Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86803 * 119.99586 * 2 1 4 4 H 1.48493 * 109.47206 * 274.98207 * 3 2 1 5 5 H 1.48501 * 109.47044 * 34.98621 * 3 2 1 6 6 H 1.48500 * 109.46625 * 154.98046 * 3 2 1 7 7 C 1.38983 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00199 * 185.93686 * 7 2 1 9 9 N 1.37325 * 119.99918 * 5.94055 * 7 2 1 10 10 C 1.36491 * 126.06451 * 174.13518 * 9 7 2 11 11 C 1.35701 * 107.50253 * 180.02562 * 10 9 7 12 12 N 1.40527 * 126.08498 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00003 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00055 * 0.02562 * 13 12 11 15 15 C 1.47824 * 119.99994 * 179.97438 * 13 12 11 16 16 C 1.39587 * 120.14307 * 359.72867 * 15 13 12 17 17 C 1.37957 * 119.84812 * 179.70199 * 16 15 13 18 18 C 1.38361 * 120.14773 * 0.56934 * 17 16 15 19 19 C 1.50700 * 119.85588 * 179.74288 * 18 17 16 20 20 N 1.46495 * 109.47365 * 269.98421 * 19 18 17 21 21 C 1.34777 * 119.99836 * 179.97438 * 20 19 18 22 22 N 1.34782 * 119.99702 * 180.02562 * 21 20 19 23 23 O 1.21582 * 120.00359 * 0.02562 * 21 20 19 24 24 C 1.38367 * 120.29209 * 359.72523 * 18 17 16 25 25 C 1.37950 * 120.14771 * 359.97438 * 24 18 17 26 26 C 1.40662 * 107.83014 * 359.97438 * 11 10 9 27 27 N 1.30907 * 108.38709 * 0.02562 * 26 11 10 28 28 H 0.96996 * 120.00371 * 359.97438 * 1 2 3 29 29 H 1.07993 * 126.24851 * 359.74414 * 10 9 7 30 30 H 0.96998 * 120.00030 * 359.97438 * 12 11 10 31 31 H 1.07993 * 120.07510 * 359.97353 * 16 15 13 32 32 H 1.07999 * 119.92818 * 180.30038 * 17 16 15 33 33 H 1.09003 * 109.46310 * 29.98535 * 19 18 17 34 34 H 1.09005 * 109.46701 * 149.97992 * 19 18 17 35 35 H 0.97003 * 120.00075 * 359.97438 * 20 19 18 36 36 H 0.96994 * 119.99950 * 359.97438 * 22 21 20 37 37 H 0.97002 * 119.99510 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.92300 * 179.97438 * 24 18 17 39 39 H 1.07995 * 120.07692 * 179.97438 * 25 24 18 40 40 H 1.07997 * 125.80720 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3890 2.1073 -1.3947 5 1 1.5009 2.6200 0.8028 6 1 3.5931 1.4121 0.5921 7 6 2.0079 -1.2036 -0.0005 8 1 3.0836 -1.2061 0.0962 9 7 1.3269 -2.3896 -0.1242 10 6 1.8865 -3.6280 -0.2521 11 6 0.8734 -4.5258 -0.3467 12 7 1.0110 -5.9168 -0.4915 13 6 -0.0845 -6.6975 -0.5735 14 8 -1.1919 -6.1982 -0.5226 15 6 0.0603 -8.1606 -0.7264 16 6 1.3303 -8.7363 -0.7919 17 6 1.4584 -10.1031 -0.9285 18 6 0.3316 -10.9017 -1.0123 19 6 0.4792 -12.3934 -1.1673 20 7 0.5277 -12.7341 -2.5912 21 6 0.6581 -14.0203 -2.9723 22 7 0.7032 -14.3337 -4.2824 23 8 0.7350 -14.8979 -2.1343 24 6 -0.9301 -10.3368 -0.9542 25 6 -1.0723 -8.9721 -0.8115 26 6 -0.3390 -3.8164 -0.2740 27 7 -0.0652 -2.5432 -0.1415 28 1 -0.4850 0.8400 0.0004 29 1 2.9426 -3.8518 -0.2782 30 1 1.8945 -6.3151 -0.5325 31 1 2.2105 -8.1136 -0.7315 32 1 2.4403 -10.5503 -0.9745 33 1 1.4003 -12.7194 -0.6841 34 1 -0.3712 -12.8928 -0.7028 35 1 0.4659 -12.0341 -3.2598 36 1 0.6414 -13.6336 -4.9509 37 1 0.7966 -15.2594 -4.5566 38 1 -1.8056 -10.9657 -1.0206 39 1 -2.0577 -8.5323 -0.7667 40 1 -1.3277 -4.2486 -0.3196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139654404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = 45.297686 kcal Electronic energy + Delta-G solvation = -25654.895318 eV Core-core repulsion = 21664.633026 eV Total energy + Delta-G solvation = -3990.262292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48844 -40.06560 -39.37613 -38.12286 -35.17030 -34.35180 -34.01599 -33.24555 -31.51207 -31.18227 -30.24197 -28.00372 -26.61891 -24.85156 -22.89632 -22.77290 -21.51605 -21.02019 -20.38428 -19.43705 -18.76068 -17.96607 -17.71653 -17.20932 -16.06787 -15.52723 -15.46741 -15.41300 -15.23163 -15.00376 -14.67780 -14.66019 -14.30793 -13.94003 -13.77269 -13.28483 -13.21112 -12.99353 -12.89675 -12.57437 -11.79527 -11.68540 -11.48633 -11.30239 -11.27236 -10.96559 -10.74115 -10.55034 -10.22080 -10.10929 -9.43414 -9.32974 -9.22890 -9.20712 -9.08978 -8.84579 -8.09409 -6.73972 -6.59506 -4.26134 0.58445 1.14227 2.49308 2.84401 2.88265 3.02626 3.03666 3.08571 3.49937 3.53736 3.84222 3.86709 4.14727 4.26042 4.42831 4.50683 4.64745 4.72908 4.94299 4.98117 5.10240 5.13250 5.28540 5.41437 5.58298 5.75916 5.99832 6.04190 6.16000 6.21770 6.23660 6.30014 6.42758 6.51106 6.63126 6.86620 6.92118 7.07228 7.19868 7.54751 7.82542 8.11752 8.23285 8.23348 8.58451 8.78638 9.34068 9.63016 10.36718 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.038439 B = 0.001801 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.242869 B =15547.087542 C =15891.393603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.062 4.062 12 N -0.614 5.614 13 C 0.535 3.465 14 O -0.532 6.532 15 C -0.105 4.105 16 C -0.094 4.094 17 C -0.105 4.105 18 C -0.099 4.099 19 C 0.179 3.821 20 N -0.741 5.741 21 C 0.705 3.295 22 N -0.868 5.868 23 O -0.596 6.596 24 C -0.106 4.106 25 C -0.065 4.065 26 C -0.030 4.030 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.396 0.604 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.399 0.601 36 H 0.397 0.603 37 H 0.415 0.585 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 -21.420 -6.918 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.256 5.256 13 C 0.322 3.678 14 O -0.410 6.410 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.124 4.124 18 C -0.100 4.100 19 C 0.056 3.944 20 N -0.397 5.397 21 C 0.403 3.597 22 N -0.436 5.436 23 O -0.474 6.474 24 C -0.124 4.124 25 C -0.084 4.084 26 C -0.205 4.205 27 N -0.092 5.092 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.230 0.770 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.225 0.775 37 H 0.247 0.753 38 H 0.147 0.853 39 H 0.158 0.842 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.546 -20.333 -5.882 21.319 hybrid contribution 1.331 -0.013 -0.893 1.603 sum 3.877 -20.346 -6.776 21.792 Atomic orbital electron populations 1.70220 1.06173 1.28055 1.35024 1.25652 0.95694 1.00308 0.95433 0.85807 0.79457 0.79999 0.78868 1.19627 1.20069 1.18765 1.19894 0.92176 0.80686 1.52835 0.86551 1.44561 1.04022 1.03730 1.38555 1.21257 0.96804 0.85811 1.19489 1.17260 0.94421 0.81512 1.23616 1.42414 1.08128 1.05357 1.69727 1.18058 0.84676 0.85754 0.79326 1.90677 1.25344 1.74417 1.50546 1.20181 0.94187 0.93657 1.02792 1.21363 0.96577 0.95178 0.98154 1.20990 0.98375 0.93164 0.99853 1.19977 0.93696 0.94694 1.01641 1.20064 1.03267 0.90368 0.80730 1.45167 1.79487 1.06566 1.08514 1.15970 0.77531 0.83071 0.83124 1.42996 1.81919 1.12970 1.05745 1.90983 1.58102 1.47360 1.50996 1.21063 0.96849 0.94733 0.99793 1.21317 0.99064 0.92726 0.95315 1.24129 0.98012 0.90893 1.07504 1.78259 0.90280 1.15082 1.25589 0.91414 0.83646 0.76981 0.85304 0.85328 0.90463 0.90454 0.76658 0.77473 0.75343 0.85257 0.84245 0.80660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.32 11.84 55.49 0.66 -20.66 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 18.70 29.56 -169.99 -5.02 13.68 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.32 -8.47 10.24 -14.81 -0.15 -8.62 16 8 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.42 6.90 -83.86 -0.58 -2.00 16 12 N -0.61 -10.74 5.41 -10.86 -0.06 -10.80 16 13 C 0.54 9.34 7.74 -12.34 -0.10 9.24 16 14 O -0.53 -11.30 13.49 5.29 0.07 -11.23 16 15 C -0.10 -1.34 5.87 -104.97 -0.62 -1.96 16 16 C -0.09 -0.91 9.54 -39.18 -0.37 -1.28 16 17 C -0.11 -0.83 9.68 -39.64 -0.38 -1.22 16 18 C -0.10 -0.78 5.25 -104.53 -0.55 -1.32 16 19 C 0.18 1.33 5.79 -5.20 -0.03 1.30 16 20 N -0.74 -4.89 5.55 -66.41 -0.37 -5.26 16 21 C 0.70 6.07 8.84 -86.91 -0.77 5.30 16 22 N -0.87 -3.89 8.88 27.63 0.25 -3.64 16 23 O -0.60 -7.96 17.18 5.29 0.09 -7.87 16 24 C -0.11 -0.92 9.68 -39.64 -0.38 -1.30 16 25 C -0.07 -0.75 9.60 -39.18 -0.38 -1.12 16 26 C -0.03 -0.78 10.85 -17.03 -0.18 -0.97 16 27 N -0.26 -7.56 10.42 30.80 0.32 -7.23 16 28 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 30 H 0.40 5.25 6.86 -40.82 -0.28 4.97 16 31 H 0.13 1.02 6.40 -52.49 -0.34 0.68 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.40 1.83 8.48 -40.82 -0.35 1.48 16 36 H 0.40 0.64 8.84 -40.82 -0.36 0.28 16 37 H 0.41 1.53 8.93 -40.82 -0.36 1.16 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 40 H 0.18 4.55 5.91 -52.49 -0.31 4.24 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -37.01 353.92 -7.61 -44.62 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.05 Total: 11.91 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -4.78 Total: -4.96 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.75 Total: -51.48 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.16 Total: -19.10 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.01 -7.61 -44.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139654404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.917 kcal (2) G-P(sol) polarization free energy of solvation -37.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds