Wall clock time and date at job start Tue Mar 31 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47137 * 292.77440 * 3 2 1 5 5 C 1.37104 * 120.00146 * 98.06256 * 4 3 2 6 6 H 1.07997 * 119.99987 * 159.37125 * 5 4 3 7 7 C 1.38950 * 119.99652 * 339.36903 * 5 4 3 8 8 N 1.31411 * 120.00119 * 344.07938 * 7 5 4 9 9 Si 1.86802 * 119.99767 * 164.07969 * 7 5 4 10 10 H 1.48499 * 109.46878 * 89.99810 * 9 7 5 11 11 H 1.48499 * 109.47235 * 210.00197 * 9 7 5 12 12 H 1.48506 * 109.47210 * 330.00197 * 9 7 5 13 13 C 1.34783 * 120.00274 * 277.78975 * 4 3 2 14 14 O 1.21282 * 120.00385 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99525 * 359.97438 * 13 4 3 16 16 N 1.46900 * 109.46688 * 180.02562 * 15 13 4 17 17 C 1.46898 * 110.99977 * 294.30085 * 16 15 13 18 18 C 1.53239 * 109.34015 * 172.74968 * 17 16 15 19 19 N 1.47085 * 108.52053 * 53.83264 * 18 17 16 20 20 S 1.65603 * 120.88232 * 128.79397 * 19 18 17 21 21 C 1.81397 * 104.44794 * 270.01993 * 20 19 18 22 22 O 1.42101 * 104.27596 * 26.09189 * 20 19 18 23 23 O 1.42097 * 104.27427 * 153.94568 * 20 19 18 24 24 C 1.47080 * 118.23380 * 308.81578 * 19 18 17 25 25 C 1.46902 * 110.99666 * 170.00305 * 16 15 13 26 26 H 4.40635 * 5.51359 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.47245 * 172.77568 * 3 2 1 28 28 H 1.09001 * 109.46952 * 52.77473 * 3 2 1 29 29 H 0.96996 * 119.99660 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47169 * 300.00516 * 15 13 4 31 31 H 1.09004 * 109.46717 * 60.00334 * 15 13 4 32 32 H 1.09004 * 109.49566 * 292.71005 * 17 16 15 33 33 H 1.08998 * 109.49554 * 52.78665 * 17 16 15 34 34 H 1.08999 * 109.63082 * 294.12182 * 18 17 16 35 35 H 1.09004 * 109.62927 * 173.54141 * 18 17 16 36 36 H 1.09001 * 109.46974 * 60.00593 * 21 20 19 37 37 H 1.08999 * 109.46865 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47073 * 300.00002 * 21 20 19 39 39 H 1.09006 * 109.62970 * 291.47018 * 24 19 18 40 40 H 1.09003 * 109.62475 * 170.90131 * 24 19 18 41 41 H 1.08996 * 109.49470 * 307.21094 * 25 16 15 42 42 H 1.09002 * 109.49800 * 67.29065 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.5338 1.2735 5 6 3.5206 -1.8463 1.3632 6 1 4.1750 -2.1633 2.1617 7 6 3.0699 -2.7685 0.4267 8 7 2.0478 -2.4750 -0.3453 9 14 3.9170 -4.4256 0.2651 10 1 3.2678 -5.4040 1.1741 11 1 3.8069 -4.9033 -1.1366 12 1 5.3500 -4.2866 0.6296 13 6 3.2097 0.2662 2.3557 14 8 3.6146 -0.1762 3.4099 15 6 2.7916 1.7106 2.2554 16 7 2.9673 2.3628 3.5598 17 6 2.0527 1.7954 4.5596 18 6 2.3895 2.3702 5.9396 19 7 2.3790 3.8383 5.8494 20 16 1.5045 4.7494 6.9206 21 6 -0.1252 4.9222 6.1429 22 8 1.4186 3.9369 8.0833 23 8 2.1787 5.9999 6.9490 24 6 3.1654 4.4755 4.7823 25 6 2.7982 3.8178 3.4479 26 1 -1.0499 0.0001 0.0002 27 1 3.0089 1.0203 -0.1292 28 1 3.0096 -0.6209 -0.8183 29 1 1.7330 -3.1190 -0.9988 30 1 3.4068 2.2160 1.5109 31 1 1.7440 1.7658 1.9592 32 1 1.0256 2.0514 4.2997 33 1 2.1636 0.7113 4.5802 34 1 3.3781 2.0293 6.2470 35 1 1.6443 2.0426 6.6645 36 1 -0.5638 3.9353 5.9953 37 1 -0.7739 5.5159 6.7869 38 1 -0.0169 5.4197 5.1791 39 1 4.2287 4.3370 4.9785 40 1 2.9333 5.5398 4.7422 41 1 3.4497 4.2003 2.6623 42 1 1.7606 4.0457 3.2035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281148873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:02 Heat of formation + Delta-G solvation = -6.822620 kcal Electronic energy + Delta-G solvation = -26917.440060 eV Core-core repulsion = 23028.068862 eV Total energy + Delta-G solvation = -3889.371198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -39.38002 -38.05227 -37.31706 -36.11049 -35.30171 -34.19921 -32.17649 -31.29172 -31.06276 -29.71569 -28.47502 -26.50650 -25.18771 -23.75285 -23.55844 -20.69291 -19.19106 -18.82606 -17.94419 -17.75161 -16.71366 -16.51202 -16.39793 -16.12284 -15.09788 -14.95803 -14.79268 -14.65866 -14.45283 -14.04463 -13.85444 -13.61775 -13.53078 -13.42570 -12.86508 -12.57626 -12.42248 -12.31930 -12.25853 -12.11935 -11.80802 -11.66031 -11.52403 -11.31531 -11.23730 -11.03997 -10.95271 -10.63242 -10.55729 -10.33942 -9.47030 -9.35596 -9.21174 -8.93124 -8.44572 -7.95127 -7.85647 -6.35159 -3.92285 0.06922 2.44058 3.13281 3.23227 3.28094 3.59170 3.69083 3.80596 3.92468 3.94543 4.00548 4.18583 4.40621 4.63320 4.67926 4.89227 5.01123 5.06260 5.19404 5.27289 5.32895 5.37449 5.38621 5.46760 5.62414 5.74566 5.77756 5.86602 5.90814 5.99228 6.16608 6.20174 6.26336 6.53872 6.72995 6.95682 7.17405 7.30929 7.52593 8.04734 8.40371 8.70101 9.11280 9.31962 9.88074 10.65882 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002998 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.454199 B = 9336.540819 C = 9718.443460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.111 4.111 3 C 0.231 3.769 4 N -0.443 5.443 5 C -0.310 4.310 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.871 5.871 9 Si 0.924 3.076 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.456 3.544 14 O -0.564 6.564 15 C 0.044 3.956 16 N -0.513 5.513 17 C 0.038 3.962 18 C 0.131 3.869 19 N -1.000 6.000 20 S 2.611 3.389 21 C -0.676 4.676 22 O -0.955 6.955 23 O -0.959 6.959 24 C 0.130 3.870 25 C 0.039 3.961 26 H 0.198 0.802 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 14.364 4.061 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.112 4.112 3 C 0.107 3.893 4 N -0.163 5.163 5 C -0.437 4.437 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.510 5.510 9 Si 0.750 3.250 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.446 6.446 15 C -0.087 4.087 16 N -0.238 5.238 17 C -0.091 4.091 18 C 0.006 3.994 19 N -0.839 5.839 20 S 2.704 3.296 21 C -0.825 4.825 22 O -0.945 6.945 23 O -0.949 6.949 24 C 0.004 3.996 25 C -0.091 4.091 26 H 0.215 0.785 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.289 14.276 5.421 15.621 hybrid contribution -1.538 -0.926 -1.335 2.237 sum -4.828 13.350 4.086 14.772 Atomic orbital electron populations 1.24283 0.95399 1.06294 1.02501 1.23277 0.94428 0.95336 0.98187 1.18287 0.84050 0.96840 0.90109 1.43661 1.56054 1.09963 1.06622 1.19646 1.27303 0.82792 1.13956 0.87942 1.25307 0.95282 0.99543 0.97211 1.70013 1.21751 1.36348 1.22853 0.85974 0.79914 0.81718 0.77368 1.20458 1.20912 1.19392 1.19905 0.84268 0.87209 0.84234 1.90490 1.50060 1.76075 1.27981 1.21957 1.00286 0.95407 0.91009 1.61454 1.53458 1.01986 1.06887 1.22670 0.92464 1.02895 0.91091 1.21565 1.03889 0.76891 0.97064 1.57792 1.61403 1.16694 1.48023 1.04864 0.76563 0.73739 0.74420 1.30616 1.25510 1.11613 1.14756 1.93609 1.87041 1.68560 1.45340 1.93592 1.71122 1.43788 1.86418 1.21501 0.97016 0.95776 0.85275 1.22528 0.99781 0.89142 0.97658 0.78460 0.92395 0.86711 0.92177 0.89340 0.93014 0.95628 0.86794 0.89655 0.89262 0.85404 0.85711 0.85565 0.89917 0.89220 0.89563 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.18 19.25 29.55 0.57 -4.61 16 2 C -0.11 -2.33 10.80 -37.12 -0.40 -2.73 16 3 C 0.23 4.79 4.90 -6.83 -0.03 4.76 16 4 N -0.44 -10.55 2.61 -117.93 -0.31 -10.86 16 5 C -0.31 -8.15 9.31 -14.93 -0.14 -8.29 16 6 H 0.10 2.85 7.40 -52.49 -0.39 2.46 16 7 C 0.03 0.75 4.98 -17.47 -0.09 0.67 16 8 N -0.87 -22.06 9.38 55.50 0.52 -21.54 16 9 Si 0.92 19.99 29.58 -169.99 -5.03 14.97 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 13 C 0.46 10.27 7.20 -10.98 -0.08 10.19 16 14 O -0.56 -14.38 14.01 5.56 0.08 -14.30 16 15 C 0.04 0.76 4.07 -4.97 -0.02 0.74 16 16 N -0.51 -7.92 4.37 -235.76 -1.03 -8.95 16 17 C 0.04 0.58 5.26 -3.70 -0.02 0.56 16 18 C 0.13 1.70 6.47 -3.60 -0.02 1.67 16 19 N -1.00 -11.22 3.26 -113.23 -0.37 -11.59 16 20 S 2.61 26.92 6.06 -107.50 -0.65 26.27 16 21 C -0.68 -4.56 10.99 101.05 1.11 -3.45 16 22 O -0.96 -13.01 16.79 -57.54 -0.97 -13.97 16 23 O -0.96 -12.30 16.79 -57.54 -0.97 -13.26 16 24 C 0.13 1.36 6.47 -3.60 -0.02 1.33 16 25 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 26 H 0.20 3.12 7.80 -54.10 -0.42 2.70 16 27 H 0.06 0.98 6.77 -51.93 -0.35 0.63 16 28 H 0.12 2.56 6.35 -51.93 -0.33 2.23 16 29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.09 1.33 7.26 -51.93 -0.38 0.95 16 31 H 0.05 0.87 7.35 -51.93 -0.38 0.49 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.11 2.14 5.77 -51.93 -0.30 1.84 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.03 7.19 -51.93 -0.37 0.65 16 36 H 0.13 0.81 8.14 -51.92 -0.42 0.38 16 37 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.75 7.19 -51.93 -0.37 0.38 16 41 H 0.09 0.84 7.99 -51.93 -0.41 0.43 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -34.07 355.83 -8.33 -42.40 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.80 Total: 4.22 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 0.83 Total: 1.26 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -1.19 Total: -52.94 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.85 Total: -41.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.97 kcal Atomic # 16 Polarization: 26.92 SS G_CDS: -0.65 Total: 26.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.07 -8.33 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281148873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.582 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds