Wall clock time and date at job start Tue Mar 31 2020 04:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46949 * 2 1 4 4 C 1.46491 * 120.00485 * 275.00243 * 3 2 1 5 5 C 1.50699 * 109.47166 * 275.00213 * 4 3 2 6 6 H 1.07997 * 120.00277 * 0.02562 * 5 4 3 7 7 C 1.37886 * 120.00149 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99843 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47267 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46825 * 120.00062 * 9 7 5 12 12 H 1.48497 * 109.46721 * 239.99710 * 9 7 5 13 13 S 1.65602 * 119.99578 * 95.00263 * 3 2 1 14 14 O 1.42101 * 106.40227 * 156.46071 * 13 3 2 15 15 O 1.42102 * 106.40091 * 23.54194 * 13 3 2 16 16 C 1.76200 * 107.21894 * 270.00005 * 13 3 2 17 17 C 1.39874 * 126.03785 * 270.00076 * 16 13 3 18 18 N 1.30841 * 108.19623 * 179.73763 * 17 16 13 19 19 N 1.40082 * 108.20814 * 0.40999 * 18 17 16 20 20 C 1.46503 * 126.03719 * 179.85633 * 19 18 17 21 21 H 1.09007 * 110.98591 * 28.87866 * 20 19 18 22 22 C 1.55300 * 111.12279 * 264.68513 * 20 19 18 23 23 C 1.54377 * 102.25502 * 207.90513 * 22 20 19 24 24 O 1.43245 * 107.58529 * 21.35358 * 23 22 20 25 25 C 1.43641 * 109.97106 * 1.71442 * 24 23 22 26 26 C 1.34941 * 107.92557 * 359.58406 * 19 18 17 27 27 H 1.09009 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47452 * 299.99172 * 1 2 3 29 29 H 1.09008 * 109.47491 * 59.99672 * 1 2 3 30 30 H 1.09004 * 109.46797 * 240.01048 * 2 1 3 31 31 H 1.08992 * 109.47587 * 120.00672 * 2 1 3 32 32 H 1.09010 * 109.47085 * 35.00048 * 4 3 2 33 33 H 1.08998 * 109.47458 * 154.99767 * 4 3 2 34 34 H 0.96998 * 120.00055 * 180.02562 * 8 7 5 35 35 H 1.07992 * 125.90189 * 359.97438 * 17 16 13 36 36 H 1.09006 * 110.85287 * 89.71138 * 22 20 19 37 37 H 1.09007 * 110.84948 * 326.09707 * 22 20 19 38 38 H 1.09000 * 109.83189 * 261.84669 * 23 22 20 39 39 H 1.09004 * 109.91014 * 140.91129 * 23 22 20 40 40 H 1.08997 * 110.30942 * 94.48681 * 25 24 23 41 41 H 1.08999 * 110.30828 * 216.65652 * 25 24 23 42 42 H 1.07997 * 126.12877 * 180.26690 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2638 5 6 3.4946 1.7890 -1.8823 6 1 4.1719 1.1112 -1.3840 7 6 3.8524 2.3609 -3.0848 8 7 3.0270 3.1851 -3.6924 9 14 5.5093 1.9650 -3.8511 10 1 6.2457 1.0177 -2.9761 11 1 5.3025 1.3469 -5.1854 12 1 6.2965 3.2151 -4.0013 13 16 2.4121 2.1201 1.4288 14 8 3.3283 3.1570 1.1051 15 8 2.7096 1.0797 2.3499 16 6 0.9554 2.9117 2.0255 17 6 0.5551 4.2213 1.7409 18 7 -0.5767 4.4458 2.3579 19 7 -0.9280 3.2876 3.0631 20 6 -2.1237 3.1121 3.8913 21 1 -2.9426 3.7354 3.5317 22 6 -1.8163 3.3997 5.3861 23 6 -2.8533 2.5145 6.1101 24 8 -3.2623 1.4907 5.1954 25 6 -2.5438 1.6223 3.9586 26 6 0.0263 2.3600 2.8401 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8932 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 1.3615 1.8099 -1.9452 33 1 2.0920 3.1803 -1.0754 34 1 3.2784 3.5871 -4.5385 35 1 1.0862 4.9243 1.1165 36 1 -1.9748 4.4526 5.6193 37 1 -0.8011 3.0938 5.6392 38 1 -3.7145 3.1162 6.4007 39 1 -2.4031 2.0624 6.9939 40 1 -1.6627 0.9806 3.9629 41 1 -3.1903 1.3731 3.1172 42 1 0.0451 1.3569 3.2399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153228539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:20 Heat of formation + Delta-G solvation = -58.738690 kcal Electronic energy + Delta-G solvation = -26993.628357 eV Core-core repulsion = 23102.005909 eV Total energy + Delta-G solvation = -3891.622448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.62424 -40.31465 -38.16635 -37.61094 -36.73304 -34.98568 -34.65829 -31.92774 -31.52567 -31.34304 -29.58752 -28.44382 -24.93888 -24.80088 -23.39262 -23.29776 -22.68468 -21.51544 -19.97217 -19.23384 -18.42505 -18.23453 -17.75683 -17.22698 -17.09039 -16.35554 -16.30397 -16.16228 -15.84386 -15.43064 -15.16100 -14.76357 -14.70739 -14.59604 -14.14111 -13.78108 -13.64179 -13.52519 -13.30067 -13.14164 -12.93896 -12.92030 -12.77725 -12.69756 -12.64851 -12.63355 -12.17269 -12.13319 -12.10156 -11.80606 -11.65536 -11.55227 -10.73990 -10.68647 -10.54753 -10.34150 -9.70490 -8.14913 -6.25817 -0.39767 0.38324 1.08668 1.13626 1.41925 1.44792 1.56201 2.31590 2.46589 2.63293 2.96427 3.15850 3.16835 3.21011 3.32568 3.61640 3.69352 3.77092 3.88890 4.05199 4.07993 4.28629 4.36589 4.50393 4.51106 4.54182 4.57112 4.71915 4.74526 4.76727 4.88579 5.08519 5.18468 5.21248 5.25464 5.45105 5.58822 5.62111 5.78245 5.78576 6.02134 6.17439 6.23167 6.83139 7.42649 8.92741 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.003368 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.470024 B = 8311.831804 C = 8497.824721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.988 5.988 4 C 0.274 3.726 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.272 1.272 12 H -0.281 1.281 13 S 2.725 3.275 14 O -0.992 6.992 15 O -0.988 6.988 16 C -0.815 4.815 17 C 0.126 3.874 18 N -0.303 5.303 19 N -0.345 5.345 20 C 0.111 3.889 21 H 0.134 0.866 22 C -0.164 4.164 23 C 0.053 3.947 24 O -0.386 6.386 25 C 0.045 3.955 26 C 0.182 3.818 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.027 0.973 33 H 0.018 0.982 34 H 0.266 0.734 35 H 0.197 0.803 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -3.784 17.642 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.827 5.827 4 C 0.150 3.850 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.207 1.207 13 S 2.816 3.184 14 O -0.982 6.982 15 O -0.979 6.979 16 C -0.916 4.916 17 C -0.063 4.063 18 N -0.122 5.122 19 N -0.123 5.123 20 C 0.009 3.991 21 H 0.151 0.849 22 C -0.202 4.202 23 C -0.024 4.024 24 O -0.305 6.305 25 C -0.033 4.033 26 C 0.028 3.972 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.214 0.786 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.964 -2.978 18.274 23.806 hybrid contribution 1.170 0.173 -1.120 1.628 sum -13.794 -2.805 17.154 22.190 Atomic orbital electron populations 1.22196 0.94900 1.03376 1.01798 1.21444 0.95142 0.81284 1.03998 1.57308 1.81883 1.22429 1.21068 1.18580 0.95703 0.90537 0.80186 1.21890 1.03266 1.27361 1.05815 0.92732 1.25718 1.00689 0.94818 0.97516 1.70022 1.37648 1.31230 1.17621 0.85562 0.79883 0.78162 0.78439 1.19234 1.19758 1.20693 1.00507 0.73507 0.72401 0.71981 1.93524 1.61269 1.59344 1.84084 1.93451 1.84107 1.57041 1.63269 1.31619 1.27472 1.08583 1.23890 1.23717 0.92279 0.94315 0.95966 1.77392 1.16019 1.06063 1.12733 1.49129 1.18177 1.09074 1.35893 1.23454 0.84714 1.00395 0.90489 0.84870 1.23594 1.01457 1.03481 0.91692 1.23276 0.97682 0.88691 0.92712 1.88498 1.64340 1.53067 1.24551 1.23797 0.98654 0.92085 0.88721 1.22758 0.85778 0.96680 0.91989 0.88984 0.92403 0.93525 0.90528 0.88838 0.95526 0.96391 0.92524 0.78590 0.87679 0.89878 0.88773 0.89273 0.89936 0.86780 0.76251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.33 16 2 C 0.11 3.42 6.40 86.38 0.55 3.97 16 3 N -0.99 -39.95 2.77 -519.87 -1.44 -41.39 16 4 C 0.27 13.72 5.10 85.63 0.44 14.16 16 5 C -0.54 -30.56 9.38 25.60 0.24 -30.32 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.67 5.46 84.66 0.46 1.13 16 8 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 9 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 S 2.73 106.55 5.79 -56.49 -0.33 106.22 16 14 O -0.99 -47.90 16.84 -128.00 -2.16 -50.05 16 15 O -0.99 -37.98 16.40 -128.00 -2.10 -40.08 16 16 C -0.82 -25.61 6.17 21.99 0.14 -25.47 16 17 C 0.13 4.05 11.82 85.24 1.01 5.06 16 18 N -0.30 -8.79 12.58 -57.02 -0.72 -9.51 16 19 N -0.34 -7.71 3.68 -320.61 -1.18 -8.89 16 20 C 0.11 1.62 4.26 46.44 0.20 1.82 16 21 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 22 C -0.16 -1.87 6.72 31.85 0.21 -1.65 16 23 C 0.05 0.50 7.79 72.45 0.56 1.06 16 24 O -0.39 -5.43 11.36 -148.98 -1.69 -7.12 16 25 C 0.05 0.55 7.15 72.65 0.52 1.07 16 26 C 0.18 4.30 9.52 83.54 0.80 5.09 16 27 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.06 1.24 7.31 -2.39 -0.02 1.22 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 31 H 0.09 2.69 6.91 -2.39 -0.02 2.68 16 32 H 0.03 1.37 8.11 -2.38 -0.02 1.35 16 33 H 0.02 0.97 7.61 -2.39 -0.02 0.96 16 34 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.20 6.22 8.06 -2.91 -0.02 6.19 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.03 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.08 0.88 6.21 -2.39 -0.01 0.87 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.22 3.57 6.75 -2.91 -0.02 3.55 16 Total: -1.00 -74.87 363.89 -0.41 -75.28 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.02 Total: 10.27 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 5.86 Total: -27.42 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.05 Total: -113.76 kcal Atomic # 8 Polarization: -91.31 SS G_CDS: -5.95 Total: -97.26 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 106.55 SS G_CDS: -0.33 Total: 106.22 kcal Total: -74.87 -0.41 -75.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153228539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.544 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds