Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35743 * 116.99696 * 2 1 4 4 C 1.38895 * 119.93290 * 0.27550 * 3 2 1 5 5 C 1.37739 * 120.16066 * 180.27824 * 4 3 2 6 6 C 1.39823 * 120.02687 * 359.72446 * 5 4 3 7 7 C 1.47500 * 120.06552 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00140 * 318.60430 * 7 6 5 9 9 N 1.34777 * 119.99757 * 138.59702 * 7 6 5 10 10 C 1.36908 * 119.99587 * 184.56023 * 9 7 6 11 11 H 1.08001 * 119.99964 * 224.25372 * 10 9 7 12 12 C 1.39018 * 119.99767 * 44.26394 * 10 9 7 13 13 N 1.31382 * 120.00297 * 10.00436 * 12 10 9 14 14 Si 1.86804 * 119.99992 * 190.00684 * 12 10 9 15 15 H 1.48502 * 109.47238 * 89.99613 * 14 12 10 16 16 H 1.48495 * 109.47290 * 209.99524 * 14 12 10 17 17 H 1.48504 * 109.46816 * 329.99998 * 14 12 10 18 18 C 1.46496 * 120.00597 * 4.56801 * 9 7 6 19 19 C 1.52994 * 117.50521 * 185.66744 * 18 9 7 20 20 C 1.52992 * 60.00151 * 252.50997 * 19 18 9 21 21 C 1.39719 * 119.86672 * 359.97438 * 6 5 4 22 22 C 1.38270 * 119.83982 * 0.02562 * 21 6 5 23 23 N 1.40360 * 120.01612 * 180.02562 * 22 21 6 24 24 C 1.35035 * 127.38398 * 0.02562 * 23 22 21 25 25 N 1.30759 * 107.27739 * 180.02562 * 24 23 22 26 26 N 1.28426 * 110.64007 * 0.02562 * 25 24 23 27 27 N 1.28949 * 110.19596 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47464 * 300.00182 * 1 2 3 30 30 H 1.09007 * 109.47560 * 59.99806 * 1 2 3 31 31 H 1.07995 * 119.92343 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.98792 * 179.70561 * 5 4 3 33 33 H 0.96997 * 120.00084 * 184.99808 * 13 12 10 34 34 H 1.09007 * 115.54582 * 331.38621 * 18 9 7 35 35 H 1.09003 * 117.49525 * 0.02562 * 19 18 9 36 36 H 1.09000 * 117.50317 * 145.01527 * 19 18 9 37 37 H 1.09000 * 117.49792 * 252.50564 * 20 19 18 38 38 H 1.09006 * 117.52044 * 107.47960 * 20 19 18 39 39 H 1.07998 * 120.08157 * 179.97438 * 21 6 5 40 40 H 1.07996 * 126.36339 * 359.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2873 2.3735 0.0058 5 6 1.9076 3.6032 0.0000 6 6 3.3036 3.6827 -0.0058 7 6 3.9688 4.9992 -0.0114 8 8 3.5350 5.8967 -0.7081 9 7 5.0572 5.2074 0.7556 10 6 5.6191 6.4541 0.8225 11 1 6.6916 6.5670 0.7638 12 6 4.8090 7.5748 0.9662 13 7 3.5309 7.4314 1.2344 14 14 5.5378 9.2844 0.7780 15 1 5.4468 9.7077 -0.6425 16 1 4.7841 10.2402 1.6286 17 1 6.9620 9.2643 1.1982 18 6 5.6393 4.0999 1.5176 19 6 6.7905 4.4263 2.4710 20 6 7.0666 3.6746 1.1674 21 6 4.0671 2.5126 -0.0053 22 6 3.4387 1.2810 0.0005 23 7 4.2021 0.1032 0.0016 24 6 5.5484 -0.0013 -0.0020 25 7 5.8390 -1.2761 0.0001 26 7 4.7679 -1.9846 0.0043 27 7 3.7289 -1.2209 0.0056 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2090 2.3142 0.0107 32 1 1.3156 4.5064 -0.0003 33 1 2.9512 8.2086 1.2630 34 1 4.9412 3.3190 1.8195 35 1 7.1146 5.4652 2.5316 36 1 6.8500 3.8604 3.4007 37 1 7.3078 2.6140 1.2394 38 1 7.5725 4.2186 0.3697 39 1 5.1456 2.5699 -0.0103 40 1 6.2540 0.8163 -0.0067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272816812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = 118.268276 kcal Electronic energy + Delta-G solvation = -28399.463944 eV Core-core repulsion = 24412.365894 eV Total energy + Delta-G solvation = -3987.098050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.21515 -41.64088 -40.40606 -38.45034 -37.80858 -36.09161 -34.76059 -33.33051 -33.00089 -31.63256 -31.19029 -28.43859 -27.09281 -26.09817 -24.90099 -23.81934 -23.18719 -23.08198 -22.33758 -21.48280 -19.81795 -18.93617 -18.11924 -17.78240 -17.68206 -17.46182 -16.94660 -16.70662 -16.57568 -16.21840 -15.54886 -15.45636 -15.24816 -14.78170 -14.71367 -14.20965 -14.13289 -13.82739 -13.69161 -13.40744 -13.10712 -12.86200 -12.83781 -12.79197 -12.58095 -12.24586 -12.19938 -12.06956 -12.04715 -11.95591 -11.62237 -11.53160 -11.26027 -10.76902 -10.14451 -9.99142 -9.25581 -9.01388 -8.15837 -6.02839 -0.68742 -0.08472 0.51445 0.71058 1.22225 1.41339 1.46443 1.52333 2.08786 2.12593 2.32033 2.65892 2.93984 3.05266 3.14147 3.27324 3.44553 3.63539 3.67310 3.89397 3.96969 4.09400 4.13177 4.18538 4.28698 4.36348 4.40046 4.41068 4.41671 4.48196 4.75348 4.82187 4.91679 4.97963 5.04682 5.20411 5.28826 5.33289 5.42407 5.49185 5.52005 6.17971 6.20496 7.00952 7.16426 7.34231 7.63203 8.29959 8.88000 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.004248 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.072980 B = 6590.262061 C = 8036.153927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.305 6.305 3 C 0.155 3.845 4 C -0.182 4.182 5 C -0.027 4.027 6 C -0.132 4.132 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.430 5.430 10 C -0.343 4.343 11 H 0.086 0.914 12 C 0.013 3.987 13 N -0.868 5.868 14 Si 0.969 3.031 15 H -0.289 1.289 16 H -0.285 1.285 17 H -0.253 1.253 18 C 0.033 3.967 19 C -0.174 4.174 20 C -0.180 4.180 21 C -0.047 4.047 22 C 0.074 3.926 23 N -0.311 5.311 24 C 0.229 3.771 25 N -0.349 5.349 26 N -0.071 5.071 27 N -0.071 5.071 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.177 0.823 32 H 0.128 0.872 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.167 0.833 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -12.476 0.672 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.216 6.216 3 C 0.105 3.895 4 C -0.201 4.201 5 C -0.046 4.046 6 C -0.136 4.136 7 C 0.300 3.700 8 O -0.459 6.459 9 N -0.149 5.149 10 C -0.471 4.471 11 H 0.104 0.896 12 C -0.194 4.194 13 N -0.503 5.503 14 Si 0.795 3.205 15 H -0.215 1.215 16 H -0.211 1.211 17 H -0.176 1.176 18 C -0.072 4.072 19 C -0.212 4.212 20 C -0.218 4.218 21 C -0.068 4.068 22 C -0.019 4.019 23 N -0.101 5.101 24 C -0.067 4.067 25 N -0.199 5.199 26 N -0.066 5.066 27 N -0.057 5.057 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.194 0.806 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.153 0.847 38 H 0.104 0.896 39 H 0.184 0.816 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.542 -13.562 0.444 13.805 hybrid contribution -0.214 2.512 -0.089 2.523 sum -2.756 -11.049 0.354 11.393 Atomic orbital electron populations 1.23520 0.75717 1.06049 1.02959 1.86279 1.23948 1.24519 1.86897 1.18854 0.89665 0.86374 0.94582 1.21303 1.01934 0.89332 1.07503 1.21254 0.93088 0.98379 0.91917 1.19949 0.94665 0.93056 1.05947 1.18128 0.83408 0.86656 0.81768 1.90596 1.65538 1.45893 1.43859 1.42817 1.26392 1.07503 1.38140 1.19204 0.92675 0.82768 1.52431 0.89634 1.26088 0.95671 1.03055 0.94538 1.69924 1.05633 1.31486 1.43283 0.85301 0.79087 0.78778 0.77364 1.21539 1.21110 1.17632 1.22229 0.90479 0.93523 1.00985 1.23161 1.01605 1.01707 0.94693 1.23527 0.97468 1.02024 0.98814 1.21082 1.01565 0.87416 0.96781 1.16674 0.87799 0.82262 1.15178 1.48866 1.06491 1.06308 1.48461 1.28212 0.84540 0.98464 0.95435 1.74409 1.21463 1.01365 1.22647 1.78035 0.93116 1.23960 1.11528 1.82860 1.18430 0.83382 1.21059 0.86162 0.90900 0.90927 0.80585 0.85365 0.93126 0.86020 0.89832 0.86769 0.84716 0.89617 0.81626 0.70766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.31 -7.13 8.65 -90.68 -0.78 -7.91 16 3 C 0.15 3.92 6.71 22.74 0.15 4.07 16 4 C -0.18 -4.35 9.01 22.31 0.20 -4.15 16 5 C -0.03 -0.85 9.64 22.54 0.22 -0.64 16 6 C -0.13 -4.75 5.27 -20.09 -0.11 -4.86 16 7 C 0.51 24.37 6.44 86.68 0.56 24.92 16 8 O -0.58 -33.24 14.65 -4.09 -0.06 -33.30 16 9 N -0.43 -19.55 2.85 -616.75 -1.76 -21.31 16 10 C -0.34 -17.43 7.85 84.09 0.66 -16.77 16 11 H 0.09 4.14 7.32 -2.91 -0.02 4.12 16 12 C 0.01 0.67 4.65 84.95 0.40 1.07 16 13 N -0.87 -49.83 11.27 21.68 0.24 -49.58 16 14 Si 0.97 42.92 29.57 68.60 2.03 44.95 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 18 C 0.03 1.08 4.39 44.99 0.20 1.28 16 19 C -0.17 -5.13 9.80 30.59 0.30 -4.83 16 20 C -0.18 -4.43 9.54 30.59 0.29 -4.14 16 21 C -0.05 -1.31 6.90 22.64 0.16 -1.16 16 22 C 0.07 1.95 6.71 38.09 0.26 2.21 16 23 N -0.31 -8.12 3.86 -190.87 -0.74 -8.85 16 24 C 0.23 4.92 12.15 180.19 2.19 7.11 16 25 N -0.35 -9.41 12.16 -60.14 -0.73 -10.14 16 26 N -0.07 -2.19 13.39 37.02 0.50 -1.69 16 27 N -0.07 -2.15 12.08 37.02 0.45 -1.70 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 0.81 7.64 -2.38 -0.02 0.79 16 30 H 0.07 0.81 7.67 -2.38 -0.02 0.79 16 31 H 0.18 2.90 6.27 -2.91 -0.02 2.89 16 32 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.12 3.65 5.87 -2.38 -0.01 3.64 16 35 H 0.08 2.92 6.79 -2.39 -0.02 2.91 16 36 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.17 3.91 4.37 -2.91 -0.01 3.89 16 40 H 0.28 3.06 7.19 -2.91 -0.02 3.04 16 Total: -1.00 -76.28 340.73 6.83 -69.44 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.11 Total: 14.71 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.58 Total: 5.39 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -2.04 Total: -93.28 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.84 Total: -41.21 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -76.28 6.83 -69.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272816812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.710 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds