Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 C 1.50703 * 109.46810 * 240.00141 * 2 1 3 5 5 H 1.07996 * 120.00132 * 265.23915 * 4 2 1 6 6 C 1.37881 * 120.00025 * 85.23914 * 4 2 1 7 7 N 1.31511 * 119.99782 * 185.04705 * 6 4 2 8 8 Si 1.86800 * 119.99946 * 5.04961 * 6 4 2 9 9 H 1.48503 * 109.46767 * 94.74752 * 8 6 4 10 10 H 1.48494 * 109.47244 * 214.74662 * 8 6 4 11 11 H 1.48504 * 109.47203 * 334.74965 * 8 6 4 12 12 N 1.46495 * 109.46892 * 120.00307 * 2 1 3 13 13 C 1.46498 * 120.00100 * 59.99920 * 12 2 1 14 14 C 1.34774 * 119.99720 * 239.99238 * 12 2 1 15 15 O 1.21581 * 120.00268 * 0.02562 * 14 12 2 16 16 N 1.34780 * 119.99988 * 180.02562 * 14 12 2 17 17 C 1.39384 * 120.00131 * 185.15636 * 16 14 12 18 18 C 1.38928 * 119.66673 * 174.71335 * 17 16 14 19 19 C 1.38505 * 119.23008 * 180.02562 * 18 17 16 20 20 C 1.38597 * 118.55467 * 359.97438 * 19 18 17 21 21 C 1.38766 * 119.26626 * 359.97438 * 20 19 18 22 22 O 1.35671 * 119.64468 * 179.97438 * 21 20 19 23 23 C 1.42904 * 117.00326 * 180.02562 * 22 21 20 24 24 C 1.52995 * 109.47428 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.46711 * 299.99909 * 24 23 22 26 26 F 1.39899 * 109.47271 * 59.99439 * 24 23 22 27 27 N 1.32330 * 120.71324 * 0.26266 * 21 20 19 28 28 H 1.09002 * 109.47416 * 64.87751 * 1 2 3 29 29 H 1.08998 * 109.47220 * 184.88163 * 1 2 3 30 30 H 1.09002 * 109.46720 * 304.88344 * 1 2 3 31 31 H 0.97002 * 119.99376 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47180 * 269.99133 * 13 12 2 33 33 H 1.08997 * 109.47410 * 29.99982 * 13 12 2 34 34 H 1.09005 * 109.47084 * 149.99741 * 13 12 2 35 35 H 0.96995 * 119.99799 * 5.15420 * 16 14 12 36 36 H 1.08005 * 120.37828 * 0.03674 * 18 17 16 37 37 H 1.07994 * 120.71725 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.36361 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46779 * 300.00111 * 23 22 21 40 40 H 1.08997 * 109.46719 * 59.99797 * 23 22 21 41 41 H 1.08996 * 109.47223 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2854 -1.7592 -1.1830 6 6 2.1686 -0.0214 -2.4170 7 7 2.5113 -0.6615 -3.5135 8 14 1.8666 1.8214 -2.4669 9 1 3.1568 2.5389 -2.3062 10 1 1.2554 2.1877 -3.7697 11 1 0.9475 2.2024 -1.3644 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0867 1.1284 1.8910 16 7 3.2429 -0.6713 3.1834 17 6 3.9535 0.0333 4.1537 18 6 4.3181 -0.6008 5.3349 19 6 5.0236 0.1080 6.2931 20 6 5.3424 1.4322 6.0365 21 6 4.9483 2.0043 4.8353 22 8 5.2558 3.3001 4.5764 23 6 4.8221 3.8319 3.3229 24 6 5.2578 5.2942 3.2111 25 9 4.6864 6.0320 4.2534 26 9 6.6522 5.3730 3.2938 27 7 4.2710 1.3013 3.9419 28 1 -0.3634 0.4363 -0.9305 29 1 -0.3633 -1.0239 0.0874 30 1 -0.3633 0.5878 0.8430 31 1 2.6069 -0.1767 -4.3482 32 1 0.7375 -2.1444 1.9993 33 1 1.5294 -2.5969 0.4707 34 1 2.4628 -2.5820 1.9862 35 1 3.0720 -1.6189 3.3000 36 1 4.0547 -1.6346 5.5037 37 1 5.3189 -0.3611 7.2200 38 1 5.8920 2.0121 6.7632 39 1 5.2677 3.2573 2.5108 40 1 3.7358 3.7701 3.2584 41 1 4.9275 5.6996 2.2548 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097143273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = -103.112355 kcal Electronic energy + Delta-G solvation = -28619.107844 eV Core-core repulsion = 24171.720823 eV Total energy + Delta-G solvation = -4447.387021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.00382 -47.03022 -40.91254 -39.59643 -37.97370 -35.69708 -34.49822 -32.74266 -32.17565 -30.99047 -30.17698 -28.73679 -26.35797 -25.27468 -24.29254 -23.31791 -22.68390 -21.24088 -19.40060 -18.94373 -17.73461 -17.56297 -17.43303 -17.02422 -16.64604 -16.27150 -16.02393 -15.89809 -15.29790 -15.16673 -14.94007 -14.11522 -13.94531 -13.61934 -13.54537 -13.39136 -13.35023 -13.24313 -12.74520 -12.50405 -12.42548 -12.29875 -12.19385 -11.94190 -11.51549 -11.37736 -11.14593 -11.10276 -10.74322 -10.53900 -10.37242 -10.02113 -9.79863 -9.50340 -9.35128 -8.96098 -8.64293 -8.07626 -7.69863 -6.20976 -4.22414 1.19415 1.31840 2.69648 2.84103 3.25543 3.33928 3.38964 3.54065 3.70336 4.03664 4.07579 4.09407 4.33408 4.47423 4.53142 4.72655 4.94134 4.99573 5.16553 5.18820 5.32486 5.43758 5.46885 5.54210 5.77106 5.81317 6.08091 6.13980 6.15819 6.25561 6.35842 6.51477 6.66982 6.69092 6.87603 7.11868 7.29556 7.41713 7.57717 7.92320 8.30955 8.47720 8.79852 9.07906 9.41326 10.91143 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010578 B = 0.004281 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.356898 B = 6539.501529 C = 8576.750270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.242 3.758 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.258 1.258 12 N -0.600 5.600 13 C 0.082 3.918 14 C 0.690 3.310 15 O -0.542 6.542 16 N -0.672 5.672 17 C 0.432 3.568 18 C -0.255 4.255 19 C -0.012 4.012 20 C -0.232 4.232 21 C 0.353 3.647 22 O -0.298 6.298 23 C 0.023 3.977 24 C 0.270 3.730 25 F -0.202 7.202 26 F -0.201 7.201 27 N -0.528 5.528 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.412 0.588 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 1.952 18.023 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.140 3.860 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.698 3.302 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.182 1.182 12 N -0.336 5.336 13 C -0.062 4.062 14 C 0.391 3.609 15 O -0.414 6.414 16 N -0.322 5.322 17 C 0.199 3.801 18 C -0.279 4.279 19 C -0.038 4.038 20 C -0.254 4.254 21 C 0.173 3.827 22 O -0.205 6.205 23 C -0.054 4.054 24 C 0.216 3.784 25 F -0.183 7.183 26 F -0.183 7.183 27 N -0.257 5.257 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.251 0.749 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.644 3.429 16.913 17.458 hybrid contribution -0.028 -0.149 0.380 0.409 sum 2.616 3.280 17.293 17.794 Atomic orbital electron populations 1.22285 0.98443 1.00265 0.99707 1.19236 0.90421 0.94722 0.81574 0.91752 1.21131 1.45139 0.98363 0.91999 0.90420 1.24890 0.93938 0.98252 0.95341 1.69889 1.47061 1.36249 0.99686 0.86940 0.79437 0.86144 0.77647 1.20054 1.21213 1.18245 1.47537 1.51156 1.11588 1.23320 1.21605 0.98388 0.83263 1.02966 1.16050 0.79992 0.85295 0.79533 1.90914 1.60421 1.14831 1.75260 1.43189 1.55906 1.12833 1.20265 1.17753 0.88553 0.87239 0.86584 1.21235 1.09472 1.02280 0.94927 1.21053 0.92504 0.92307 0.97937 1.20850 1.10228 0.96629 0.97741 1.19529 0.89622 0.84054 0.89539 1.86231 1.74090 1.22451 1.37716 1.23815 1.03389 0.91437 0.86736 1.22210 0.74964 0.90645 0.90582 1.92998 1.84311 1.78991 1.62033 1.93001 1.31057 1.97048 1.97159 1.67187 1.18450 1.07826 1.32273 0.92357 0.93316 0.95574 0.92400 0.93655 0.89324 0.93336 0.74941 0.84566 0.83941 0.84363 0.87882 0.87895 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.84 37.16 0.33 -2.70 16 2 C 0.24 5.59 2.17 -69.08 -0.15 5.44 16 3 H 0.06 1.65 4.47 -51.93 -0.23 1.41 16 4 C -0.53 -14.02 8.69 -34.44 -0.30 -14.32 16 5 H 0.08 2.19 6.89 -52.49 -0.36 1.83 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 8 Si 0.87 21.24 26.35 -169.99 -4.48 16.76 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.26 -6.03 5.98 56.52 0.34 -5.69 16 12 N -0.60 -11.86 2.75 -181.01 -0.50 -12.35 16 13 C 0.08 1.22 9.18 59.85 0.55 1.77 16 14 C 0.69 13.74 8.24 -86.92 -0.72 13.03 16 15 O -0.54 -12.62 13.93 5.29 0.07 -12.54 16 16 N -0.67 -10.24 5.27 -15.83 -0.08 -10.32 16 17 C 0.43 6.53 7.42 -154.71 -1.15 5.39 16 18 C -0.25 -2.79 9.93 -39.23 -0.39 -3.18 16 19 C -0.01 -0.12 10.16 -39.35 -0.40 -0.52 16 20 C -0.23 -2.78 10.04 -39.25 -0.39 -3.17 16 21 C 0.35 5.42 7.48 -17.14 -0.13 5.29 16 22 O -0.30 -4.58 10.00 -18.71 -0.19 -4.76 16 23 C 0.02 0.32 5.53 37.16 0.21 0.53 16 24 C 0.27 3.19 5.63 37.16 0.21 3.40 16 25 F -0.20 -2.68 17.28 2.25 0.04 -2.64 16 26 F -0.20 -2.72 17.28 2.25 0.04 -2.68 16 27 N -0.53 -9.16 6.73 -12.44 -0.08 -9.25 16 28 H 0.06 1.22 6.92 -51.93 -0.36 0.86 16 29 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.46 6.63 -51.93 -0.34 1.12 16 34 H 0.05 0.56 6.29 -51.93 -0.33 0.24 16 35 H 0.41 4.69 6.39 -40.82 -0.26 4.43 16 36 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.10 1.58 8.11 -51.93 -0.42 1.16 16 40 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 41 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -34.40 350.73 -6.40 -40.81 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.85 Total: 4.07 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -2.43 Total: 13.06 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.11 Total: -57.36 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.11 Total: -17.31 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.08 Total: -5.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.48 Total: 16.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.40 -6.40 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097143273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.307 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds