Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47195 * 2 1 4 4 C 1.50700 * 109.47131 * 119.99643 * 2 1 3 5 5 H 1.08003 * 119.99875 * 119.99882 * 4 2 1 6 6 C 1.37881 * 120.00045 * 300.00546 * 4 2 1 7 7 N 1.31510 * 120.00016 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99729 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47255 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47524 * 119.99949 * 8 6 4 11 11 H 1.48506 * 109.47097 * 239.99784 * 8 6 4 12 12 N 1.46497 * 109.47586 * 239.99947 * 2 1 3 13 13 C 1.34785 * 119.99899 * 84.99822 * 12 2 1 14 14 O 1.21354 * 119.99964 * 0.02562 * 13 12 2 15 15 C 1.49340 * 119.99771 * 180.02562 * 13 12 2 16 16 O 1.21385 * 119.99970 * 0.02562 * 15 13 12 17 17 N 1.34772 * 119.99996 * 180.02562 * 15 13 12 18 18 C 1.39761 * 120.00083 * 185.28106 * 17 15 13 19 19 C 1.38950 * 120.01214 * 33.39310 * 18 17 15 20 20 C 1.37999 * 119.98924 * 179.97438 * 19 18 17 21 21 C 1.38868 * 120.01240 * 359.97438 * 20 19 18 22 22 N 1.40285 * 119.99253 * 180.02562 * 21 20 19 23 23 C 1.36098 * 125.94414 * 180.02562 * 22 21 20 24 24 C 1.35384 * 106.05003 * 179.97438 * 23 22 21 25 25 N 1.33757 * 106.53712 * 359.97438 * 24 23 22 26 26 N 1.28606 * 109.06207 * 359.97438 * 25 24 23 27 27 C 1.38871 * 120.01916 * 0.29164 * 21 20 19 28 28 C 1.37996 * 120.00812 * 359.45282 * 27 21 20 29 29 H 1.08997 * 109.46764 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46969 * 300.00499 * 1 2 3 31 31 H 1.09000 * 109.46885 * 59.99887 * 1 2 3 32 32 H 0.97000 * 119.99988 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00238 * 265.00179 * 12 2 1 34 34 H 0.97000 * 119.99773 * 5.27396 * 17 15 13 35 35 H 1.07996 * 120.00631 * 359.95975 * 19 18 17 36 36 H 1.08005 * 119.99926 * 180.02562 * 20 19 18 37 37 H 1.08005 * 126.97285 * 359.70982 * 23 22 21 38 38 H 1.08002 * 126.72657 * 179.97438 * 24 23 22 39 39 H 1.07996 * 119.99168 * 179.70784 * 27 21 20 40 40 H 1.08008 * 120.00671 * 180.27401 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1465 -0.1873 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0185 -0.6906 -1.1961 13 6 2.1472 -0.0182 -2.3571 14 8 1.8589 1.1594 -2.4115 15 6 2.6446 -0.7223 -3.5766 16 8 2.9324 -1.9003 -3.5222 17 7 2.7738 -0.0499 -4.7374 18 6 3.1329 -0.7314 -5.9035 19 6 2.7098 -2.0400 -6.1020 20 6 3.0643 -2.7123 -7.2539 21 6 3.8432 -2.0811 -8.2148 22 7 4.2028 -2.7648 -9.3858 23 6 4.9586 -2.2661 -10.4019 24 6 5.0550 -3.2580 -11.3183 25 7 4.3680 -4.2962 -10.8293 26 7 3.8770 -3.9736 -9.6853 27 6 4.2709 -0.7752 -8.0143 28 6 3.9126 -0.1003 -6.8652 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7093 1.1618 3.4844 33 1 2.2492 -1.6317 -1.1526 34 1 2.6174 0.9070 -4.7635 35 1 2.1039 -2.5309 -5.3549 36 1 2.7351 -3.7293 -7.4085 37 1 5.3899 -1.2780 -10.4662 38 1 5.5832 -3.2185 -12.2595 39 1 4.8806 -0.2864 -8.7597 40 1 4.2416 0.9169 -6.7114 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122827596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = 71.342626 kcal Electronic energy + Delta-G solvation = -26093.404411 eV Core-core repulsion = 22104.271512 eV Total energy + Delta-G solvation = -3989.132899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.75344 -41.08517 -39.51018 -38.16618 -35.97844 -35.09152 -33.80855 -32.50827 -32.08450 -31.07769 -29.61227 -29.12509 -25.58513 -25.33182 -24.25187 -23.70177 -22.28298 -21.66401 -20.85433 -19.77188 -19.10804 -18.83162 -17.74885 -16.81358 -16.56748 -16.05240 -15.84045 -15.71119 -15.34947 -15.07632 -14.84738 -14.46012 -14.31232 -14.04182 -13.78102 -13.41863 -13.35578 -13.15229 -12.57627 -12.31530 -11.90475 -11.87748 -11.58287 -11.37459 -11.35202 -11.19964 -11.07891 -10.88945 -10.42732 -10.36942 -10.33823 -9.83833 -9.58430 -9.27858 -9.19543 -8.70758 -8.42822 -8.24352 -6.24400 -4.34228 0.14054 0.80394 1.38482 1.78854 1.88596 2.19453 2.41845 3.18425 3.19479 3.26918 3.30352 3.53714 3.85994 3.94468 4.11989 4.26403 4.32666 4.52600 4.68666 4.71087 4.82040 4.89118 5.04085 5.09067 5.20794 5.31647 5.44607 5.67458 5.75436 5.91934 5.93178 6.21260 6.50089 6.62909 6.74252 6.83557 6.93334 7.09176 7.26995 7.53578 7.62819 7.73986 7.96996 8.09073 8.30608 8.49371 8.75486 9.33222 10.81645 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.001973 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.937036 B =14187.487023 C =14620.662086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.665 5.665 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.509 3.491 16 O -0.499 6.499 17 N -0.653 5.653 18 C 0.168 3.832 19 C -0.104 4.104 20 C -0.074 4.074 21 C 0.093 3.907 22 N -0.234 5.234 23 C -0.052 4.052 24 C -0.046 4.046 25 N -0.267 5.267 26 N -0.079 5.079 27 C -0.092 4.092 28 C -0.125 4.125 29 H 0.031 0.969 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.427 0.573 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.139 0.861 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 -0.792 -23.113 24.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.314 5.314 13 C 0.273 3.727 14 O -0.412 6.412 15 C 0.292 3.708 16 O -0.371 6.371 17 N -0.300 5.300 18 C 0.072 3.928 19 C -0.125 4.125 20 C -0.094 4.094 21 C 0.001 3.999 22 N -0.022 5.022 23 C -0.200 4.200 24 C -0.202 4.202 25 N -0.133 5.133 26 N -0.058 5.058 27 C -0.114 4.114 28 C -0.146 4.146 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.238 0.762 34 H 0.266 0.734 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.211 0.789 38 H 0.211 0.789 39 H 0.157 0.843 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.722 -1.971 -22.418 23.220 hybrid contribution 0.992 0.696 0.479 1.303 sum 6.714 -1.275 -21.938 22.978 Atomic orbital electron populations 1.22103 0.97711 0.99643 1.01286 1.19022 0.91527 0.94162 0.79265 0.92702 1.21217 1.32858 1.13537 0.89952 0.91650 1.24881 0.94649 0.94927 0.99146 1.69893 1.35661 1.22338 1.24068 0.86331 0.78669 0.79561 0.82219 1.19595 1.20793 1.20761 1.46539 1.61002 1.14606 1.09237 1.19572 0.81409 0.87314 0.84425 1.90742 1.50861 1.15107 1.84500 1.21098 0.77612 0.87267 0.84799 1.90765 1.45852 1.15627 1.84880 1.43330 1.67152 1.13483 1.06001 1.17937 0.95155 0.92996 0.86694 1.21173 1.00256 0.93799 0.97274 1.20860 0.96061 1.00938 0.91573 1.17636 1.03895 0.92529 0.85824 1.44748 1.32934 1.10343 1.14131 1.23842 1.02673 1.03410 0.90078 1.23661 1.04113 0.90173 1.02280 1.75129 1.10735 1.24973 1.02449 1.78394 1.20258 0.95830 1.11295 1.20611 1.00547 0.91716 0.98485 1.20779 0.98580 1.01493 0.93752 0.95028 0.88647 0.96438 0.92439 0.76242 0.73444 0.83092 0.83512 0.78938 0.78869 0.84284 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.26 37.16 0.34 -3.14 16 2 C 0.26 6.27 2.56 -69.08 -0.18 6.10 16 3 H 0.06 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.07 1.62 7.74 -52.48 -0.41 1.21 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.77 11.32 55.43 0.63 -23.14 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.67 -13.36 5.06 -55.40 -0.28 -13.64 16 13 C 0.49 9.08 7.85 -11.63 -0.09 8.98 16 14 O -0.53 -10.86 16.14 5.49 0.09 -10.77 16 15 C 0.51 7.63 7.62 -11.64 -0.09 7.54 16 16 O -0.50 -8.11 14.16 5.47 0.08 -8.03 16 17 N -0.65 -7.47 5.32 -10.28 -0.05 -7.53 16 18 C 0.17 1.72 6.28 -83.71 -0.53 1.20 16 19 C -0.10 -1.15 8.65 -39.41 -0.34 -1.49 16 20 C -0.07 -0.76 9.61 -39.44 -0.38 -1.14 16 21 C 0.09 0.87 6.68 -83.52 -0.56 0.31 16 22 N -0.23 -2.35 3.56 -10.44 -0.04 -2.39 16 23 C -0.05 -0.37 10.92 -16.68 -0.18 -0.55 16 24 C -0.05 -0.37 12.05 -17.73 -0.21 -0.58 16 25 N -0.27 -3.22 12.39 30.24 0.37 -2.84 16 26 N -0.08 -0.99 12.41 60.35 0.75 -0.24 16 27 C -0.09 -0.64 9.45 -39.44 -0.37 -1.01 16 28 C -0.12 -0.93 9.96 -39.40 -0.39 -1.32 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.40 7.52 8.01 -40.82 -0.33 7.20 16 34 H 0.43 4.17 8.30 -40.82 -0.34 3.83 16 35 H 0.15 1.82 6.41 -52.49 -0.34 1.48 16 36 H 0.15 1.48 7.69 -52.48 -0.40 1.08 16 37 H 0.19 0.52 7.10 -52.48 -0.37 0.15 16 38 H 0.19 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.14 0.52 6.76 -52.49 -0.35 0.16 16 40 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -31.66 352.49 -5.61 -37.27 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.07 Total: 8.40 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.37 Total: 2.55 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 1.38 Total: -49.79 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.17 Total: -18.80 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.66 -5.61 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122827596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.609 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds