 -0.8895 33 1 0.8492 -4.8000 1.9909 34 1 -0.2468 -4.0866 0.7823 35 1 -1.1165 -6.2508 1.6902 36 1 -0.8158 -6.3271 -0.0629 37 1 2.2707 -8.3465 2.6054 38 1 3.7613 -10.2348 3.1309 39 1 4.4512 -10.8488 -1.0328 40 1 2.9679 -8.9549 -1.5579 41 1 2.8720 -5.9676 1.2241 42 1 3.1981 -6.0750 -0.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096501286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -169.315837 kcal Electronic energy + Delta-G solvation = -27556.244570 eV Core-core repulsion = 23086.066789 eV Total energy + Delta-G solvation = -4470.177781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.44410 -47.96180 -47.90656 -40.30167 -38.91829 -35.93896 -33.52068 -32.99792 -31.42966 -30.30039 -29.94733 -27.27652 -25.74478 -23.91347 -23.76913 -23.18794 -21.88754 -20.61023 -19.70493 -18.80272 -18.74369 -18.63977 -16.94971 -16.32315 -16.28852 -15.67129 -15.10966 -14.93051 -14.80363 -14.77022 -14.72405 -14.51662 -14.36980 -14.32536 -14.16216 -14.07082 -14.04403 -13.65198 -13.44675 -13.13081 -12.77823 -12.41823 -12.16085 -11.80091 -11.62893 -11.48032 -11.25536 -11.08668 -10.94920 -10.58338 -10.49138 -10.05262 -9.78888 -9.54237 -9.36870 -9.17179 -9.09556 -8.42310 -7.91893 -6.07822 -4.10266 0.56059 0.96865 2.36681 3.10895 3.26535 3.34320 3.38115 3.41395 3.65392 3.73118 4.12423 4.16965 4.42477 4.50913 4.54151 4.68329 4.91119 5.02686 5.09272 5.17604 5.27427 5.29726 5.32142 5.45533 5.51106 5.60026 5.67445 5.83361 5.84438 5.93119 6.01304 6.18119 6.21281 6.31803 6.35348 6.43764 6.80028 7.13660 7.29356 7.41502 7.62977 7.74627 7.94379 8.33794 8.96158 9.54063 11.03589 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002165 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.343256 B =12931.500781 C =13539.467277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.537 5.537 12 C 0.013 3.987 13 C 0.065 3.935 14 O -0.382 6.382 15 C 0.130 3.870 16 H 0.080 0.920 17 C -0.042 4.042 18 C -0.093 4.093 19 C -0.073 4.073 20 C -0.187 4.187 21 C 0.509 3.491 22 F -0.178 7.178 23 F -0.178 7.178 24 F -0.178 7.178 25 C -0.071 4.071 26 C -0.109 4.109 27 C 0.030 3.970 28 H 0.261 0.739 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.040 0.960 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -23.816 1.972 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.262 5.262 12 C -0.115 4.115 13 C -0.011 4.011 14 O -0.302 6.302 15 C 0.072 3.928 16 H 0.098 0.902 17 C -0.043 4.043 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.189 4.189 21 C 0.455 3.545 22 F -0.159 7.159 23 F -0.159 7.159 24 F -0.159 7.159 25 C -0.090 4.090 26 C -0.127 4.127 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.058 0.942 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.372 -23.914 1.664 24.567 hybrid contribution 1.039 1.117 0.681 1.671 sum 6.411 -22.797 2.346 23.798 Atomic orbital electron populations 1.69966 1.06031 1.26620 1.50626 1.24996 0.94861 0.99273 0.95175 0.86520 0.80092 0.83670 0.77634 1.19747 1.20920 1.20996 1.21196 0.93062 0.90903 1.50946 0.92669 1.19237 0.94080 0.90484 0.97795 1.22366 0.97086 0.87669 0.99274 1.62371 1.11804 1.03775 1.48278 1.22882 0.95572 0.98837 0.94201 1.22768 0.91341 0.85024 1.01995 1.87915 1.38876 1.49661 1.53709 1.20939 0.86959 0.91576 0.93292 0.90211 1.19934 0.95535 0.95071 0.93768 1.21063 0.96788 0.96333 0.96910 1.20964 0.94838 0.94515 0.98774 1.19968 1.03779 0.98699 0.96416 1.18330 0.79173 0.82770 0.74232 1.93226 1.76215 1.50353 1.96125 1.93189 1.64396 1.96455 1.61890 1.93193 1.84243 1.94767 1.43703 1.20864 0.96810 0.96576 0.94709 1.20982 0.97126 0.94896 0.99703 1.22690 0.95587 0.90740 1.00891 0.92966 0.95637 0.96164 0.95961 0.91664 0.94351 0.87715 0.88392 0.92202 0.84168 0.84659 0.84547 0.84393 0.94197 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.53 4.24 -27.89 -0.12 0.41 16 10 C 0.06 1.27 5.22 -3.83 -0.02 1.25 16 11 N -0.54 -9.24 4.88 -234.32 -1.14 -10.38 16 12 C 0.01 0.21 4.94 -3.71 -0.02 0.20 16 13 C 0.07 0.86 7.01 37.20 0.26 1.12 16 14 O -0.38 -5.13 9.60 -35.23 -0.34 -5.47 16 15 C 0.13 1.60 3.02 -27.83 -0.08 1.52 16 16 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 17 C -0.04 -0.46 5.01 -104.62 -0.52 -0.98 16 18 C -0.09 -0.97 9.35 -39.59 -0.37 -1.34 16 19 C -0.07 -0.69 9.40 -39.58 -0.37 -1.06 16 20 C -0.19 -1.78 5.45 -104.62 -0.57 -2.35 16 21 C 0.51 4.80 3.36 36.01 0.12 4.92 16 22 F -0.18 -1.76 17.30 2.25 0.04 -1.72 16 23 F -0.18 -1.70 16.46 2.25 0.04 -1.66 16 24 F -0.18 -1.74 16.46 2.25 0.04 -1.70 16 25 C -0.07 -0.62 9.40 -39.58 -0.37 -1.00 16 26 C -0.11 -0.99 9.68 -39.58 -0.38 -1.37 16 27 C 0.03 0.42 4.89 -3.71 -0.02 0.40 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.52 6.28 -51.93 -0.33 0.20 16 31 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.91 6.05 -51.93 -0.31 1.59 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.14 1.45 7.62 -52.48 -0.40 1.05 16 38 H 0.14 1.06 7.60 -52.49 -0.40 0.66 16 39 H 0.14 0.93 7.60 -52.49 -0.40 0.53 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -29.64 356.79 -8.76 -38.40 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.60 Total: -2.21 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.88 Total: -11.46 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.41 Total: -35.79 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.34 Total: -5.47 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.64 -8.76 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096501286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.920 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds