Wall clock time and date at job start Tue Mar 31 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46949 * 2 1 4 4 C 1.46491 * 120.00485 * 275.00243 * 3 2 1 5 5 C 1.50699 * 109.47166 * 275.00213 * 4 3 2 6 6 H 1.07997 * 120.00277 * 0.02562 * 5 4 3 7 7 C 1.37886 * 120.00149 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47267 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46825 * 120.00062 * 9 7 5 12 12 H 1.48497 * 109.46721 * 239.99710 * 9 7 5 13 13 S 1.65602 * 119.99578 * 95.00263 * 3 2 1 14 14 O 1.42101 * 106.40227 * 156.46071 * 13 3 2 15 15 O 1.42102 * 106.40091 * 23.54194 * 13 3 2 16 16 C 1.76200 * 107.21894 * 270.00005 * 13 3 2 17 17 C 1.39874 * 126.03785 * 270.00076 * 16 13 3 18 18 N 1.30841 * 108.19623 * 179.73763 * 17 16 13 19 19 N 1.40082 * 108.20814 * 0.40999 * 18 17 16 20 20 C 1.46503 * 126.03719 * 179.85633 * 19 18 17 21 21 H 1.09007 * 110.98591 * 28.87866 * 20 19 18 22 22 C 1.55300 * 111.12279 * 264.68513 * 20 19 18 23 23 C 1.54377 * 102.25502 * 207.90513 * 22 20 19 24 24 O 1.43245 * 107.58529 * 21.35358 * 23 22 20 25 25 C 1.43641 * 109.97106 * 1.71442 * 24 23 22 26 26 C 1.34941 * 107.92557 * 359.58406 * 19 18 17 27 27 H 1.09009 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47452 * 299.99172 * 1 2 3 29 29 H 1.09008 * 109.47491 * 59.99672 * 1 2 3 30 30 H 1.09004 * 109.46797 * 240.01048 * 2 1 3 31 31 H 1.08992 * 109.47587 * 120.00672 * 2 1 3 32 32 H 1.09010 * 109.47085 * 35.00048 * 4 3 2 33 33 H 1.08998 * 109.47458 * 154.99767 * 4 3 2 34 34 H 0.96998 * 120.00055 * 180.02562 * 8 7 5 35 35 H 1.07992 * 125.90189 * 359.97438 * 17 16 13 36 36 H 1.09006 * 110.85287 * 89.71138 * 22 20 19 37 37 H 1.09007 * 110.84948 * 326.09707 * 22 20 19 38 38 H 1.09000 * 109.83189 * 261.84669 * 23 22 20 39 39 H 1.09004 * 109.91014 * 140.91129 * 23 22 20 40 40 H 1.08997 * 110.30942 * 94.48681 * 25 24 23 41 41 H 1.08999 * 110.30828 * 216.65652 * 25 24 23 42 42 H 1.07997 * 126.12877 * 180.26690 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2638 5 6 3.4946 1.7890 -1.8823 6 1 4.1719 1.1112 -1.3840 7 6 3.8524 2.3609 -3.0848 8 7 3.0270 3.1851 -3.6924 9 14 5.5093 1.9650 -3.8511 10 1 6.2457 1.0177 -2.9761 11 1 5.3025 1.3469 -5.1854 12 1 6.2965 3.2151 -4.0013 13 16 2.4121 2.1201 1.4288 14 8 3.3283 3.1570 1.1051 15 8 2.7096 1.0797 2.3499 16 6 0.9554 2.9117 2.0255 17 6 0.5551 4.2213 1.7409 18 7 -0.5767 4.4458 2.3579 19 7 -0.9280 3.2876 3.0631 20 6 -2.1237 3.1121 3.8913 21 1 -2.9426 3.7354 3.5317 22 6 -1.8163 3.3997 5.3861 23 6 -2.8533 2.5145 6.1101 24 8 -3.2623 1.4907 5.1954 25 6 -2.5438 1.6223 3.9586 26 6 0.0263 2.3600 2.8401 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.3615 1.8099 -1.9452 33 1 2.0920 3.1803 -1.0754 34 1 3.2784 3.5871 -4.5385 35 1 1.0862 4.9243 1.1165 36 1 -1.9748 4.4526 5.6193 37 1 -0.8011 3.0938 5.6392 38 1 -3.7145 3.1162 6.4007 39 1 -2.4031 2.0624 6.9939 40 1 -1.6627 0.9806 3.9629 41 1 -3.1903 1.3731 3.1172 42 1 0.0451 1.3569 3.2399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153228539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:21 Heat of formation + Delta-G solvation = -33.289891 kcal Electronic energy + Delta-G solvation = -26992.524815 eV Core-core repulsion = 23102.005909 eV Total energy + Delta-G solvation = -3890.518905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57987 -39.65514 -36.56113 -36.01835 -35.09287 -34.15398 -32.64242 -31.09638 -30.40401 -29.94899 -28.84605 -26.57707 -23.99684 -23.10882 -22.76781 -21.91903 -21.42307 -20.61273 -18.78715 -17.78557 -17.18817 -16.78166 -16.44032 -16.04383 -15.58186 -15.45543 -15.20075 -14.91766 -14.48610 -14.33202 -14.10491 -13.84866 -13.34953 -13.11314 -12.90334 -12.85865 -12.24678 -12.11383 -12.08982 -11.97958 -11.75873 -11.65813 -11.48901 -11.29426 -11.24019 -10.98762 -10.87752 -10.53738 -10.44642 -10.35282 -10.15543 -9.95668 -9.71145 -9.65833 -9.19089 -8.41431 -8.03189 -6.03198 -4.06675 1.09604 1.47180 2.03279 2.38464 3.22249 3.33690 3.41557 3.46698 3.77801 3.81888 3.94484 4.24072 4.29405 4.42211 4.46289 4.51934 4.57304 4.67477 5.00737 5.06282 5.14224 5.19040 5.25666 5.31327 5.37875 5.41247 5.46887 5.61455 5.71162 5.77889 5.96870 6.26233 6.27250 6.39519 6.57221 6.62668 6.66119 7.27927 7.37579 7.44088 7.64781 7.94659 8.24029 8.96168 9.58361 11.05395 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.003368 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.470024 B = 8311.831804 C = 8497.824721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.981 5.981 4 C 0.257 3.743 5 C -0.526 4.526 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.282 1.282 13 S 2.713 3.287 14 O -0.943 6.943 15 O -0.984 6.984 16 C -0.800 4.800 17 C 0.142 3.858 18 N -0.293 5.293 19 N -0.358 5.358 20 C 0.122 3.878 21 H 0.125 0.875 22 C -0.169 4.169 23 C 0.052 3.948 24 O -0.371 6.371 25 C 0.043 3.957 26 C 0.165 3.835 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.202 0.798 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 -2.504 16.125 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.821 5.821 4 C 0.135 3.865 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.208 1.208 13 S 2.799 3.201 14 O -0.933 6.933 15 O -0.974 6.974 16 C -0.896 4.896 17 C -0.048 4.048 18 N -0.111 5.111 19 N -0.137 5.137 20 C 0.019 3.981 21 H 0.143 0.857 22 C -0.207 4.207 23 C -0.025 4.025 24 O -0.289 6.289 25 C -0.035 4.035 26 C 0.014 3.986 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.218 0.782 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.624 -1.665 16.754 21.658 hybrid contribution 0.878 -0.221 -0.790 1.201 sum -12.746 -1.886 15.964 20.515 Atomic orbital electron populations 1.22258 0.97553 1.01323 1.01860 1.21167 0.92839 0.83211 1.03755 1.57435 1.81203 1.21036 1.22406 1.19066 0.97369 0.91315 0.78732 1.21539 1.02050 1.27551 1.05433 0.92004 1.24925 0.97308 0.94874 0.96912 1.69931 1.36016 1.30403 1.17158 0.86475 0.83968 0.78335 0.78866 1.19604 1.21089 1.20840 1.01339 0.73203 0.73146 0.72399 1.93588 1.58405 1.57937 1.83374 1.93472 1.83419 1.56886 1.63611 1.32274 1.27540 1.08281 1.21495 1.23668 0.91685 0.94080 0.95328 1.77440 1.16574 1.04669 1.12466 1.48901 1.17735 1.10177 1.36895 1.23053 0.85987 0.99008 0.90075 0.85701 1.23602 1.01403 1.02690 0.93035 1.23153 0.97305 0.89058 0.92973 1.88507 1.63960 1.52296 1.24127 1.23739 0.98129 0.93127 0.88477 1.22335 0.86963 0.95608 0.93708 0.92155 0.93920 0.91876 0.89452 0.90392 0.94649 0.94272 0.92797 0.78171 0.88461 0.89360 0.90286 0.90347 0.90687 0.87755 0.79606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.12 1.92 6.40 -4.04 -0.03 1.89 16 3 N -0.98 -19.59 2.77 -115.67 -0.32 -19.91 16 4 C 0.26 6.23 5.10 -5.20 -0.03 6.20 16 5 C -0.53 -14.43 9.38 -34.44 -0.32 -14.75 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.73 5.46 -17.81 -0.10 1.63 16 8 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 S 2.71 52.55 5.79 -107.50 -0.62 51.93 16 14 O -0.94 -21.90 16.84 -57.17 -0.96 -22.86 16 15 O -0.98 -19.32 16.40 -57.17 -0.94 -20.25 16 16 C -0.80 -12.79 6.17 -40.01 -0.25 -13.04 16 17 C 0.14 2.25 11.82 -17.36 -0.21 2.05 16 18 N -0.29 -4.38 12.58 30.62 0.39 -4.00 16 19 N -0.36 -4.40 3.68 -52.69 -0.19 -4.59 16 20 C 0.12 1.06 4.26 -65.69 -0.28 0.78 16 21 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.17 -1.20 6.72 -24.79 -0.17 -1.36 16 23 C 0.05 0.32 7.79 37.88 0.30 0.62 16 24 O -0.37 -3.18 11.36 -35.23 -0.40 -3.58 16 25 C 0.04 0.33 7.15 38.18 0.27 0.61 16 26 C 0.17 2.15 9.52 -17.23 -0.16 1.98 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.04 0.52 7.31 -51.93 -0.38 0.14 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 31 H 0.08 1.18 6.91 -51.93 -0.36 0.83 16 32 H 0.04 0.87 8.11 -51.92 -0.42 0.45 16 33 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.20 2.98 8.06 -52.49 -0.42 2.56 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.55 6.21 -51.93 -0.32 0.22 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.19 1.87 6.75 -52.49 -0.35 1.51 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -34.39 363.89 -8.44 -42.83 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.00 Total: -1.30 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -0.59 Total: -15.30 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.61 Total: -53.53 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -2.30 Total: -46.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 52.55 SS G_CDS: -0.62 Total: 51.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.39 -8.44 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153228539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.544 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds