Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 C 1.50701 * 109.47340 * 120.00469 * 2 1 3 5 5 H 1.07997 * 120.00285 * 119.99546 * 4 2 1 6 6 C 1.37878 * 119.99560 * 299.99669 * 4 2 1 7 7 N 1.31515 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99834 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47353 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47554 * 120.00140 * 8 6 4 11 11 H 1.48505 * 109.47167 * 239.99922 * 8 6 4 12 12 N 1.46507 * 109.46938 * 240.00046 * 2 1 3 13 13 C 1.46503 * 119.99921 * 300.00180 * 12 2 1 14 14 C 1.34771 * 119.99882 * 119.99689 * 12 2 1 15 15 O 1.21580 * 120.00262 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00098 * 180.02562 * 14 12 2 17 17 C 1.39382 * 120.00277 * 174.91938 * 16 14 12 18 18 C 1.38924 * 119.66612 * 185.15687 * 17 16 14 19 19 C 1.38510 * 119.23154 * 179.97438 * 18 17 16 20 20 C 1.38599 * 118.55552 * 0.02562 * 19 18 17 21 21 C 1.38773 * 119.25921 * 359.97438 * 20 19 18 22 22 O 1.35677 * 119.63879 * 180.02562 * 21 20 19 23 23 C 1.42897 * 116.99650 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47035 * 179.97438 * 23 22 21 25 25 F 1.39898 * 109.46943 * 300.00441 * 24 23 22 26 26 F 1.39902 * 109.47093 * 59.99747 * 24 23 22 27 27 N 1.32325 * 120.71757 * 359.72313 * 21 20 19 28 28 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47052 * 59.99465 * 1 2 3 30 30 H 1.08997 * 109.46648 * 299.99782 * 1 2 3 31 31 H 0.97004 * 119.99867 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47278 * 89.99998 * 13 12 2 33 33 H 1.09000 * 109.46749 * 209.99977 * 13 12 2 34 34 H 1.08995 * 109.47084 * 329.99916 * 13 12 2 35 35 H 0.97003 * 119.99905 * 354.92019 * 16 14 12 36 36 H 1.08004 * 120.38458 * 359.97438 * 18 17 16 37 37 H 1.07993 * 120.72079 * 180.02562 * 19 18 17 38 38 H 1.07990 * 120.36719 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47170 * 299.99832 * 23 22 21 40 40 H 1.08999 * 109.47551 * 60.00017 * 23 22 21 41 41 H 1.08998 * 109.47075 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1196 4.0078 9 1 3.1475 -2.2864 3.6036 10 1 3.1474 -0.1860 4.8160 11 1 1.1679 -1.5867 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0872 1.1282 -1.8908 16 7 3.2419 -0.6708 -3.1841 17 6 3.9536 0.0335 -4.1537 18 6 4.3198 -0.6008 -5.3342 19 6 5.0265 0.1078 -6.2918 20 6 5.3448 1.4321 -6.0352 21 6 4.9483 2.0047 -4.8349 22 8 5.2554 3.3007 -4.5760 23 6 4.8191 3.8329 -3.3236 24 6 5.2548 5.2954 -3.2115 25 9 6.6493 5.3739 -3.2913 26 9 4.6858 6.0328 -4.2553 27 7 4.2688 1.3023 -3.9428 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 0.5138 0.8900 31 1 0.7089 1.1612 3.4844 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9865 34 1 1.5294 -2.5969 -0.4709 35 1 3.0696 -1.6181 -3.3016 36 1 4.0565 -1.6345 -5.5033 37 1 5.3229 -0.3614 -7.2182 38 1 5.8953 2.0118 -6.7612 39 1 3.7327 3.7713 -3.2613 40 1 5.2628 3.2587 -2.5104 41 1 4.9217 5.7015 -2.2564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097143272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = -105.264400 kcal Electronic energy + Delta-G solvation = -28444.857338 eV Core-core repulsion = 23997.376997 eV Total energy + Delta-G solvation = -4447.480341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.95155 -46.97820 -40.85210 -39.49577 -37.90125 -35.55676 -34.40645 -32.86593 -32.12909 -30.81936 -29.55902 -28.53429 -26.22789 -25.26799 -24.23179 -23.25610 -22.62692 -21.23837 -19.36946 -18.95711 -17.57781 -17.50915 -17.26841 -16.87672 -16.44091 -16.10954 -15.98407 -15.83825 -15.21846 -14.98147 -14.95600 -14.15096 -13.91053 -13.56668 -13.51551 -13.34091 -13.31390 -13.12905 -12.62896 -12.56314 -12.37160 -12.14039 -11.73512 -11.58470 -11.38296 -11.10059 -11.04572 -10.88780 -10.72897 -10.37885 -10.27193 -10.21772 -9.92088 -9.44855 -9.22222 -8.88452 -8.47199 -8.01242 -7.59878 -6.12145 -4.20020 1.24034 1.36060 2.76103 2.92122 3.22515 3.31057 3.33615 3.62101 3.76090 4.10866 4.15144 4.16247 4.36533 4.53370 4.61543 4.77833 4.98746 5.04077 5.19461 5.22707 5.36794 5.50156 5.52156 5.60973 5.81937 5.89864 6.15277 6.18072 6.23588 6.58273 6.72915 6.74785 6.89016 7.04236 7.24984 7.40218 7.59260 7.68849 7.95761 8.09615 8.18360 8.58700 8.81490 9.19192 9.47322 10.93094 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003612 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.565874 B = 7749.506914 C = 9420.208300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.274 3.726 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.605 5.605 13 C 0.084 3.916 14 C 0.688 3.312 15 O -0.538 6.538 16 N -0.674 5.674 17 C 0.433 3.567 18 C -0.257 4.257 19 C -0.013 4.013 20 C -0.234 4.234 21 C 0.353 3.647 22 O -0.299 6.299 23 C 0.023 3.977 24 C 0.270 3.730 25 F -0.202 7.202 26 F -0.202 7.202 27 N -0.527 5.527 28 H 0.029 0.971 29 H 0.011 0.989 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -1.310 -15.466 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.174 3.826 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.341 5.341 13 C -0.061 4.061 14 C 0.389 3.611 15 O -0.410 6.410 16 N -0.324 5.324 17 C 0.199 3.801 18 C -0.281 4.281 19 C -0.038 4.038 20 C -0.256 4.256 21 C 0.173 3.827 22 O -0.205 6.205 23 C -0.053 4.053 24 C 0.216 3.784 25 F -0.184 7.184 26 F -0.184 7.184 27 N -0.257 5.257 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.536 0.275 -14.411 15.440 hybrid contribution 0.320 -1.505 0.270 1.563 sum 5.857 -1.230 -14.141 15.355 Atomic orbital electron populations 1.22100 0.98177 0.99394 1.00814 1.18888 0.90639 0.94286 0.78822 0.91755 1.21362 1.31789 1.13075 0.90281 0.92231 1.24878 0.94916 0.94982 0.98938 1.69887 1.36320 1.22593 1.23694 0.86441 0.78592 0.79582 0.82761 1.19861 1.20905 1.20929 1.47677 1.51007 1.11511 1.23886 1.21554 0.98221 0.83591 1.02704 1.16074 0.80134 0.85373 0.79564 1.90925 1.60278 1.14681 1.75106 1.43257 1.55904 1.12828 1.20366 1.17765 0.88479 0.87225 0.86598 1.21229 1.09594 1.02267 0.95011 1.21046 0.92557 0.92333 0.97897 1.20843 1.10338 0.96618 0.97792 1.19537 0.89555 0.84078 0.89538 1.86228 1.73994 1.22428 1.37896 1.23816 1.03444 0.91377 0.86673 1.22224 0.74915 0.90676 0.90578 1.92997 1.31122 1.97059 1.97173 1.92997 1.84408 1.79012 1.61944 1.67204 1.18403 1.07772 1.32273 0.95188 0.97026 0.88753 0.92705 0.93780 0.93708 0.89565 0.75100 0.84644 0.84004 0.84402 0.87815 0.87890 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.76 2.64 -69.08 -0.18 6.58 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -13.77 7.99 -34.44 -0.28 -14.04 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.43 11.32 55.43 0.63 -23.81 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.60 -12.41 2.75 -181.00 -0.50 -12.90 16 13 C 0.08 1.29 9.24 59.85 0.55 1.85 16 14 C 0.69 14.13 8.24 -86.93 -0.72 13.41 16 15 O -0.54 -12.95 13.93 5.30 0.07 -12.88 16 16 N -0.67 -10.56 5.27 -15.83 -0.08 -10.64 16 17 C 0.43 6.71 7.42 -154.71 -1.15 5.57 16 18 C -0.26 -2.90 9.93 -39.23 -0.39 -3.29 16 19 C -0.01 -0.13 10.16 -39.35 -0.40 -0.53 16 20 C -0.23 -2.86 10.04 -39.25 -0.39 -3.25 16 21 C 0.35 5.54 7.48 -17.14 -0.13 5.41 16 22 O -0.30 -4.67 10.00 -18.73 -0.19 -4.86 16 23 C 0.02 0.34 5.53 37.16 0.21 0.55 16 24 C 0.27 3.25 5.63 37.16 0.21 3.46 16 25 F -0.20 -2.76 17.28 2.25 0.04 -2.72 16 26 F -0.20 -2.75 17.28 2.25 0.04 -2.71 16 27 N -0.53 -9.35 6.73 -12.44 -0.08 -9.43 16 28 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.53 6.29 -51.93 -0.33 0.21 16 34 H 0.09 1.44 7.02 -51.93 -0.36 1.07 16 35 H 0.41 4.85 6.39 -40.82 -0.26 4.59 16 36 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 40 H 0.10 1.60 8.11 -51.93 -0.42 1.18 16 41 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -32.99 354.77 -7.10 -40.09 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.92 Total: 4.68 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -2.43 Total: 14.29 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.04 Total: -56.78 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.11 Total: -17.73 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.08 Total: -5.43 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.99 -7.10 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097143272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.175 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds