Wall clock time and date at job start Tue Mar 31 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35743 * 116.99696 * 2 1 4 4 C 1.38895 * 119.93290 * 0.27550 * 3 2 1 5 5 C 1.37739 * 120.16066 * 180.27824 * 4 3 2 6 6 C 1.39823 * 120.02687 * 359.72446 * 5 4 3 7 7 C 1.47500 * 120.06552 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00140 * 318.60430 * 7 6 5 9 9 N 1.34777 * 119.99757 * 138.59702 * 7 6 5 10 10 C 1.36908 * 119.99587 * 184.56023 * 9 7 6 11 11 H 1.08001 * 119.99964 * 224.25372 * 10 9 7 12 12 C 1.39018 * 119.99767 * 44.26394 * 10 9 7 13 13 N 1.31382 * 120.00297 * 10.00436 * 12 10 9 14 14 Si 1.86804 * 119.99992 * 190.00684 * 12 10 9 15 15 H 1.48502 * 109.47238 * 89.99613 * 14 12 10 16 16 H 1.48495 * 109.47290 * 209.99524 * 14 12 10 17 17 H 1.48504 * 109.46816 * 329.99998 * 14 12 10 18 18 C 1.46496 * 120.00597 * 4.56801 * 9 7 6 19 19 C 1.52994 * 117.50521 * 185.66744 * 18 9 7 20 20 C 1.52992 * 60.00151 * 252.50997 * 19 18 9 21 21 C 1.39719 * 119.86672 * 359.97438 * 6 5 4 22 22 C 1.38270 * 119.83982 * 0.02562 * 21 6 5 23 23 N 1.40360 * 120.01612 * 180.02562 * 22 21 6 24 24 C 1.35035 * 127.38398 * 0.02562 * 23 22 21 25 25 N 1.30759 * 107.27739 * 180.02562 * 24 23 22 26 26 N 1.28426 * 110.64007 * 0.02562 * 25 24 23 27 27 N 1.28949 * 110.19596 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47464 * 300.00182 * 1 2 3 30 30 H 1.09007 * 109.47560 * 59.99806 * 1 2 3 31 31 H 1.07995 * 119.92343 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.98792 * 179.70561 * 5 4 3 33 33 H 0.96997 * 120.00084 * 184.99808 * 13 12 10 34 34 H 1.09007 * 115.54582 * 331.38621 * 18 9 7 35 35 H 1.09003 * 117.49525 * 0.02562 * 19 18 9 36 36 H 1.09000 * 117.50317 * 145.01527 * 19 18 9 37 37 H 1.09000 * 117.49792 * 252.50564 * 20 19 18 38 38 H 1.09006 * 117.52044 * 107.47960 * 20 19 18 39 39 H 1.07998 * 120.08157 * 179.97438 * 21 6 5 40 40 H 1.07996 * 126.36339 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2873 2.3735 0.0058 5 6 1.9076 3.6032 0.0000 6 6 3.3036 3.6827 -0.0058 7 6 3.9688 4.9992 -0.0114 8 8 3.5350 5.8967 -0.7081 9 7 5.0572 5.2074 0.7556 10 6 5.6191 6.4541 0.8225 11 1 6.6916 6.5670 0.7638 12 6 4.8090 7.5748 0.9662 13 7 3.5309 7.4314 1.2344 14 14 5.5378 9.2844 0.7780 15 1 5.4468 9.7077 -0.6425 16 1 4.7841 10.2402 1.6286 17 1 6.9620 9.2643 1.1982 18 6 5.6393 4.0999 1.5176 19 6 6.7905 4.4263 2.4710 20 6 7.0666 3.6746 1.1674 21 6 4.0671 2.5126 -0.0053 22 6 3.4387 1.2810 0.0005 23 7 4.2021 0.1032 0.0016 24 6 5.5484 -0.0013 -0.0020 25 7 5.8390 -1.2761 0.0001 26 7 4.7679 -1.9846 0.0043 27 7 3.7289 -1.2209 0.0056 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2090 2.3142 0.0107 32 1 1.3156 4.5064 -0.0003 33 1 2.9512 8.2086 1.2630 34 1 4.9412 3.3190 1.8195 35 1 7.1146 5.4652 2.5316 36 1 6.8500 3.8604 3.4007 37 1 7.3078 2.6140 1.2394 38 1 7.5725 4.2186 0.3697 39 1 5.1456 2.5699 -0.0103 40 1 6.2540 0.8163 -0.0067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272816812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:45 Heat of formation + Delta-G solvation = 138.948387 kcal Electronic energy + Delta-G solvation = -28398.567187 eV Core-core repulsion = 24412.365894 eV Total energy + Delta-G solvation = -3986.201293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.10491 -40.47077 -39.00813 -37.28502 -36.30561 -34.89429 -32.99341 -32.21553 -31.40405 -30.34707 -30.00870 -27.56850 -25.40786 -24.94777 -23.72846 -22.48618 -22.00542 -21.90129 -21.03170 -20.03341 -18.57648 -17.77207 -16.64023 -16.60174 -16.33600 -16.27464 -15.81949 -15.79214 -14.91330 -14.76463 -14.30893 -14.18283 -13.90975 -13.41006 -13.39786 -13.04910 -12.89180 -12.59526 -12.38484 -12.13651 -11.81064 -11.63903 -11.32147 -11.23753 -11.18489 -11.07685 -10.97938 -10.94051 -10.66290 -10.41554 -10.31351 -10.16508 -9.96496 -8.93835 -8.88539 -8.40163 -8.04567 -7.26406 -6.25687 -4.09838 0.42228 1.09922 1.66334 1.80067 2.30986 3.01264 3.20887 3.26752 3.28960 3.42725 3.99835 4.03078 4.12845 4.25263 4.55187 4.66107 4.70196 4.72473 4.96179 4.99878 5.07364 5.11406 5.24184 5.27963 5.32950 5.35239 5.39244 5.47363 5.54002 5.59519 5.73120 5.98280 6.04148 6.14583 6.26197 6.32681 6.49697 6.52085 6.58695 6.75877 7.16432 7.43556 8.06065 8.45874 8.83850 8.92692 9.41019 10.03700 10.79518 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.004248 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.072980 B = 6590.262061 C = 8036.153927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.291 6.291 3 C 0.147 3.853 4 C -0.199 4.199 5 C -0.018 4.018 6 C -0.103 4.103 7 C 0.519 3.481 8 O -0.518 6.518 9 N -0.415 5.415 10 C -0.337 4.337 11 H 0.083 0.917 12 C 0.064 3.936 13 N -0.830 5.830 14 Si 0.915 3.085 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.061 3.939 19 C -0.170 4.170 20 C -0.213 4.213 21 C -0.067 4.067 22 C 0.077 3.923 23 N -0.307 5.307 24 C 0.215 3.785 25 N -0.334 5.334 26 N -0.056 5.056 27 N -0.055 5.055 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.267 0.733 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -10.237 0.222 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.203 6.203 3 C 0.098 3.902 4 C -0.218 4.218 5 C -0.038 4.038 6 C -0.108 4.108 7 C 0.306 3.694 8 O -0.395 6.395 9 N -0.134 5.134 10 C -0.464 4.464 11 H 0.101 0.899 12 C -0.147 4.147 13 N -0.463 5.463 14 Si 0.742 3.258 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.045 4.045 19 C -0.208 4.208 20 C -0.252 4.252 21 C -0.089 4.089 22 C -0.016 4.016 23 N -0.097 5.097 24 C -0.082 4.082 25 N -0.184 5.184 26 N -0.051 5.051 27 N -0.041 5.041 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.168 0.832 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.379 -11.281 -0.038 11.776 hybrid contribution 0.051 1.996 0.069 1.998 sum -3.328 -9.284 0.030 9.863 Atomic orbital electron populations 1.23149 0.78163 1.04234 1.01541 1.86268 1.21387 1.25109 1.87505 1.18681 0.89551 0.85762 0.96184 1.21139 1.00394 0.91063 1.09247 1.21316 0.93725 0.97584 0.91168 1.20391 0.93887 0.94500 1.02043 1.17410 0.83631 0.85441 0.82899 1.90654 1.63935 1.43368 1.41537 1.42640 1.26210 1.06911 1.37661 1.18967 0.92513 0.81309 1.53584 0.89936 1.25299 0.95341 0.99709 0.94318 1.69807 1.04464 1.31344 1.40724 0.86142 0.78796 0.82482 0.78399 1.20257 1.21089 1.19636 1.22013 0.88943 0.94183 0.99341 1.23106 1.02763 1.02224 0.92686 1.23438 1.01515 0.99616 1.00675 1.21227 1.01138 0.88449 0.98092 1.16699 0.87346 0.82458 1.15092 1.48888 1.05843 1.06839 1.48083 1.27402 0.84743 0.98198 0.97854 1.74438 1.21643 1.00372 1.21900 1.78038 0.92652 1.23355 1.11093 1.82882 1.18127 0.82718 1.20326 0.87972 0.92368 0.92383 0.83968 0.83732 0.92278 0.87499 0.87231 0.89559 0.89632 0.88485 0.83229 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.29 -3.82 8.65 -18.94 -0.16 -3.98 16 3 C 0.15 2.05 6.71 -38.86 -0.26 1.79 16 4 C -0.20 -2.59 9.01 -39.52 -0.36 -2.94 16 5 C -0.02 -0.29 9.64 -39.17 -0.38 -0.67 16 6 C -0.10 -1.87 5.27 -104.98 -0.55 -2.42 16 7 C 0.52 12.01 6.44 -12.49 -0.08 11.93 16 8 O -0.52 -14.15 14.65 5.26 0.08 -14.07 16 9 N -0.41 -9.33 2.85 -108.92 -0.31 -9.64 16 10 C -0.34 -8.37 7.85 -15.00 -0.12 -8.49 16 11 H 0.08 1.97 7.32 -52.49 -0.38 1.59 16 12 C 0.06 1.66 4.65 -17.45 -0.08 1.58 16 13 N -0.83 -22.73 11.27 55.50 0.63 -22.10 16 14 Si 0.92 20.29 29.57 -169.99 -5.03 15.26 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.06 1.07 4.39 -67.94 -0.30 0.77 16 19 C -0.17 -2.70 9.80 -26.74 -0.26 -2.96 16 20 C -0.21 -3.02 9.54 -26.74 -0.26 -3.27 16 21 C -0.07 -1.01 6.90 -39.02 -0.27 -1.28 16 22 C 0.08 1.12 6.71 -83.46 -0.56 0.56 16 23 N -0.31 -4.46 3.86 -11.68 -0.05 -4.50 16 24 C 0.21 2.71 12.15 -90.17 -1.10 1.62 16 25 N -0.33 -4.98 12.16 29.64 0.36 -4.62 16 26 N -0.06 -0.92 13.39 60.35 0.81 -0.11 16 27 N -0.05 -0.89 12.08 60.35 0.73 -0.16 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.43 7.64 -51.93 -0.40 0.03 16 30 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 31 H 0.14 1.39 6.27 -52.49 -0.33 1.06 16 32 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.11 1.73 5.87 -51.92 -0.30 1.43 16 35 H 0.11 1.95 6.79 -51.93 -0.35 1.60 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.15 2.01 4.37 -52.49 -0.23 1.78 16 40 H 0.24 1.95 7.19 -52.49 -0.38 1.57 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -32.77 340.73 -5.41 -38.18 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.02 Total: 3.20 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.58 Total: -2.60 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 2.17 Total: -41.13 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.09 Total: -18.06 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.77 -5.41 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272816812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.130 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds