Wall clock time and date at job start Tue Mar 31 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47238 * 2 1 4 4 C 1.50701 * 109.47066 * 240.00037 * 2 1 3 5 5 H 1.08000 * 119.99948 * 245.25756 * 4 2 1 6 6 C 1.37877 * 120.00195 * 65.25300 * 4 2 1 7 7 N 1.31510 * 120.00630 * 184.83754 * 6 4 2 8 8 Si 1.86801 * 119.99715 * 5.11874 * 6 4 2 9 9 H 1.48501 * 109.46943 * 269.72287 * 8 6 4 10 10 H 1.48501 * 109.47451 * 29.72041 * 8 6 4 11 11 H 1.48503 * 109.47248 * 149.72391 * 8 6 4 12 12 N 1.46504 * 109.47387 * 119.99998 * 2 1 3 13 13 C 1.34770 * 119.99962 * 275.00055 * 12 2 1 14 14 O 1.21358 * 120.00481 * 359.97438 * 13 12 2 15 15 C 1.49349 * 119.99914 * 179.97438 * 13 12 2 16 16 O 1.21381 * 119.99751 * 359.97438 * 15 13 12 17 17 N 1.34770 * 119.99914 * 179.97438 * 15 13 12 18 18 C 1.39741 * 119.99816 * 185.37810 * 17 15 13 19 19 C 1.38966 * 120.00683 * 214.49831 * 18 17 15 20 20 C 1.37991 * 119.98782 * 179.74533 * 19 18 17 21 21 C 1.38886 * 120.00649 * 0.52631 * 20 19 18 22 22 N 1.40234 * 119.99038 * 179.70377 * 21 20 19 23 23 N 1.28598 * 124.61192 * 179.72279 * 22 21 20 24 24 C 1.31435 * 108.72252 * 179.88812 * 23 22 21 25 25 C 1.39719 * 105.88787 * 0.35711 * 24 23 22 26 26 N 1.28600 * 124.60479 * 0.02562 * 22 21 20 27 27 C 1.38890 * 120.02062 * 359.72517 * 21 20 19 28 28 C 1.37976 * 120.00786 * 0.02562 * 27 21 20 29 29 H 1.09003 * 109.47422 * 174.98420 * 1 2 3 30 30 H 1.09000 * 109.47005 * 294.98019 * 1 2 3 31 31 H 1.08994 * 109.47536 * 54.98031 * 1 2 3 32 32 H 0.97007 * 119.99427 * 355.28334 * 7 6 4 33 33 H 0.97006 * 119.99536 * 94.99390 * 12 2 1 34 34 H 0.97000 * 119.99911 * 5.37878 * 17 15 13 35 35 H 1.07998 * 120.00642 * 359.97406 * 19 18 17 36 36 H 1.07997 * 119.99867 * 180.27634 * 20 19 18 37 37 H 1.07993 * 127.06029 * 180.17089 * 24 23 22 38 38 H 1.07998 * 127.05700 * 179.81673 * 25 24 23 39 39 H 1.08003 * 119.99620 * 179.97438 * 27 21 20 40 40 H 1.08005 * 120.00503 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5813 -1.6354 -1.1337 6 6 1.7908 -0.1796 -2.4799 7 7 2.1449 -0.8457 -3.5571 8 14 0.9677 1.4894 -2.6424 9 1 -0.5047 1.3103 -2.7135 10 1 1.3082 2.3262 -1.4637 11 1 1.4453 2.1586 -3.8791 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1593 2.4116 15 6 2.6444 -0.7225 3.5766 16 8 2.9323 -1.9004 3.5223 17 7 2.7737 -0.0500 4.7374 18 6 3.3438 -0.6772 5.8484 19 6 2.8871 -0.3773 7.1262 20 6 3.4469 -1.0007 8.2226 21 6 4.4739 -1.9196 8.0500 22 7 5.0467 -2.5483 9.1650 23 7 5.9957 -3.4142 9.1079 24 6 6.2924 -3.7961 10.3300 25 6 5.4289 -3.0904 11.1716 26 7 4.6904 -2.3414 10.3833 27 6 4.9341 -2.2157 6.7735 28 6 4.3715 -1.5966 5.6763 29 1 -0.3634 -1.0237 -0.0899 30 1 -0.3633 0.4340 0.9315 31 1 -0.3634 0.5897 -0.8415 32 1 2.6368 -1.6776 -3.4730 33 1 2.2490 -1.6319 1.1526 34 1 2.4709 0.8693 4.8016 35 1 2.0918 0.3408 7.2608 36 1 3.0890 -0.7711 9.2154 37 1 7.0467 -4.5112 10.6234 38 1 5.3787 -3.1480 12.2489 39 1 5.7331 -2.9300 6.6398 40 1 4.7297 -1.8266 4.6836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123073103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:06 Heat of formation + Delta-G solvation = 84.345707 kcal Electronic energy + Delta-G solvation = -26185.471775 eV Core-core repulsion = 22196.902732 eV Total energy + Delta-G solvation = -3988.569043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.12807 -41.08689 -39.50411 -38.21607 -35.85562 -35.11772 -33.25997 -33.05433 -32.53242 -31.39897 -30.05295 -29.21304 -25.63851 -24.90859 -24.20269 -23.62123 -22.43763 -21.56156 -20.69917 -19.84444 -18.98061 -18.77298 -17.80250 -17.25821 -17.06965 -16.27745 -16.03996 -15.67117 -15.42552 -15.19053 -14.73155 -14.54610 -14.16515 -13.95942 -13.64945 -13.35520 -13.25775 -13.19594 -12.85832 -12.32483 -12.02408 -11.93822 -11.89916 -11.59510 -11.47111 -11.27395 -11.05595 -10.79246 -10.65864 -10.19624 -10.00422 -9.87777 -9.52697 -9.35182 -8.99723 -8.68032 -8.48446 -8.28193 -6.64782 -4.33941 0.26291 0.90103 1.43386 1.86735 1.87614 2.05458 2.38818 3.23746 3.28885 3.37886 3.47735 3.50889 3.72357 3.80250 4.33076 4.39847 4.46033 4.56660 4.72125 4.79809 4.91375 4.97153 5.12263 5.13136 5.35565 5.58599 5.60443 5.66045 5.81936 5.94670 5.97743 6.19748 6.26357 6.28742 6.43526 6.60839 6.67805 6.78963 7.00568 7.10688 7.40722 7.60628 7.90522 8.07539 8.18260 8.37494 8.68573 9.37432 10.76400 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.036492 B = 0.002041 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.104573 B =13716.972036 C =14250.013898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.233 3.767 3 H 0.054 0.946 4 C -0.613 4.613 5 H 0.065 0.935 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.051 2.949 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.660 5.660 13 C 0.496 3.504 14 O -0.534 6.534 15 C 0.510 3.490 16 O -0.498 6.498 17 N -0.651 5.651 18 C 0.163 3.837 19 C -0.126 4.126 20 C -0.080 4.080 21 C 0.116 3.884 22 N -0.098 5.098 23 N -0.287 5.287 24 C -0.021 4.021 25 C -0.022 4.022 26 N -0.289 5.289 27 C -0.078 4.078 28 C -0.104 4.104 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.270 0.730 33 H 0.407 0.593 34 H 0.426 0.574 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.203 0.797 38 H 0.203 0.797 39 H 0.146 0.854 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 -1.536 27.647 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.130 3.870 3 H 0.072 0.928 4 C -0.652 4.652 5 H 0.084 0.916 6 C -0.170 4.170 7 N -0.533 5.533 8 Si 0.879 3.121 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.308 5.308 13 C 0.274 3.726 14 O -0.413 6.413 15 C 0.292 3.708 16 O -0.370 6.370 17 N -0.299 5.299 18 C 0.067 3.933 19 C -0.148 4.148 20 C -0.101 4.101 21 C 0.026 3.974 22 N 0.009 4.991 23 N -0.126 5.126 24 C -0.204 4.204 25 C -0.204 4.204 26 N -0.129 5.129 27 C -0.099 4.099 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.242 0.758 34 H 0.265 0.735 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.219 0.781 38 H 0.219 0.781 39 H 0.164 0.836 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.606 0.124 25.333 25.589 hybrid contribution 1.021 -1.791 2.055 2.911 sum 4.627 -1.667 27.389 27.827 Atomic orbital electron populations 1.22416 0.98496 1.01376 0.99573 1.19460 0.90818 0.94909 0.81815 0.92786 1.22134 1.41167 1.11094 0.90756 0.91647 1.25726 0.96217 1.03542 0.91483 1.70822 1.35576 1.16805 1.30120 0.83920 0.76487 0.75409 0.76236 1.20682 1.19968 1.21250 1.46244 1.61136 1.14715 1.08746 1.19657 0.81109 0.87272 0.84513 1.90735 1.50714 1.15122 1.84747 1.20918 0.78206 0.86952 0.84685 1.90778 1.46685 1.15031 1.84528 1.43274 1.59992 1.17602 1.09017 1.17903 0.93001 0.95719 0.86632 1.20810 1.01292 1.02703 0.89948 1.20671 0.94413 0.94739 1.00265 1.17396 0.98409 0.98661 0.82939 1.44876 1.22896 1.27284 1.04021 1.74129 1.06106 1.06709 1.25674 1.24950 1.03529 1.04092 0.87823 1.24939 0.96168 0.97576 1.01740 1.74092 1.24335 1.23522 0.90909 1.20794 1.00270 0.99834 0.88996 1.21081 0.94493 0.97025 0.99925 0.92702 0.94626 0.92649 0.91959 0.75776 0.73515 0.83846 0.83572 0.78053 0.78064 0.83577 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.07 37.16 0.34 -3.05 16 2 C 0.23 5.35 2.14 -69.08 -0.15 5.20 16 3 H 0.05 1.33 6.09 -51.93 -0.32 1.01 16 4 C -0.61 -16.18 9.10 -34.44 -0.31 -16.50 16 5 H 0.07 1.82 7.95 -52.49 -0.42 1.40 16 6 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 7 N -0.90 -26.43 13.70 55.43 0.76 -25.67 16 8 Si 1.05 24.41 25.27 -169.99 -4.30 20.12 16 9 H -0.28 -6.14 6.82 56.52 0.39 -5.76 16 10 H -0.27 -6.06 6.35 56.52 0.36 -5.70 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.66 -13.11 5.06 -55.40 -0.28 -13.39 16 13 C 0.50 8.94 7.85 -11.64 -0.09 8.85 16 14 O -0.53 -10.47 16.15 5.49 0.09 -10.38 16 15 C 0.51 7.71 7.61 -11.64 -0.09 7.62 16 16 O -0.50 -8.26 14.26 5.47 0.08 -8.18 16 17 N -0.65 -7.69 5.32 -10.28 -0.05 -7.75 16 18 C 0.16 1.80 6.25 -83.71 -0.52 1.28 16 19 C -0.13 -1.12 9.96 -39.40 -0.39 -1.52 16 20 C -0.08 -0.75 9.58 -39.43 -0.38 -1.13 16 21 C 0.12 1.30 6.72 -83.53 -0.56 0.74 16 22 N -0.10 -1.13 4.13 32.51 0.13 -1.00 16 23 N -0.29 -3.17 11.21 30.69 0.34 -2.83 16 24 C -0.02 -0.16 12.20 -17.17 -0.21 -0.37 16 25 C -0.02 -0.16 12.20 -17.17 -0.21 -0.37 16 26 N -0.29 -3.06 11.21 30.69 0.34 -2.71 16 27 C -0.08 -0.86 9.58 -39.44 -0.38 -1.24 16 28 C -0.10 -1.22 8.64 -39.41 -0.34 -1.56 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.18 4.39 -51.93 -0.23 0.95 16 32 H 0.27 7.88 8.72 -40.82 -0.36 7.52 16 33 H 0.41 7.72 8.00 -40.82 -0.33 7.40 16 34 H 0.43 4.25 8.30 -40.82 -0.34 3.91 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.15 1.21 7.62 -52.49 -0.40 0.81 16 37 H 0.20 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.20 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.15 1.53 7.62 -52.48 -0.40 1.13 16 40 H 0.15 1.87 6.52 -52.48 -0.34 1.53 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -32.67 348.55 -5.12 -37.78 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.09 Total: 9.91 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.39 Total: -1.14 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 1.25 Total: -53.36 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.30 Total: 20.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.67 -5.12 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123073103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.127 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds