Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46731 * 2 1 4 4 C 1.50695 * 109.47379 * 120.00526 * 2 1 3 5 5 H 1.08001 * 119.99531 * 94.89767 * 4 2 1 6 6 C 1.37870 * 120.00266 * 274.89272 * 4 2 1 7 7 N 1.31517 * 120.00459 * 174.94789 * 6 4 2 8 8 Si 1.86805 * 120.00028 * 354.95076 * 6 4 2 9 9 H 1.48501 * 109.47313 * 275.02917 * 8 6 4 10 10 H 1.48505 * 109.46697 * 35.02641 * 8 6 4 11 11 H 1.48495 * 109.47318 * 155.02388 * 8 6 4 12 12 N 1.46505 * 109.47057 * 240.00964 * 2 1 3 13 13 C 1.34774 * 120.00037 * 84.99403 * 12 2 1 14 14 O 1.21366 * 120.00312 * 0.02562 * 13 12 2 15 15 C 1.49342 * 120.00049 * 179.97438 * 13 12 2 16 16 O 1.21387 * 119.99795 * 0.02562 * 15 13 12 17 17 N 1.34767 * 120.00304 * 180.02562 * 15 13 12 18 18 C 1.39743 * 120.00314 * 185.43081 * 17 15 13 19 19 C 1.38826 * 120.10179 * 34.67446 * 18 17 15 20 20 C 1.38136 * 119.98740 * 179.74519 * 19 18 17 21 21 C 1.38345 * 120.20105 * 0.53235 * 20 19 18 22 22 C 1.38183 * 120.21299 * 359.74626 * 21 20 19 23 23 C 1.38688 * 120.00901 * 359.97438 * 22 21 20 24 24 N 1.40266 * 120.10168 * 180.02562 * 23 22 21 25 25 C 1.36102 * 125.94135 * 4.96790 * 24 23 22 26 26 C 1.35387 * 106.04951 * 179.91244 * 25 24 23 27 27 N 1.33770 * 106.53378 * 0.35060 * 26 25 24 28 28 N 1.28597 * 109.06293 * 359.77478 * 27 26 25 29 29 H 1.08998 * 109.47652 * 54.98754 * 1 2 3 30 30 H 1.08999 * 109.46600 * 174.99062 * 1 2 3 31 31 H 1.08996 * 109.47009 * 294.98496 * 1 2 3 32 32 H 0.96998 * 120.00289 * 179.97438 * 7 6 4 33 33 H 0.96997 * 119.99664 * 264.99927 * 12 2 1 34 34 H 0.97002 * 120.00023 * 5.43032 * 17 15 13 35 35 H 1.07996 * 120.01079 * 359.97438 * 19 18 17 36 36 H 1.07995 * 119.90290 * 180.27835 * 20 19 18 37 37 H 1.07993 * 119.89704 * 179.76121 * 21 20 19 38 38 H 1.07992 * 119.99573 * 180.02562 * 22 21 20 39 39 H 1.07992 * 126.97346 * 0.02562 * 25 24 23 40 40 H 1.07995 * 126.73574 * 180.12554 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.2877 -1.7588 1.1821 6 6 2.1662 -0.0223 2.4175 7 7 2.5090 -0.6627 3.5139 8 14 1.8606 1.8198 2.4688 9 1 3.0996 2.5383 2.0767 10 1 0.7676 2.1667 1.5252 11 1 1.4714 2.2189 3.8452 12 7 2.0183 -0.6904 -1.1963 13 6 2.1469 -0.0179 -2.3572 14 8 1.8586 1.1597 -2.4115 15 6 2.6453 -0.7216 -3.5765 16 8 2.9340 -1.8994 -3.5222 17 7 2.7744 -0.0491 -4.7373 18 6 3.1313 -0.7306 -5.9038 19 6 2.6854 -2.0281 -6.1163 20 6 3.0354 -2.6977 -7.2727 21 6 3.8389 -2.0834 -8.2166 22 6 4.2921 -0.7943 -8.0109 23 6 3.9414 -0.1117 -6.8557 24 7 4.3999 1.1970 -6.6453 25 6 5.1124 1.9460 -7.5306 26 6 5.3381 3.1331 -6.9202 27 7 4.7713 3.0533 -5.7111 28 7 4.2249 1.8967 -5.5789 29 1 -0.3634 0.5896 -0.8416 30 1 -0.3632 -1.0238 -0.0897 31 1 -0.3633 0.4341 0.9315 32 1 2.6035 -0.1785 4.3490 33 1 2.2490 -1.6316 -1.1529 34 1 2.6195 0.9082 -4.7630 35 1 2.0621 -2.5125 -5.3793 36 1 2.6841 -3.7054 -7.4386 37 1 4.1126 -2.6129 -9.1171 38 1 4.9188 -0.3180 -8.7503 39 1 5.4311 1.6534 -8.5201 40 1 5.8742 3.9774 -7.3277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122822758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = 82.426976 kcal Electronic energy + Delta-G solvation = -27340.454383 eV Core-core repulsion = 23351.802137 eV Total energy + Delta-G solvation = -3988.652246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.75448 -40.99524 -39.48949 -38.08709 -35.59868 -35.02322 -34.62585 -32.39021 -31.51731 -30.64445 -30.04377 -29.75477 -25.50458 -25.19910 -24.55834 -23.60126 -22.08573 -21.73767 -20.73465 -19.74157 -19.08547 -18.58642 -17.56101 -16.88451 -16.68674 -16.04865 -15.91183 -15.58733 -15.51406 -15.24734 -14.93881 -14.45716 -14.25639 -14.04561 -13.80720 -13.30794 -13.25289 -12.61637 -12.51490 -12.37060 -12.13994 -12.06307 -11.62222 -11.36286 -11.32215 -11.24624 -11.19042 -10.87142 -10.72928 -10.48797 -9.88916 -9.78947 -9.29166 -9.28291 -9.14056 -8.73310 -8.49793 -8.32679 -6.24062 -4.28326 0.18470 0.70897 1.61609 1.73782 1.89327 2.27106 2.49020 3.20292 3.27278 3.34768 3.40898 3.58911 3.86834 3.95203 4.11640 4.31679 4.42814 4.58958 4.66030 4.78348 4.85636 4.87296 4.94860 5.15720 5.20682 5.27474 5.66037 5.69758 5.86524 5.92416 6.02734 6.23459 6.25301 6.44686 6.50485 6.58505 6.80573 6.92505 7.10520 7.23590 7.39936 7.67467 8.02608 8.15942 8.41102 8.56499 8.77521 9.35596 10.87487 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.003249 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.702879 B = 8616.727973 C = 9880.486858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.232 3.768 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.886 5.886 8 Si 0.870 3.130 9 H -0.271 1.271 10 H -0.257 1.257 11 H -0.284 1.284 12 N -0.662 5.662 13 C 0.496 3.504 14 O -0.528 6.528 15 C 0.512 3.488 16 O -0.502 6.502 17 N -0.644 5.644 18 C 0.178 3.822 19 C -0.106 4.106 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.097 4.097 23 C 0.085 3.915 24 N -0.238 5.238 25 C -0.049 4.049 26 C -0.043 4.043 27 N -0.253 5.253 28 N -0.085 5.085 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.407 0.593 34 H 0.432 0.568 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.195 0.805 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -0.774 -28.465 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.131 3.869 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.696 3.304 9 H -0.197 1.197 10 H -0.181 1.181 11 H -0.210 1.210 12 N -0.312 5.312 13 C 0.274 3.726 14 O -0.406 6.406 15 C 0.296 3.704 16 O -0.375 6.375 17 N -0.295 5.295 18 C 0.079 3.921 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.137 4.137 22 C -0.118 4.118 23 C -0.009 4.009 24 N -0.025 5.025 25 C -0.198 4.198 26 C -0.200 4.200 27 N -0.119 5.119 28 N -0.063 5.063 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.277 0.723 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.212 0.788 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.611 -0.605 -26.654 26.788 hybrid contribution 0.587 0.897 -0.983 1.455 sum 3.199 0.292 -27.637 27.823 Atomic orbital electron populations 1.22312 0.98041 1.00474 1.00219 1.19282 0.91239 0.94422 0.81999 0.92962 1.20960 1.46087 0.98549 0.91748 0.90007 1.24859 0.93638 0.98476 0.95203 1.69874 1.46205 1.36462 0.99702 0.86981 0.80082 0.85608 0.77695 1.19688 1.18095 1.21020 1.46406 1.61545 1.14757 1.08514 1.19632 0.81173 0.87332 0.84456 1.90759 1.50317 1.14977 1.84537 1.20976 0.77655 0.87104 0.84706 1.90746 1.46288 1.15598 1.84913 1.43622 1.66094 1.14283 1.05503 1.17493 0.94852 0.93386 0.86331 1.21240 1.00339 0.92671 0.98432 1.21269 0.96348 1.00291 0.92486 1.21018 0.98659 0.93816 1.00243 1.20718 1.00800 0.95288 0.94963 1.17528 1.01871 0.82410 0.99073 1.44776 1.35086 1.11247 1.11415 1.23821 1.03139 0.93206 0.99604 1.23714 1.04900 0.98900 0.92437 1.75201 1.09979 1.09464 1.17224 1.78192 1.21020 0.99797 1.07316 0.95035 0.93218 0.92118 0.92135 0.75767 0.72345 0.83195 0.84306 0.84296 0.84343 0.78830 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.10 37.16 0.34 -2.98 16 2 C 0.23 5.59 2.12 -69.08 -0.15 5.44 16 3 H 0.05 1.35 5.34 -51.93 -0.28 1.07 16 4 C -0.54 -14.56 9.06 -34.45 -0.31 -14.87 16 5 H 0.08 2.35 8.02 -52.49 -0.42 1.93 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 8 Si 0.87 21.41 26.19 -169.99 -4.45 16.96 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.26 -6.10 6.15 56.52 0.35 -5.75 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.66 -14.06 5.06 -55.40 -0.28 -14.34 16 13 C 0.50 10.09 7.85 -11.64 -0.09 9.99 16 14 O -0.53 -11.89 16.15 5.48 0.09 -11.80 16 15 C 0.51 8.98 7.61 -11.64 -0.09 8.89 16 16 O -0.50 -8.93 14.26 5.46 0.08 -8.86 16 17 N -0.64 -9.98 4.58 -10.19 -0.05 -10.02 16 18 C 0.18 2.28 6.26 -83.57 -0.52 1.76 16 19 C -0.11 -1.16 8.65 -39.40 -0.34 -1.50 16 20 C -0.08 -0.63 10.04 -39.58 -0.40 -1.03 16 21 C -0.12 -0.70 10.04 -39.56 -0.40 -1.10 16 22 C -0.10 -0.68 9.45 -39.44 -0.37 -1.05 16 23 C 0.09 0.93 6.69 -83.37 -0.56 0.37 16 24 N -0.24 -2.83 3.56 -10.34 -0.04 -2.87 16 25 C -0.05 -0.41 10.91 -16.67 -0.18 -0.59 16 26 C -0.04 -0.42 12.05 -17.72 -0.21 -0.63 16 27 N -0.25 -3.73 12.39 30.24 0.37 -3.35 16 28 N -0.08 -1.30 10.00 60.35 0.60 -0.70 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.34 6.73 -51.93 -0.35 0.99 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.41 8.09 8.03 -40.82 -0.33 7.76 16 34 H 0.43 7.02 6.01 -40.82 -0.25 6.78 16 35 H 0.15 1.76 6.52 -52.49 -0.34 1.42 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.52 6.79 -52.49 -0.36 0.16 16 39 H 0.19 0.65 7.13 -52.49 -0.37 0.27 16 40 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -34.55 345.16 -5.08 -39.63 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.00 Total: 10.67 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -3.38 Total: 4.93 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 1.39 Total: -56.74 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.45 Total: 16.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.55 -5.08 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122822758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.056 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds