Wall clock time and date at job start Tue Mar 31 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48501 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46859 * 299.99739 * 3 2 1 6 6 H 1.48493 * 109.46929 * 59.99761 * 3 2 1 7 7 C 1.37883 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99234 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47091 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47024 * 180.02562 * 10 9 7 12 12 C 1.47017 * 110.99993 * 313.63424 * 11 10 9 13 13 C 1.53089 * 109.26033 * 177.61085 * 12 11 10 14 14 O 1.43014 * 109.26046 * 56.84581 * 13 12 11 15 15 C 1.43014 * 113.73916 * 301.33371 * 14 13 12 16 16 H 1.09000 * 109.54215 * 298.71077 * 15 14 13 17 17 C 1.50706 * 109.50702 * 178.60253 * 15 14 13 18 18 C 1.38228 * 119.99983 * 325.42994 * 17 15 14 19 19 C 1.38238 * 120.00110 * 180.21781 * 18 17 15 20 20 C 1.38234 * 119.99675 * 359.52133 * 19 18 17 21 21 C 1.50702 * 120.00257 * 180.25732 * 20 19 18 22 22 F 1.39902 * 109.46957 * 90.00122 * 21 20 19 23 23 F 1.39899 * 109.47593 * 210.00347 * 21 20 19 24 24 F 1.39906 * 109.47101 * 330.00925 * 21 20 19 25 25 C 1.38235 * 120.00220 * 0.28720 * 20 19 18 26 26 C 1.38234 * 119.99892 * 145.21214 * 17 15 14 27 27 C 1.47015 * 110.99994 * 190.00233 * 11 10 9 28 28 H 0.96998 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46696 * 59.99961 * 9 7 2 30 30 H 1.08999 * 109.46715 * 299.99871 * 9 7 2 31 31 H 1.08998 * 109.47127 * 59.99729 * 10 9 7 32 32 H 1.09004 * 109.47339 * 300.00151 * 10 9 7 33 33 H 1.09003 * 109.50602 * 297.54522 * 12 11 10 34 34 H 1.08996 * 109.50475 * 57.67148 * 12 11 10 35 35 H 1.08999 * 109.50970 * 176.78268 * 13 12 11 36 36 H 1.09003 * 109.50821 * 296.86789 * 13 12 11 37 37 H 1.08004 * 120.00281 * 0.02562 * 18 17 15 38 38 H 1.08002 * 120.00519 * 179.80752 * 19 18 17 39 39 H 1.07996 * 120.00471 * 179.97438 * 25 20 19 40 40 H 1.08001 * 120.00324 * 0.02562 * 26 17 15 41 41 H 1.08996 * 109.50693 * 62.45014 * 27 11 10 42 42 H 1.09008 * 109.53983 * 302.34468 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 -0.0001 12 6 0.4268 -4.9173 0.9929 13 6 -0.3480 -6.2355 0.9174 14 8 0.5550 -7.3257 1.1203 15 6 1.6230 -7.3732 0.1703 16 1 1.2139 -7.4986 -0.8322 17 6 2.5314 -8.5319 0.4917 18 6 2.7507 -8.8939 1.8076 19 6 3.5874 -9.9539 2.1026 20 6 4.1971 -10.6582 1.0813 21 6 5.1047 -11.8176 1.4026 22 9 4.3544 -12.9973 1.4526 23 9 6.0857 -11.9305 0.4116 24 9 5.7166 -11.6012 2.6420 25 6 3.9746 -10.2988 -0.2349 26 6 3.1417 -9.2357 -0.5296 27 6 2.4178 -6.0665 0.2383 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8720 -3.6044 -0.8895 33 1 0.8492 -4.8000 1.9909 34 1 -0.2468 -4.0866 0.7823 35 1 -1.1165 -6.2508 1.6902 36 1 -0.8158 -6.3271 -0.0629 37 1 2.2707 -8.3465 2.6054 38 1 3.7613 -10.2348 3.1309 39 1 4.4512 -10.8488 -1.0328 40 1 2.9679 -8.9549 -1.5579 41 1 2.8720 -5.9676 1.2241 42 1 3.1981 -6.0750 -0.5228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096501286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:44 Heat of formation + Delta-G solvation = -185.821101 kcal Electronic energy + Delta-G solvation = -27556.960292 eV Core-core repulsion = 23086.066789 eV Total energy + Delta-G solvation = -4470.893503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.19063 -48.70812 -48.65847 -41.24735 -39.89514 -37.33177 -35.03685 -34.37086 -32.14365 -31.82548 -31.22351 -28.54895 -26.99535 -25.35897 -24.96909 -23.97094 -23.04003 -21.78155 -21.12833 -19.53982 -19.47770 -19.38986 -18.70595 -17.60989 -17.31843 -16.73938 -16.59818 -16.14616 -15.92759 -15.82592 -15.69521 -15.50809 -15.32183 -15.12668 -15.09311 -14.89565 -14.81949 -14.78802 -14.35372 -14.34944 -14.18897 -13.85066 -13.38596 -13.23902 -12.91455 -12.80453 -12.53377 -12.45900 -12.23667 -12.19712 -11.97175 -11.61174 -11.33919 -11.23952 -10.77201 -10.56358 -10.07134 -10.04545 -9.34416 -8.22365 -6.32981 -0.19404 0.26510 1.39425 1.40132 1.52854 1.62930 2.32267 2.39304 2.64710 2.73604 2.91273 3.00024 3.11575 3.39775 3.68849 3.80159 3.86048 3.93028 4.02666 4.12346 4.19350 4.31936 4.33694 4.41308 4.51861 4.58014 4.64047 4.66152 4.77961 4.88247 4.91807 4.97511 5.00693 5.12606 5.14835 5.41750 5.43268 5.60244 5.71359 5.74173 5.96409 6.06282 6.15994 6.26559 6.83098 7.36125 8.89606 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002165 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.343256 B =12931.500781 C =13539.467277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.031 3.969 10 C 0.078 3.922 11 N -0.542 5.542 12 C 0.015 3.985 13 C 0.074 3.926 14 O -0.386 6.386 15 C 0.136 3.864 16 H 0.089 0.911 17 C -0.055 4.055 18 C -0.102 4.102 19 C -0.075 4.075 20 C -0.192 4.192 21 C 0.513 3.487 22 F -0.181 7.181 23 F -0.178 7.178 24 F -0.181 7.181 25 C -0.070 4.070 26 C -0.105 4.105 27 C 0.031 3.969 28 H 0.264 0.736 29 H -0.003 1.003 30 H 0.002 0.998 31 H 0.019 0.981 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.033 0.967 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -24.806 1.548 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.049 4.049 11 N -0.267 5.267 12 C -0.114 4.114 13 C -0.003 4.003 14 O -0.305 6.305 15 C 0.078 3.922 16 H 0.106 0.894 17 C -0.056 4.056 18 C -0.120 4.120 19 C -0.093 4.093 20 C -0.194 4.194 21 C 0.459 3.541 22 F -0.162 7.162 23 F -0.159 7.159 24 F -0.162 7.162 25 C -0.088 4.088 26 C -0.123 4.123 27 C -0.097 4.097 28 H 0.073 0.927 29 H 0.015 0.985 30 H 0.020 0.980 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.177 0.823 41 H 0.051 0.949 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.495 -24.927 1.243 25.789 hybrid contribution 0.696 1.362 0.820 1.735 sum 7.191 -23.566 2.062 24.724 Atomic orbital electron populations 1.70089 1.07658 1.27752 1.51396 1.25915 0.95763 1.03170 0.94637 0.85415 0.79045 0.78875 0.77807 1.18730 1.20300 1.20420 1.21629 0.93487 0.92293 1.50896 0.92365 1.19045 0.94258 0.91857 0.95482 1.22021 0.95849 0.87883 0.99190 1.62321 1.12274 1.03297 1.48823 1.22841 0.95164 1.00006 0.93350 1.22743 0.91161 0.83130 1.03233 1.87926 1.39148 1.49210 1.54253 1.20942 0.86656 0.91055 0.93558 0.89353 1.19881 0.96101 0.95181 0.94404 1.21084 0.97271 0.96801 0.96862 1.21088 0.94511 0.94175 0.99572 1.20092 1.03729 0.98639 0.96913 1.18298 0.79089 0.82660 0.74094 1.93222 1.76284 1.50554 1.96131 1.93189 1.64415 1.96453 1.61863 1.93188 1.84306 1.94772 1.43929 1.21130 0.96376 0.96372 0.94945 1.21203 0.96355 0.94400 1.00331 1.22775 0.95612 0.90393 1.00904 0.92706 0.98466 0.97958 0.96317 0.91361 0.95317 0.90369 0.86255 0.91575 0.84635 0.83460 0.82515 0.82302 0.94870 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.00 0.19 5.46 84.66 0.46 0.66 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.28 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.59 4.24 29.85 0.13 1.72 16 10 C 0.08 3.20 5.22 86.30 0.45 3.65 16 11 N -0.54 -18.68 4.88 -895.24 -4.37 -23.05 16 12 C 0.01 0.49 4.94 86.31 0.43 0.91 16 13 C 0.07 1.89 7.01 72.01 0.50 2.39 16 14 O -0.39 -9.85 9.60 -148.98 -1.43 -11.28 16 15 C 0.14 3.12 3.02 29.88 0.09 3.21 16 16 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 17 C -0.06 -1.08 5.01 -19.87 -0.10 -1.18 16 18 C -0.10 -2.00 9.35 22.27 0.21 -1.79 16 19 C -0.08 -1.31 9.40 22.27 0.21 -1.10 16 20 C -0.19 -3.27 5.45 -19.87 -0.11 -3.38 16 21 C 0.51 8.78 3.36 71.24 0.24 9.02 16 22 F -0.18 -3.28 17.30 44.97 0.78 -2.50 16 23 F -0.18 -3.06 16.46 44.97 0.74 -2.32 16 24 F -0.18 -3.28 16.46 44.97 0.74 -2.54 16 25 C -0.07 -1.04 9.40 22.27 0.21 -0.84 16 26 C -0.11 -1.63 9.68 22.27 0.22 -1.42 16 27 C 0.03 0.85 4.89 86.31 0.42 1.28 16 28 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.00 0.12 6.28 -2.39 -0.01 0.10 16 31 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 3.01 6.05 -2.39 -0.01 2.99 16 35 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.14 2.72 7.62 -2.91 -0.02 2.69 16 38 H 0.15 2.10 7.60 -2.91 -0.02 2.08 16 39 H 0.16 1.65 7.60 -2.91 -0.02 1.63 16 40 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -63.63 356.79 3.40 -60.23 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.03 Total: 8.04 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 3.59 Total: -17.15 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -4.08 Total: -78.16 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.43 Total: -11.28 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 2.26 Total: -7.35 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -63.63 3.40 -60.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096501286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.590 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds