Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35944 * 116.99927 * 2 1 4 4 C 1.37956 * 120.05345 * 359.71660 * 3 2 1 5 5 C 1.40366 * 119.68693 * 179.77879 * 4 3 2 6 6 C 1.46206 * 120.10813 * 180.23483 * 5 4 3 7 7 C 1.38347 * 119.99786 * 46.56836 * 6 5 4 8 8 C 1.43205 * 119.99651 * 190.31977 * 7 6 5 9 9 N 7.59144 * 67.04009 * 4.92444 * 2 1 3 10 10 C 1.46207 * 120.00414 * 10.31956 * 7 6 5 11 11 O 1.21392 * 119.99783 * 6.93112 * 10 7 6 12 12 C 1.50696 * 120.00243 * 186.93002 * 10 7 6 13 13 C 1.53004 * 109.47290 * 180.02562 * 12 10 7 14 14 C 1.53005 * 109.47138 * 299.99935 * 12 10 7 15 15 C 1.53001 * 109.47373 * 60.00038 * 12 10 7 16 16 C 1.40383 * 119.78566 * 0.52084 * 5 4 3 17 17 C 1.36492 * 120.09763 * 359.71192 * 16 5 4 18 18 C 1.39182 * 120.31800 * 0.03948 * 17 16 5 19 19 O 1.35506 * 119.89395 * 179.97438 * 18 17 16 20 20 C 1.34706 * 116.99931 * 354.22378 * 19 18 17 21 21 H 1.08003 * 120.00546 * 5.06607 * 20 19 18 22 22 C 1.38804 * 119.99809 * 185.05974 * 20 19 18 23 23 N 1.31457 * 120.00105 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99847 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46865 * 60.00699 * 24 22 20 26 26 H 1.48501 * 109.47199 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47231 * 300.00689 * 24 22 20 28 28 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46653 * 60.00392 * 1 2 3 30 30 H 1.08997 * 109.47552 * 300.00887 * 1 2 3 31 31 H 1.07997 * 120.15182 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.99868 * 226.57607 * 6 5 4 33 33 H 1.09001 * 109.47012 * 59.99630 * 13 12 10 34 34 H 1.08998 * 109.47663 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47084 * 300.00189 * 13 12 10 36 36 H 1.08994 * 109.46902 * 60.00141 * 14 12 10 37 37 H 1.08998 * 109.47233 * 180.02562 * 14 12 10 38 38 H 1.09001 * 109.46980 * 300.00257 * 14 12 10 39 39 H 1.08999 * 109.46831 * 59.99915 * 15 12 10 40 40 H 1.08995 * 109.46971 * 180.02562 * 15 12 10 41 41 H 1.09000 * 109.46502 * 299.99895 * 15 12 10 42 42 H 1.08005 * 119.95147 * 179.72571 * 16 5 4 43 43 H 1.07999 * 119.84077 * 180.02562 * 17 16 5 44 44 H 0.96996 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2959 2.3690 -0.0059 5 6 1.9411 3.6155 -0.0012 6 6 1.1550 4.8483 -0.0022 7 6 0.0851 4.9870 0.8639 8 6 -0.8169 6.0896 0.7167 9 7 -1.5323 6.9642 0.6000 10 6 -0.1249 4.0081 1.9294 11 8 0.7056 3.1467 2.1344 12 6 -1.3720 4.0684 2.7731 13 6 -1.3437 2.9405 3.8066 14 6 -1.4364 5.4172 3.4925 15 6 -2.6021 3.9090 1.8772 16 6 3.3437 3.6749 -0.0015 17 6 4.0774 2.5239 -0.0005 18 6 3.4420 1.2856 0.0000 19 8 4.1789 0.1484 0.0005 20 6 5.5136 0.2846 -0.1204 21 1 5.9575 1.2691 -0.1297 22 6 6.3186 -0.8406 -0.2330 23 7 5.7784 -2.0390 -0.2221 24 14 8.1694 -0.6518 -0.4014 25 1 8.7052 0.0549 0.7898 26 1 8.7965 -1.9939 -0.5049 27 1 8.4777 0.1337 -1.6233 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5139 0.8899 31 1 0.2172 2.3163 -0.0101 32 1 1.4094 5.6504 -0.6791 33 1 -0.4674 3.0545 4.4448 34 1 -2.2455 2.9844 4.4172 35 1 -1.2976 1.9795 3.2945 36 1 -1.4565 6.2209 2.7565 37 1 -2.3383 5.4606 4.1031 38 1 -0.5601 5.5307 4.1307 39 1 -2.5562 2.9481 1.3647 40 1 -3.5041 3.9530 2.4874 41 1 -2.6220 4.7128 1.1413 42 1 3.8429 4.6326 -0.0023 43 1 5.1562 2.5744 -0.0004 44 1 6.3409 -2.8252 -0.3012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096663120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -17.960771 kcal Electronic energy + Delta-G solvation = -28280.360481 eV Core-core repulsion = 24358.602688 eV Total energy + Delta-G solvation = -3921.757793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.37095 -39.47043 -37.68980 -36.80401 -36.58776 -35.34211 -33.17300 -32.40291 -29.65878 -29.10584 -27.49404 -27.35804 -26.79490 -25.74547 -24.52966 -22.64667 -21.69515 -20.48919 -19.63688 -18.25911 -17.66795 -16.97950 -16.30036 -15.68236 -15.36443 -15.17454 -14.95732 -14.80412 -14.63433 -14.12997 -13.99675 -13.91632 -13.62750 -13.52977 -13.51408 -13.03097 -12.78569 -12.69657 -12.46557 -12.31309 -12.26566 -12.05624 -11.87585 -11.73055 -11.61825 -11.53260 -11.22948 -11.06517 -11.03041 -10.84788 -10.72985 -10.59935 -10.52922 -9.66183 -9.37271 -9.30410 -8.88682 -7.78813 -6.95312 -6.67790 -4.15503 0.40527 2.18453 2.23213 2.44136 2.69802 3.02804 3.04747 3.07262 3.56428 3.79551 3.95370 3.99127 4.10617 4.39809 4.63949 4.79698 4.87102 4.89456 4.97579 5.10603 5.34307 5.42094 5.46724 5.48292 5.53844 5.57593 5.59952 5.61456 5.70763 5.76738 5.78265 5.83937 5.90977 5.93915 6.09067 6.10251 6.20751 6.24466 6.28059 6.46788 6.79296 6.94164 7.05138 7.17508 7.47817 7.49928 7.73716 7.78616 8.11671 8.74926 9.45052 10.47482 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.003252 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.428417 B = 8608.299027 C = 9208.463115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.050 3.950 4 C -0.087 4.087 5 C -0.187 4.187 6 C 0.116 3.884 7 C -0.218 4.218 8 C 0.277 3.723 9 N -0.447 5.447 10 C 0.405 3.595 11 O -0.416 6.416 12 C -0.110 4.110 13 C -0.131 4.131 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.040 4.040 17 C -0.233 4.233 18 C 0.159 3.841 19 O -0.141 6.141 20 C -0.388 4.388 21 H 0.099 0.901 22 C 0.042 3.958 23 N -0.839 5.839 24 Si 0.946 3.054 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.114 0.886 43 H 0.137 0.863 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 9.762 2.529 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.217 6.217 3 C 0.005 3.995 4 C -0.106 4.106 5 C -0.189 4.189 6 C 0.094 3.906 7 C -0.224 4.224 8 C -0.035 4.035 9 N -0.124 5.124 10 C 0.280 3.720 11 O -0.289 6.289 12 C -0.111 4.111 13 C -0.188 4.188 14 C -0.202 4.202 15 C -0.196 4.196 16 C -0.059 4.059 17 C -0.252 4.252 18 C 0.101 3.899 19 O -0.040 6.040 20 C -0.463 4.463 21 H 0.117 0.883 22 C -0.166 4.166 23 N -0.471 5.471 24 Si 0.769 3.231 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.191 1.191 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.909 9.870 2.487 14.920 hybrid contribution 0.793 0.113 0.027 0.801 sum -10.116 9.983 2.513 14.434 Atomic orbital electron populations 1.22883 0.80360 1.02905 1.00255 1.86215 1.19418 1.26227 1.89840 1.17907 0.89223 0.84541 1.07821 1.20599 0.97807 0.90515 1.01722 1.17858 0.92802 0.90752 1.17482 1.23146 0.86342 0.93986 0.87176 1.18524 1.01018 0.97750 1.05078 1.25423 0.92931 0.92487 0.92695 1.81243 1.10546 1.11185 1.09474 1.21594 0.86546 0.81874 0.81996 1.90757 1.42409 1.31373 1.64350 1.21084 0.95270 0.97967 0.96744 1.21690 1.01913 0.97304 0.97877 1.21952 1.02532 0.95153 1.00561 1.21839 0.96142 1.02326 0.99303 1.20503 0.91698 0.97521 0.96139 1.20476 1.00664 0.90775 1.13303 1.18955 0.88222 0.87457 0.95299 1.83932 1.19790 1.26346 1.73964 1.21561 0.78416 0.95171 1.51174 0.88333 1.25461 1.01046 0.94095 0.95980 1.70010 1.36992 0.97931 1.42117 0.85700 0.79552 0.78298 0.79519 1.19127 1.20033 1.19129 0.89078 0.93749 0.93446 0.86722 0.85042 0.91894 0.92385 0.91929 0.91923 0.91718 0.92054 0.92043 0.91633 0.92253 0.86800 0.84588 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.30 -6.48 10.28 -34.10 -0.35 -6.83 16 3 C 0.05 1.06 6.70 -39.11 -0.26 0.80 16 4 C -0.09 -1.53 5.70 -38.88 -0.22 -1.75 16 5 C -0.19 -3.00 4.48 -105.09 -0.47 -3.47 16 6 C 0.12 1.45 9.52 -36.34 -0.35 1.11 16 7 C -0.22 -2.75 5.57 -104.73 -0.58 -3.34 16 8 C 0.28 3.47 10.29 -22.47 -0.23 3.24 16 9 N -0.45 -6.15 17.80 41.84 0.74 -5.40 16 10 C 0.40 5.48 5.11 -31.11 -0.16 5.32 16 11 O -0.42 -6.96 12.03 5.46 0.07 -6.90 16 12 C -0.11 -1.23 0.75 -155.66 -0.12 -1.35 16 13 C -0.13 -1.43 7.76 37.16 0.29 -1.14 16 14 C -0.14 -1.50 8.23 37.16 0.31 -1.20 16 15 C -0.14 -1.39 8.26 37.16 0.31 -1.08 16 16 C -0.04 -0.66 9.74 -39.40 -0.38 -1.05 16 17 C -0.23 -4.67 9.09 -39.86 -0.36 -5.04 16 18 C 0.16 3.72 6.68 -38.65 -0.26 3.46 16 19 O -0.14 -3.89 9.52 -13.39 -0.13 -4.02 16 20 C -0.39 -10.21 9.48 30.94 0.29 -9.91 16 21 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 22 C 0.04 1.09 5.50 -17.50 -0.10 0.99 16 23 N -0.84 -23.43 13.67 55.49 0.76 -22.67 16 24 Si 0.95 19.11 29.55 -169.99 -5.02 14.09 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 30 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.11 1.79 5.53 -52.49 -0.29 1.50 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.64 5.79 -51.93 -0.30 0.34 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.14 2.65 5.61 -52.49 -0.29 2.36 16 44 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -30.61 368.55 -5.24 -35.86 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.56 Total: 3.24 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.30 Total: -12.92 kcal Atomic # 7 Polarization: -29.58 SS G_CDS: 1.50 Total: -28.08 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.41 Total: -17.74 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.61 -5.24 -35.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096663120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.898 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds