Wall clock time and date at job start Tue Mar 31 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.37612 * 120.00017 * 117.41828 * 3 2 1 5 5 C 1.41839 * 120.00072 * 190.23842 * 4 3 2 6 6 C 1.37793 * 126.86173 * 46.49659 * 5 4 3 7 7 N 1.35646 * 109.47429 * 179.97438 * 6 5 4 8 8 C 1.46503 * 124.73385 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47368 * 260.14248 * 8 7 6 10 10 H 1.08000 * 120.00154 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99891 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00042 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99986 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47265 * 60.00179 * 13 11 9 15 15 H 1.48500 * 109.46778 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47020 * 299.99946 * 13 11 9 17 17 C 1.38003 * 110.53805 * 0.02562 * 7 6 5 18 18 C 1.39168 * 132.96099 * 179.97438 * 17 7 6 19 19 C 1.37779 * 119.94360 * 179.24401 * 18 17 7 20 20 C 1.38739 * 120.63025 * 0.61636 * 19 18 17 21 21 C 1.37775 * 120.28228 * 359.62437 * 20 19 18 22 22 C 1.39248 * 119.68650 * 359.97438 * 21 20 19 23 23 C 1.47924 * 120.00024 * 297.41202 * 3 2 1 24 24 C 1.39589 * 119.74911 * 8.27966 * 23 3 2 25 25 C 1.38276 * 119.05480 * 179.97438 * 24 23 3 26 26 C 1.38887 * 118.53693 * 0.02562 * 25 24 23 27 27 C 1.38197 * 119.41018 * 0.24927 * 26 25 24 28 28 N 1.31800 * 120.91436 * 359.45557 * 27 26 25 29 29 H 1.07999 * 120.00174 * 10.23993 * 4 3 2 30 30 H 1.07996 * 125.26260 * 359.97438 * 6 5 4 31 31 H 1.09007 * 109.46525 * 20.14287 * 8 7 6 32 32 H 1.08998 * 109.47154 * 140.13712 * 8 7 6 33 33 H 0.96996 * 119.99842 * 179.97438 * 12 11 9 34 34 H 1.07999 * 120.02679 * 0.02562 * 18 17 7 35 35 H 1.08000 * 119.67865 * 180.19543 * 19 18 17 36 36 H 1.08004 * 119.85474 * 179.60198 * 20 19 18 37 37 H 1.08001 * 120.15540 * 180.02562 * 21 20 19 38 38 H 1.07992 * 120.47423 * 0.02562 * 24 23 3 39 39 H 1.08000 * 120.73286 * 180.02562 * 25 24 23 40 40 H 1.07996 * 120.29667 * 179.97438 * 26 25 24 41 41 H 1.08004 * 119.54502 * 179.72717 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2558 0.5497 -1.0579 5 6 4.6574 0.3611 -1.1671 6 6 5.3463 -0.8227 -1.0163 7 7 6.6723 -0.6002 -1.1954 8 6 7.7107 -1.6301 -1.1091 9 6 8.3782 -1.5586 0.2401 10 1 8.0611 -0.8197 0.9610 11 6 9.3939 -2.4367 0.5540 12 7 9.7797 -3.3369 -0.3237 13 14 10.2218 -2.3477 2.2262 14 1 9.2117 -2.5720 3.2913 15 1 11.2742 -3.3917 2.3136 16 1 10.8382 -1.0082 2.4026 17 6 6.9071 0.7319 -1.4691 18 6 8.0667 1.4576 -1.7248 19 6 7.9893 2.8082 -1.9859 20 6 6.7642 3.4593 -1.9846 21 6 5.6056 2.7591 -1.7289 22 6 5.6685 1.3921 -1.4716 23 6 3.3079 -0.5888 1.1372 24 6 2.6159 -1.2963 2.1217 25 6 3.3219 -1.8417 3.1781 26 6 4.6986 -1.6630 3.2188 27 6 5.3199 -0.9464 2.2136 28 7 4.6256 -0.4409 1.2139 29 1 2.7285 1.1243 -1.8050 30 1 4.8996 -1.7796 -0.7904 31 1 7.2587 -2.6134 -1.2393 32 1 8.4523 -1.4648 -1.8906 33 1 10.4945 -3.9543 -0.1029 34 1 9.0253 0.9600 -1.7309 35 1 8.8917 3.3666 -2.1868 36 1 6.7188 4.5197 -2.1846 37 1 4.6529 3.2680 -1.7288 38 1 1.5446 -1.4166 2.0587 39 1 2.8140 -2.3946 3.9545 40 1 5.2779 -2.0765 4.0311 41 1 6.3898 -0.8023 2.2455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096662838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:50 Heat of formation + Delta-G solvation = 150.962888 kcal Electronic energy + Delta-G solvation = -26925.851507 eV Core-core repulsion = 23351.020464 eV Total energy + Delta-G solvation = -3574.831042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.122 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85540 -39.73607 -36.81279 -36.50024 -34.77979 -33.23523 -32.06435 -31.64518 -29.89470 -29.61626 -28.23889 -26.87917 -24.41613 -23.15545 -23.06427 -22.34330 -21.67279 -20.51588 -18.85459 -17.96750 -16.84434 -16.33738 -15.96141 -15.88447 -15.64365 -15.04021 -14.78522 -14.59098 -14.01744 -13.91583 -13.78994 -13.33345 -13.25016 -13.18388 -13.09371 -12.80111 -12.43160 -12.32789 -12.23569 -12.00666 -11.67809 -11.46715 -11.30379 -11.22281 -10.91324 -10.89478 -10.52084 -10.25667 -10.03729 -9.79440 -9.45161 -9.21877 -8.79370 -8.74531 -8.17764 -7.50317 -6.62602 -6.33458 -4.45982 0.61018 1.47271 1.72146 1.84219 2.25670 2.78570 3.12568 3.18875 3.19241 3.25999 3.64494 3.73586 4.03613 4.18636 4.27180 4.49402 4.70726 4.92881 4.97095 5.13567 5.21443 5.30068 5.35709 5.38415 5.42563 5.49767 5.65764 5.82171 5.89251 5.97683 6.07943 6.14530 6.20798 6.32646 6.42020 6.45812 6.51891 6.57834 6.75515 6.87268 6.97296 7.00101 7.09487 7.31100 7.41866 7.55765 7.68384 7.75258 7.95245 8.00930 8.31605 8.61056 9.21561 10.69991 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.005655 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.899896 B = 4950.261938 C = 7138.564879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.275 3.725 3 C -0.115 4.115 4 C 0.116 3.884 5 C -0.226 4.226 6 C 0.190 3.810 7 N -0.432 5.432 8 C 0.232 3.768 9 C -0.537 4.537 10 H 0.068 0.932 11 C 0.069 3.931 12 N -0.889 5.889 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.096 3.904 18 C -0.098 4.098 19 C -0.128 4.128 20 C -0.144 4.144 21 C -0.096 4.096 22 C -0.064 4.064 23 C 0.190 3.810 24 C -0.179 4.179 25 C -0.073 4.073 26 C -0.184 4.184 27 C 0.121 3.879 28 N -0.450 5.450 29 H 0.124 0.876 30 H 0.156 0.844 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.269 0.731 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 5.757 0.800 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.038 4.038 3 C -0.120 4.120 4 C 0.091 3.909 5 C -0.233 4.233 6 C 0.050 3.950 7 N -0.106 5.106 8 C 0.113 3.887 9 C -0.575 4.575 10 H 0.086 0.914 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.009 4.009 18 C -0.118 4.118 19 C -0.147 4.147 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.068 4.068 23 C 0.054 3.946 24 C -0.200 4.200 25 C -0.098 4.098 26 C -0.204 4.204 27 C -0.037 4.037 28 N -0.158 5.158 29 H 0.142 0.858 30 H 0.174 0.826 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.994 5.780 0.157 9.866 hybrid contribution 0.648 -0.763 1.853 2.106 sum -7.346 5.016 2.010 9.120 Atomic orbital electron populations 1.81212 1.12034 1.10836 1.08601 1.25530 0.92376 0.92790 0.93100 1.16439 0.83067 1.15265 0.97248 1.20939 0.92205 0.87175 0.90565 1.17538 0.91337 0.92937 1.21511 1.22137 0.82727 0.98354 0.91757 1.44637 1.06686 1.07381 1.51866 1.19802 0.84961 0.84864 0.99024 1.21234 1.18829 1.18194 0.99260 0.91386 1.24916 0.96281 0.94714 0.97635 1.69902 1.28985 1.18928 1.34858 0.86518 0.79294 0.78123 0.83438 1.19816 1.21048 1.19848 1.18151 0.94802 0.84147 1.03842 1.20205 0.96381 0.93640 1.01599 1.20632 0.97389 0.93644 1.03078 1.20723 0.92490 0.98971 1.04129 1.20245 0.97804 0.92044 1.01337 1.18820 0.91775 0.92880 1.03363 1.19290 0.89784 0.93326 0.92214 1.21956 1.00648 1.00796 0.96558 1.21386 0.94220 0.97055 0.97184 1.22176 0.95174 1.02013 1.01043 1.23043 1.00786 0.91708 0.88134 1.68408 1.05915 1.18662 1.22856 0.85811 0.82649 0.93475 0.93707 0.92171 0.86045 0.86678 0.86998 0.87028 0.85952 0.85453 0.85288 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.93 18.54 41.84 0.78 -6.15 16 2 C 0.28 3.84 14.03 -22.47 -0.32 3.52 16 3 C -0.11 -1.56 5.86 -104.23 -0.61 -2.17 16 4 C 0.12 1.53 9.68 -38.43 -0.37 1.16 16 5 C -0.23 -3.56 4.54 -104.87 -0.48 -4.03 16 6 C 0.19 3.24 7.97 -16.03 -0.13 3.11 16 7 N -0.43 -8.29 2.74 -115.02 -0.32 -8.61 16 8 C 0.23 5.09 5.72 -5.19 -0.03 5.06 16 9 C -0.54 -12.74 9.36 -34.44 -0.32 -13.07 16 10 H 0.07 1.63 6.71 -52.49 -0.35 1.28 16 11 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -23.13 13.29 55.43 0.74 -22.39 16 13 Si 0.90 19.20 29.54 -169.99 -5.02 14.18 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 15 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 C 0.10 1.79 6.76 -83.94 -0.57 1.23 16 18 C -0.10 -1.74 9.96 -39.40 -0.39 -2.14 16 19 C -0.13 -1.93 10.01 -39.56 -0.40 -2.33 16 20 C -0.14 -2.04 10.03 -39.57 -0.40 -2.44 16 21 C -0.10 -1.43 10.09 -39.38 -0.40 -1.82 16 22 C -0.06 -1.09 6.34 -104.91 -0.66 -1.75 16 23 C 0.19 2.81 6.23 -82.97 -0.52 2.30 16 24 C -0.18 -2.40 9.47 -39.06 -0.37 -2.77 16 25 C -0.07 -0.90 10.16 -39.33 -0.40 -1.30 16 26 C -0.18 -2.50 10.11 -39.36 -0.40 -2.90 16 27 C 0.12 1.94 11.17 -17.58 -0.20 1.74 16 28 N -0.45 -7.33 5.35 -9.81 -0.05 -7.38 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.16 2.53 7.77 -52.49 -0.41 2.12 16 31 H 0.05 1.08 8.09 -51.92 -0.42 0.66 16 32 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 34 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.52 7.18 -52.49 -0.38 1.15 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.16 2.75 6.96 -52.48 -0.37 2.39 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -26.41 363.27 -9.89 -36.30 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.44 Total: 5.60 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -7.05 Total: -17.03 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 1.14 Total: -44.53 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.41 -9.89 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096662838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.263 kcal (2) G-P(sol) polarization free energy of solvation -26.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds