Wall clock time and date at job start Tue Mar 31 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47397 * 2 1 4 4 C 1.36872 * 119.99989 * 262.82910 * 3 2 1 5 5 H 1.08003 * 119.99855 * 191.10080 * 4 3 2 6 6 C 1.39014 * 120.00191 * 11.09933 * 4 3 2 7 7 N 1.31394 * 119.99943 * 23.79789 * 6 4 3 8 8 Si 1.86797 * 120.00353 * 203.79500 * 6 4 3 9 9 H 1.48496 * 109.47152 * 90.00024 * 8 6 4 10 10 H 1.48496 * 109.47306 * 210.00455 * 8 6 4 11 11 H 1.48505 * 109.46838 * 330.00334 * 8 6 4 12 12 C 1.34775 * 119.99861 * 82.82707 * 3 2 1 13 13 O 1.21741 * 119.99487 * 184.29570 * 12 3 2 14 14 C 1.46548 * 120.00142 * 4.29211 * 12 3 2 15 15 C 1.37994 * 126.24080 * 346.49369 * 14 12 3 16 16 C 1.39805 * 107.08644 * 180.26145 * 15 14 12 17 17 S 1.76199 * 126.06127 * 179.73481 * 16 15 14 18 18 O 1.42098 * 106.39848 * 203.54175 * 17 16 15 19 19 O 1.42096 * 106.40395 * 336.46189 * 17 16 15 20 20 N 1.65601 * 107.21506 * 90.00303 * 17 16 15 21 21 C 1.46505 * 119.99995 * 89.99679 * 20 17 16 22 22 C 1.46495 * 120.00253 * 270.00086 * 20 17 16 23 23 C 1.35487 * 107.87419 * 359.57366 * 16 15 14 24 24 N 1.35589 * 108.88477 * 0.43063 * 23 16 15 25 25 C 1.46498 * 125.68440 * 179.72300 * 24 23 16 26 26 H 1.08994 * 109.47089 * 67.19887 * 1 2 3 27 27 H 1.08995 * 109.46794 * 187.20710 * 1 2 3 28 28 H 1.09006 * 109.46904 * 307.20561 * 1 2 3 29 29 H 1.09001 * 109.47141 * 240.00144 * 2 1 3 30 30 H 1.09000 * 109.47699 * 120.00132 * 2 1 3 31 31 H 0.97000 * 120.00161 * 179.97438 * 7 6 4 32 32 H 1.08008 * 126.45760 * 359.97438 * 15 14 12 33 33 H 1.09001 * 109.46786 * 89.99532 * 21 20 17 34 34 H 1.08995 * 109.47177 * 209.99975 * 21 20 17 35 35 H 1.09001 * 109.46904 * 330.00478 * 21 20 17 36 36 H 1.08996 * 109.47543 * 59.99622 * 22 20 17 37 37 H 1.08998 * 109.47239 * 180.02562 * 22 20 17 38 38 H 1.09004 * 109.46581 * 300.00094 * 22 20 17 39 39 H 1.08003 * 125.55751 * 180.14013 * 23 16 15 40 40 H 1.08996 * 109.47272 * 268.86207 * 25 24 23 41 41 H 1.08999 * 109.46774 * 28.86343 * 25 24 23 42 42 H 1.09000 * 109.47228 * 148.85818 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3861 1.9771 -1.1761 5 1 2.9106 2.9211 -1.1623 6 6 2.0845 1.3672 -2.3883 7 7 1.0874 0.5149 -2.4648 8 14 3.0965 1.7594 -3.9086 9 1 4.2379 0.8140 -4.0008 10 1 2.2450 1.6269 -5.1179 11 1 3.6113 3.1493 -3.8155 12 6 2.1057 2.0651 1.1581 13 8 2.4366 3.2366 1.1496 14 6 1.8021 1.3985 2.4274 15 6 1.1735 0.1794 2.5787 16 6 1.0839 -0.0689 3.9516 17 16 0.3609 -1.4889 4.7037 18 8 -0.0113 -1.1004 6.0190 19 8 -0.5600 -2.0180 3.7597 20 7 1.5599 -2.6187 4.8714 21 6 2.3688 -2.6528 6.0925 22 6 1.8118 -3.5842 3.7988 23 6 1.6548 0.9741 4.6010 24 7 2.0920 1.8744 3.6862 25 6 2.7611 3.1424 3.9873 26 1 -0.3633 0.3982 -0.9473 27 1 -0.3633 -1.0195 0.1289 28 1 -0.3633 0.6214 0.8186 29 1 1.8934 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 0.8766 0.0897 -3.3108 32 1 0.8139 -0.4600 1.7860 33 1 1.8973 -3.3109 6.8223 34 1 3.3657 -3.0256 5.8576 35 1 2.4449 -1.6471 6.5059 36 1 2.0777 -3.0518 2.8857 37 1 2.6311 -4.2426 4.0876 38 1 0.9137 -4.1770 3.6254 39 1 1.7428 1.0745 5.6727 40 1 2.0172 3.9345 4.0727 41 1 3.3050 3.0519 4.9275 42 1 3.4590 3.3842 3.1857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272408060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:09 Heat of formation + Delta-G solvation = -10.419984 kcal Electronic energy + Delta-G solvation = -27629.353116 eV Core-core repulsion = 23739.825924 eV Total energy + Delta-G solvation = -3889.527192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12426 -38.20669 -36.98031 -36.12106 -35.57150 -35.37627 -32.95981 -31.84719 -29.98806 -28.81299 -28.14729 -26.42491 -25.16245 -24.66441 -22.53301 -21.46292 -21.22882 -19.40008 -18.46448 -17.26308 -17.22828 -16.67558 -16.07734 -15.71520 -15.46944 -15.19511 -14.64572 -14.34300 -14.29198 -14.13431 -13.82362 -13.61000 -13.19195 -12.95931 -12.69574 -12.55924 -12.33388 -12.21791 -12.21363 -11.92202 -11.82564 -11.63665 -11.51544 -11.45664 -11.19574 -11.00494 -10.92079 -10.75892 -10.43102 -10.23171 -9.90280 -9.14942 -9.04426 -8.84785 -8.59895 -7.92920 -7.84553 -6.49185 -3.90931 0.67113 1.95629 2.39981 2.98410 3.11293 3.18690 3.23353 3.32096 4.00991 4.04609 4.18408 4.50543 4.73928 4.74399 4.98513 5.01429 5.03873 5.22879 5.29919 5.44489 5.54919 5.55919 5.59166 5.62577 5.76280 5.80275 5.89451 6.07025 6.15937 6.17721 6.51819 6.53913 6.60498 6.80271 6.93357 7.16603 7.21276 7.35228 7.42119 7.74681 7.95556 8.37709 9.02588 9.26042 9.84362 10.48447 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.004267 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.289747 B = 6560.152437 C = 7508.927521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.408 5.408 4 C -0.305 4.305 5 H 0.107 0.893 6 C 0.033 3.967 7 N -0.853 5.853 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.488 3.512 13 O -0.605 6.605 14 C 0.000 4.000 15 C -0.111 4.111 16 C -0.753 4.753 17 S 2.722 3.278 18 O -0.971 6.971 19 O -0.957 6.957 20 N -1.010 6.010 21 C 0.096 3.904 22 C 0.091 3.909 23 C 0.105 3.895 24 N -0.404 5.404 25 C 0.069 3.931 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.272 0.728 32 H 0.186 0.814 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.176 0.824 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.772 -7.714 13.131 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.027 4.027 3 N -0.123 5.123 4 C -0.433 4.433 5 H 0.125 0.875 6 C -0.172 4.172 7 N -0.490 5.490 8 Si 0.752 3.248 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.278 3.722 13 O -0.493 6.493 14 C -0.114 4.114 15 C -0.135 4.135 16 C -0.849 4.849 17 S 2.813 3.187 18 O -0.961 6.961 19 O -0.947 6.947 20 N -0.849 5.849 21 C -0.049 4.049 22 C -0.055 4.055 23 C -0.038 4.038 24 N -0.075 5.075 25 C -0.072 4.072 26 H 0.119 0.881 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.203 0.797 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.193 0.807 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.191 -7.043 13.187 15.286 hybrid contribution 0.946 0.554 -0.954 1.453 sum 4.137 -6.489 12.233 14.452 Atomic orbital electron populations 1.22347 0.95932 1.00068 1.04037 1.22095 0.95086 0.83642 1.01875 1.43521 1.52576 1.11073 1.05118 1.19787 1.33918 1.07818 0.81746 0.87484 1.25327 0.95681 0.96903 0.99260 1.70065 1.23264 1.28665 1.27044 0.85924 0.79596 0.79287 0.79953 1.20192 1.20845 1.19304 1.16530 0.87407 0.86095 0.82214 1.90610 1.56108 1.15857 1.86769 1.20887 1.08018 0.96508 0.85945 1.22265 1.00617 0.96532 0.94104 1.30780 1.27962 1.20973 1.05200 1.00900 0.72497 0.72379 0.72941 1.93525 1.80987 1.83543 1.38086 1.93553 1.58880 1.78463 1.63813 1.57427 1.54798 1.47342 1.25295 1.21461 0.95434 1.02571 0.85464 1.21542 1.02328 0.92395 0.89215 1.21559 0.98234 0.89116 0.94860 1.44213 1.41437 1.16286 1.05565 1.22253 0.98756 0.83085 1.03082 0.88108 0.93478 0.94450 0.88192 0.92518 0.91790 0.79738 0.92549 0.91127 0.91210 0.91776 0.90459 0.91457 0.80677 0.90356 0.90303 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 8.16 37.16 0.30 -3.29 16 2 C 0.10 2.13 4.79 -4.04 -0.02 2.12 16 3 N -0.41 -10.32 2.64 -116.34 -0.31 -10.63 16 4 C -0.30 -8.16 9.39 -15.01 -0.14 -8.30 16 5 H 0.11 3.01 7.34 -52.48 -0.39 2.63 16 6 C 0.03 0.83 4.89 -17.45 -0.09 0.74 16 7 N -0.85 -20.97 8.53 55.50 0.47 -20.49 16 8 Si 0.93 19.54 29.61 -169.99 -5.03 14.51 16 9 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.49 12.19 7.44 -12.91 -0.10 12.09 16 13 O -0.60 -16.41 14.59 5.15 0.08 -16.34 16 14 C 0.00 -0.01 6.68 -81.98 -0.55 -0.56 16 15 C -0.11 -2.14 7.28 -39.09 -0.28 -2.42 16 16 C -0.75 -12.42 6.17 -39.98 -0.25 -12.66 16 17 S 2.72 40.58 5.79 -107.50 -0.62 39.96 16 18 O -0.97 -15.64 16.92 -57.17 -0.97 -16.60 16 19 O -0.96 -16.96 17.03 -57.17 -0.97 -17.94 16 20 N -1.01 -11.49 3.58 -129.21 -0.46 -11.95 16 21 C 0.10 0.82 10.26 59.85 0.61 1.44 16 22 C 0.09 0.89 10.30 59.84 0.62 1.51 16 23 C 0.10 1.58 11.13 -16.87 -0.19 1.40 16 24 N -0.40 -7.05 3.16 -120.22 -0.38 -7.43 16 25 C 0.07 0.99 10.43 59.85 0.62 1.61 16 26 H 0.10 2.41 6.06 -51.93 -0.31 2.10 16 27 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 28 H 0.04 0.82 6.62 -51.93 -0.34 0.47 16 29 H 0.10 2.32 5.93 -51.93 -0.31 2.01 16 30 H 0.06 1.13 4.72 -51.93 -0.24 0.89 16 31 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 32 H 0.19 3.56 3.28 -52.48 -0.17 3.39 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.45 7.92 -51.93 -0.41 0.04 16 35 H 0.07 0.56 7.79 -51.93 -0.40 0.16 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.54 7.79 -51.93 -0.40 0.14 16 38 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 39 H 0.18 1.93 8.06 -52.48 -0.42 1.51 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.73 6.74 -51.93 -0.35 1.38 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -33.72 349.38 -7.81 -41.53 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.42 Total: 6.44 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 0.55 Total: -6.32 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.68 Total: -50.50 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -1.87 Total: -50.88 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Atomic # 16 Polarization: 40.58 SS G_CDS: -0.62 Total: 39.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.72 -7.81 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272408060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.111 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds