Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00596 * 2 1 4 4 H 1.48498 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46923 * 299.99700 * 3 2 1 6 6 H 1.48503 * 109.46973 * 59.99288 * 3 2 1 7 7 C 1.37877 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00298 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00338 * 0.02562 * 7 2 1 10 10 O 1.42905 * 113.40648 * 46.80035 * 9 7 2 11 11 C 1.53489 * 114.20878 * 180.02562 * 9 7 2 12 12 N 1.47069 * 87.98724 * 139.65778 * 11 9 7 13 13 C 1.34772 * 136.06083 * 152.84271 * 12 11 9 14 14 O 1.21593 * 119.99554 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00396 * 179.97438 * 13 12 11 16 16 C 1.40067 * 120.00362 * 185.30349 * 15 13 12 17 17 C 1.39360 * 120.42446 * 32.84454 * 16 15 13 18 18 C 1.38331 * 118.42763 * 180.26685 * 17 16 15 19 19 C 1.38961 * 119.17939 * 359.46160 * 18 17 16 20 20 N 1.39918 * 119.61323 * 180.30001 * 19 18 17 21 21 C 1.35813 * 126.10404 * 179.97438 * 20 19 18 22 22 C 1.35303 * 107.61645 * 179.97438 * 21 20 19 23 23 C 1.39932 * 107.96812 * 0.02562 * 22 21 20 24 24 N 1.30831 * 108.36552 * 359.73388 * 23 22 21 25 25 N 1.32281 * 120.77134 * 0.27445 * 19 18 17 26 26 C 1.31853 * 121.72501 * 0.02562 * 25 19 18 27 27 C 1.47068 * 87.88157 * 333.09981 * 12 11 9 28 28 H 0.96998 * 119.99406 * 0.02562 * 1 2 3 29 29 H 0.96692 * 114.00448 * 313.19609 * 10 9 7 30 30 H 1.09000 * 113.46871 * 24.87557 * 11 9 7 31 31 H 1.09000 * 113.47060 * 254.44355 * 11 9 7 32 32 H 0.97008 * 119.99531 * 5.30077 * 15 13 12 33 33 H 1.07998 * 120.78809 * 0.02562 * 17 16 15 34 34 H 1.08000 * 120.41263 * 179.73422 * 18 17 16 35 35 H 1.07998 * 126.19063 * 0.02562 * 21 20 19 36 36 H 1.07998 * 126.01693 * 179.97438 * 22 21 20 37 37 H 1.08002 * 125.81360 * 180.02562 * 23 22 21 38 38 H 1.08002 * 119.62923 * 180.02562 * 26 25 19 39 39 H 1.09001 * 113.46588 * 141.67673 * 27 12 11 40 40 H 1.08992 * 113.47099 * 272.11832 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8907 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.1899 -2.5422 -0.9559 11 6 2.1485 -3.7443 0.0018 12 7 1.2088 -4.3571 0.9528 13 6 0.8331 -5.6108 1.2745 14 8 1.3290 -6.5605 0.6994 15 7 -0.0914 -5.8119 2.2342 16 6 -0.4011 -7.1142 2.6465 17 6 0.5789 -8.1050 2.6507 18 6 0.2263 -9.3783 3.0605 19 6 -1.0812 -9.6230 3.4622 20 7 -1.4462 -10.9060 3.8844 21 6 -2.6798 -11.2901 4.3030 22 6 -2.6140 -12.6037 4.6203 23 6 -1.3038 -13.0381 4.3908 24 7 -0.6057 -12.0252 3.9456 25 7 -1.9848 -8.6569 3.4506 26 6 -1.6864 -7.4331 3.0609 27 6 0.8548 -2.9995 1.3938 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3737 -1.7565 -0.9537 30 1 3.1378 -3.5658 0.4231 31 1 2.1856 -4.2537 -0.9612 32 1 -0.5423 -5.0547 2.6396 33 1 1.5889 -7.8849 2.3378 34 1 0.9593 -10.1714 3.0722 35 1 -3.5551 -10.6610 4.3696 36 1 -3.4290 -13.2101 4.9871 37 1 -0.9333 -14.0402 4.5493 38 1 -2.4507 -6.6701 3.0654 39 1 -0.2061 -2.8768 1.6120 40 1 1.4959 -2.6205 2.1895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170609688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = 100.814610 kcal Electronic energy + Delta-G solvation = -26514.668110 eV Core-core repulsion = 22526.813213 eV Total energy + Delta-G solvation = -3987.854898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71357 -40.69048 -39.62343 -38.00282 -35.11001 -34.16597 -32.95939 -32.44348 -32.28995 -30.42762 -29.47306 -27.98390 -25.49490 -25.26413 -24.28708 -23.67435 -21.49075 -21.04094 -20.56646 -19.20859 -18.56606 -18.00834 -17.55174 -16.95679 -16.32047 -15.69773 -15.51898 -15.37011 -15.04277 -14.98863 -14.41968 -14.20820 -13.92400 -13.82610 -13.51469 -13.22055 -13.01622 -12.91968 -12.78462 -12.72007 -12.15249 -11.66578 -11.20364 -11.17081 -11.09162 -11.07396 -10.56477 -10.38642 -10.33318 -10.10736 -9.95703 -9.60791 -9.40459 -9.17072 -8.89308 -8.56427 -8.15592 -7.81168 -6.50696 -4.61078 0.53132 1.03549 1.89262 1.94568 2.54477 2.66961 3.07026 3.17421 3.20777 3.33805 3.73274 4.01986 4.10089 4.15450 4.33850 4.65510 4.71496 4.73641 4.85048 4.99330 5.22114 5.42077 5.43367 5.48587 5.63646 5.70616 5.74327 5.90436 6.01802 6.09233 6.22928 6.28430 6.31352 6.40156 6.52130 6.61097 6.91773 6.95780 7.17305 7.32060 7.53341 7.69122 7.70745 8.38312 8.43925 8.77349 9.10927 9.38036 10.56206 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.041105 B = 0.002078 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.017292 B =13469.296117 C =13790.791224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.129 3.871 12 N -0.649 5.649 13 C 0.729 3.271 14 O -0.590 6.590 15 N -0.680 5.680 16 C 0.129 3.871 17 C -0.060 4.060 18 C -0.136 4.136 19 C 0.332 3.668 20 N -0.318 5.318 21 C 0.079 3.921 22 C -0.272 4.272 23 C 0.058 3.942 24 N -0.286 5.286 25 N -0.483 5.483 26 C 0.100 3.900 27 C 0.070 3.930 28 H 0.274 0.726 29 H 0.394 0.606 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.411 0.589 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.191 0.809 38 H 0.170 0.830 39 H 0.063 0.937 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 -14.636 10.099 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.199 3.801 10 O -0.384 6.384 11 C 0.006 3.994 12 N -0.385 5.385 13 C 0.433 3.567 14 O -0.469 6.469 15 N -0.327 5.327 16 C 0.030 3.970 17 C -0.089 4.089 18 C -0.158 4.158 19 C 0.104 3.896 20 N -0.095 5.095 21 C -0.064 4.064 22 C -0.301 4.301 23 C -0.130 4.130 24 N -0.105 5.105 25 N -0.195 5.195 26 C -0.062 4.062 27 C -0.053 4.053 28 H 0.085 0.915 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.247 0.753 33 H 0.176 0.824 34 H 0.167 0.833 35 H 0.198 0.802 36 H 0.172 0.828 37 H 0.208 0.792 38 H 0.187 0.813 39 H 0.081 0.919 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.815 -15.583 9.389 18.588 hybrid contribution -0.268 1.678 0.494 1.770 sum -4.083 -13.904 9.883 17.541 Atomic orbital electron populations 1.69263 1.06227 1.28234 1.50120 1.25089 0.95050 1.00039 0.92917 0.86238 0.80089 0.82059 0.77923 1.19354 1.20567 1.20653 1.21448 0.94010 0.89571 1.52102 0.90745 1.19493 0.85481 0.91080 0.84093 1.86057 1.44953 1.48337 1.59071 1.23288 0.93276 0.91310 0.91519 1.48830 1.44268 1.03032 1.42359 1.15217 0.79655 0.82417 0.79448 1.90884 1.59747 1.40065 1.56198 1.42534 1.43475 1.06091 1.40642 1.18564 0.93931 0.85955 0.98598 1.21639 1.00790 0.91117 0.95323 1.21501 0.95412 0.98212 1.00699 1.17586 0.90484 0.82636 0.98901 1.45741 1.07952 1.06226 1.49613 1.22914 0.89708 0.96387 0.97370 1.21622 0.98792 0.95070 1.14576 1.24109 0.92942 0.98559 0.97431 1.77463 1.17115 0.92053 1.23888 1.66735 1.35182 1.00177 1.17427 1.22218 0.93389 0.92016 0.98566 1.24227 1.00300 0.77641 1.03141 0.91549 0.74898 0.89490 0.91312 0.75289 0.82436 0.83289 0.80154 0.82823 0.79212 0.81337 0.91894 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.61 11.01 55.43 0.61 -21.00 16 2 C 0.07 1.69 5.40 -17.82 -0.10 1.60 16 3 Si 0.91 18.57 29.54 -169.99 -5.02 13.54 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.53 -12.58 8.69 -34.44 -0.30 -12.88 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 5.41 1.57 -91.39 -0.14 5.26 16 10 O -0.57 -14.05 13.53 -35.23 -0.48 -14.52 16 11 C 0.13 2.62 8.04 -8.52 -0.07 2.56 16 12 N -0.65 -12.67 3.69 -191.20 -0.71 -13.38 16 13 C 0.73 13.86 8.56 -86.93 -0.74 13.12 16 14 O -0.59 -12.77 14.82 5.28 0.08 -12.70 16 15 N -0.68 -10.11 5.36 -14.10 -0.08 -10.19 16 16 C 0.13 1.82 6.31 -83.48 -0.53 1.30 16 17 C -0.06 -0.88 8.76 -39.13 -0.34 -1.22 16 18 C -0.14 -1.86 9.69 -39.28 -0.38 -2.24 16 19 C 0.33 4.62 7.55 -154.29 -1.17 3.45 16 20 N -0.32 -4.17 3.81 -12.08 -0.05 -4.22 16 21 C 0.08 0.84 11.10 -16.84 -0.19 0.65 16 22 C -0.27 -2.39 10.80 -39.99 -0.43 -2.83 16 23 C 0.06 0.54 12.02 -17.34 -0.21 0.33 16 24 N -0.29 -3.62 11.83 30.64 0.36 -3.26 16 25 N -0.48 -6.40 9.85 -12.12 -0.12 -6.52 16 26 C 0.10 1.22 11.11 -17.35 -0.19 1.03 16 27 C 0.07 1.36 7.69 -8.65 -0.07 1.29 16 28 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 29 H 0.39 9.82 6.33 45.56 0.29 10.10 16 30 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.41 5.13 8.54 -40.82 -0.35 4.78 16 33 H 0.16 2.46 6.48 -52.49 -0.34 2.12 16 34 H 0.15 1.91 7.68 -52.49 -0.40 1.50 16 35 H 0.18 1.57 8.05 -52.49 -0.42 1.15 16 36 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -29.36 351.92 -8.67 -38.03 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -3.73 Total: 17.48 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -4.85 Total: 11.42 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.03 Total: -58.57 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.40 Total: -27.22 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.36 -8.67 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170609688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.848 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds