Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48499 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46972 * 299.99977 * 3 2 1 6 6 H 1.48497 * 109.47084 * 59.99573 * 3 2 1 7 7 C 1.38808 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00090 * 179.97438 * 9 7 2 11 11 H 1.08990 * 109.46872 * 35.00016 * 10 9 7 12 12 C 1.50701 * 109.46997 * 155.00068 * 10 9 7 13 13 C 1.38255 * 119.99820 * 40.00139 * 12 10 9 14 14 C 1.38220 * 119.99681 * 179.97438 * 13 12 10 15 15 C 1.38254 * 120.00044 * 0.09566 * 14 13 12 16 16 C 1.38204 * 119.99840 * 359.86143 * 15 14 13 17 17 C 1.50708 * 119.99830 * 180.02562 * 16 15 14 18 18 F 1.39900 * 109.46638 * 270.01892 * 17 16 15 19 19 F 1.39901 * 109.47089 * 30.01723 * 17 16 15 20 20 F 1.39901 * 109.47228 * 150.02200 * 17 16 15 21 21 C 1.38207 * 119.99822 * 219.97902 * 12 10 9 22 22 C 1.53002 * 109.47058 * 275.00205 * 10 9 7 23 23 C 1.53176 * 109.54225 * 179.55819 * 22 10 9 24 24 C 1.53090 * 109.16291 * 183.15198 * 23 22 10 25 25 O 1.42905 * 109.41291 * 57.60823 * 24 23 22 26 26 C 1.42897 * 114.09644 * 298.83895 * 25 24 23 27 27 C 1.53091 * 109.41543 * 61.16319 * 26 25 24 28 28 H 0.96995 * 119.99796 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00083 * 359.97438 * 9 7 2 30 30 H 1.08000 * 120.00604 * 359.70329 * 13 12 10 31 31 H 1.08002 * 119.99604 * 180.02562 * 14 13 12 32 32 H 1.07997 * 119.99709 * 179.97438 * 15 14 13 33 33 H 1.07991 * 120.00421 * 0.02562 * 21 12 10 34 34 H 1.08997 * 109.53967 * 299.82083 * 22 10 9 35 35 H 1.08997 * 109.51994 * 303.05595 * 23 22 10 36 36 H 1.09002 * 109.52415 * 63.24122 * 23 22 10 37 37 H 1.09000 * 109.47984 * 297.62242 * 24 23 22 38 38 H 1.09002 * 109.47983 * 177.59022 * 24 23 22 39 39 H 1.09000 * 109.48529 * 301.17863 * 26 25 24 40 40 H 1.09006 * 109.48194 * 181.14389 * 26 25 24 41 41 H 1.09004 * 109.52119 * 182.48736 * 27 26 25 42 42 H 1.08996 * 109.57611 * 62.32820 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1942 -4.7357 0.6010 13 6 -0.1561 -4.7828 0.3081 14 6 -0.9485 -5.7727 0.8584 15 6 -0.3911 -6.7144 1.7033 16 6 0.9590 -6.6677 1.9954 17 6 1.5667 -7.6946 2.9159 18 9 1.5036 -7.2335 4.2352 19 9 0.8578 -8.8959 2.8073 20 9 2.9027 -7.9076 2.5598 21 6 1.7518 -5.6782 1.4441 22 6 2.4222 -4.0356 -1.4365 23 6 3.1978 -5.3564 -1.4374 24 6 3.6255 -5.6870 -2.8697 25 8 4.4131 -4.6140 -3.3899 26 6 3.7242 -3.3639 -3.4571 27 6 3.3005 -2.9400 -2.0484 28 1 -0.4849 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 -0.5928 -4.0437 -0.3473 31 1 -2.0032 -5.8098 0.6292 32 1 -1.0103 -7.4876 2.1336 33 1 2.8066 -5.6414 1.6730 34 1 1.5121 -4.1452 -2.0262 35 1 4.0813 -5.2604 -0.8065 36 1 2.5604 -6.1534 -1.0544 37 1 2.7404 -5.8228 -3.4912 38 1 4.2146 -6.6041 -2.8707 39 1 2.8404 -3.4692 -4.0863 40 1 4.3844 -2.6073 -3.8812 41 1 2.7364 -2.0088 -2.1025 42 1 4.1855 -2.7943 -1.4291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253416663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -171.232529 kcal Electronic energy + Delta-G solvation = -29117.953230 eV Core-core repulsion = 24647.692335 eV Total energy + Delta-G solvation = -4470.260895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.15366 -47.68039 -47.60830 -39.88035 -38.68965 -35.93493 -33.05007 -31.98402 -31.33310 -30.78707 -29.83823 -26.40348 -25.98431 -23.88892 -23.14245 -22.59472 -22.22208 -20.47493 -19.54384 -18.48244 -18.34136 -17.99174 -17.19153 -16.12692 -15.88087 -15.69905 -15.20670 -14.73139 -14.62984 -14.48347 -14.37211 -14.22862 -14.08781 -13.88169 -13.82093 -13.78463 -13.58243 -13.22011 -13.12266 -12.78732 -12.53118 -12.22345 -11.99525 -11.86592 -11.24998 -11.05082 -10.98516 -10.92787 -10.88130 -10.56280 -10.20966 -10.14301 -9.85602 -9.68535 -9.22950 -9.07197 -9.01899 -8.59624 -7.11146 -5.89632 -3.18392 1.08513 1.39314 2.68370 3.35780 3.42908 3.44391 3.63415 3.74757 4.04561 4.16623 4.45094 4.48665 4.86620 4.92922 5.06324 5.13541 5.26888 5.33424 5.38946 5.41479 5.47016 5.53393 5.62485 5.68922 5.79451 5.85122 5.90828 5.98679 6.04652 6.14904 6.21984 6.26809 6.34245 6.42549 6.45304 6.60929 6.70320 6.91777 6.99516 7.00717 7.50498 7.60741 8.27887 9.40121 9.92772 10.28287 11.32644 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.004407 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.038114 B = 6352.283928 C = 7922.321717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.218 3.782 11 H 0.059 0.941 12 C -0.064 4.064 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.085 4.085 16 C -0.187 4.187 17 C 0.509 3.491 18 F -0.179 7.179 19 F -0.181 7.181 20 F -0.179 7.179 21 C -0.069 4.069 22 C -0.097 4.097 23 C -0.152 4.152 24 C 0.064 3.936 25 O -0.391 6.391 26 C 0.059 3.941 27 C -0.142 4.142 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 -15.124 -0.271 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.108 3.892 11 H 0.077 0.923 12 C -0.065 4.065 13 C -0.091 4.091 14 C -0.138 4.138 15 C -0.104 4.104 16 C -0.189 4.189 17 C 0.455 3.545 18 F -0.160 7.160 19 F -0.163 7.163 20 F -0.160 7.160 21 C -0.088 4.088 22 C -0.118 4.118 23 C -0.191 4.191 24 C -0.012 4.012 25 O -0.310 6.310 26 C -0.017 4.017 27 C -0.180 4.180 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.680 -14.990 -0.284 15.086 hybrid contribution -0.150 0.793 0.374 0.890 sum 1.529 -14.196 0.090 14.279 Atomic orbital electron populations 1.69659 1.05137 1.25761 1.57198 1.24730 0.95469 0.97669 1.02699 0.86174 0.78945 0.84175 0.77268 1.20397 1.21806 1.21847 1.19253 0.91158 0.83627 1.42837 0.90717 1.42497 1.05744 0.99288 1.88342 1.19233 0.93183 0.84295 0.92517 0.92272 1.20395 0.94856 0.95659 0.95617 1.21355 0.93378 0.96696 0.97660 1.21122 1.00220 0.94901 0.97551 1.20795 0.92880 0.99066 0.97624 1.19840 0.96167 0.99197 1.03675 1.18382 0.75969 0.80606 0.79546 1.93220 1.96112 1.88657 1.38018 1.93165 1.78498 1.48565 1.96039 1.93182 1.35823 1.95255 1.91735 1.20792 0.99786 0.92804 0.95384 1.21863 0.97670 0.93281 0.99026 1.22287 1.00754 0.98685 0.97335 1.22492 0.95114 0.89861 0.93778 1.87859 1.40288 1.18390 1.84492 1.22687 0.96422 0.85154 0.97465 1.22231 1.00051 1.00835 0.94849 0.93431 0.78002 0.84637 0.85153 0.85370 0.85091 0.91773 0.91405 0.91482 0.93806 0.89751 0.93793 0.89499 0.87824 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.21 13.06 55.49 0.72 -25.49 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -5.93 7.64 -15.06 -0.12 -6.04 16 8 H 0.07 1.83 7.41 -52.49 -0.39 1.44 16 9 N -0.72 -15.93 4.96 -54.55 -0.27 -16.20 16 10 C 0.22 3.89 2.23 -69.08 -0.15 3.73 16 11 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 12 C -0.06 -1.01 4.08 -104.63 -0.43 -1.44 16 13 C -0.07 -1.08 9.06 -39.58 -0.36 -1.44 16 14 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 15 C -0.09 -1.05 9.40 -39.59 -0.37 -1.42 16 16 C -0.19 -2.51 5.45 -104.62 -0.57 -3.08 16 17 C 0.51 6.50 3.36 36.01 0.12 6.62 16 18 F -0.18 -2.42 17.30 2.25 0.04 -2.38 16 19 F -0.18 -2.21 16.46 2.25 0.04 -2.17 16 20 F -0.18 -2.30 16.46 2.25 0.04 -2.27 16 21 C -0.07 -0.99 8.16 -39.58 -0.32 -1.31 16 22 C -0.10 -1.55 2.03 -90.44 -0.18 -1.74 16 23 C -0.15 -2.10 4.93 -26.59 -0.13 -2.23 16 24 C 0.06 0.85 6.84 37.20 0.25 1.11 16 25 O -0.39 -6.04 10.77 -35.23 -0.38 -6.42 16 26 C 0.06 0.89 6.84 37.20 0.25 1.14 16 27 C -0.14 -2.42 4.36 -26.59 -0.12 -2.53 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.38 9.08 6.06 -40.82 -0.25 8.84 16 30 H 0.14 2.12 6.91 -52.49 -0.36 1.76 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.30 7.60 -52.49 -0.40 0.91 16 33 H 0.13 1.76 7.58 -52.49 -0.40 1.37 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.87 6.88 -51.93 -0.36 0.52 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.10 2.05 6.28 -51.93 -0.33 1.73 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -27.47 349.84 -7.59 -35.05 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.41 Total: 9.31 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.61 Total: -10.88 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.45 Total: -41.69 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.38 Total: -6.42 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.47 -7.59 -35.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253416663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.180 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds