Wall clock time and date at job start Tue Mar 31 2020 05:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47137 * 292.77440 * 3 2 1 5 5 C 1.37104 * 120.00146 * 98.06256 * 4 3 2 6 6 H 1.07997 * 119.99987 * 159.37125 * 5 4 3 7 7 C 1.38950 * 119.99652 * 339.36903 * 5 4 3 8 8 N 1.31411 * 120.00119 * 344.07938 * 7 5 4 9 9 Si 1.86802 * 119.99767 * 164.07969 * 7 5 4 10 10 H 1.48499 * 109.46878 * 89.99810 * 9 7 5 11 11 H 1.48499 * 109.47235 * 210.00197 * 9 7 5 12 12 H 1.48506 * 109.47210 * 330.00197 * 9 7 5 13 13 C 1.34783 * 120.00274 * 277.78975 * 4 3 2 14 14 O 1.21282 * 120.00385 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99525 * 359.97438 * 13 4 3 16 16 N 1.46900 * 109.46688 * 180.02562 * 15 13 4 17 17 C 1.46898 * 110.99977 * 294.30085 * 16 15 13 18 18 C 1.53239 * 109.34015 * 172.74968 * 17 16 15 19 19 N 1.47085 * 108.52053 * 53.83264 * 18 17 16 20 20 S 1.65603 * 120.88232 * 128.79397 * 19 18 17 21 21 C 1.81397 * 104.44794 * 270.01993 * 20 19 18 22 22 O 1.42101 * 104.27596 * 26.09189 * 20 19 18 23 23 O 1.42097 * 104.27427 * 153.94568 * 20 19 18 24 24 C 1.47080 * 118.23380 * 308.81578 * 19 18 17 25 25 C 1.46902 * 110.99666 * 170.00305 * 16 15 13 26 26 H 4.40635 * 5.51359 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.47245 * 172.77568 * 3 2 1 28 28 H 1.09001 * 109.46952 * 52.77473 * 3 2 1 29 29 H 0.96996 * 119.99660 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47169 * 300.00516 * 15 13 4 31 31 H 1.09004 * 109.46717 * 60.00334 * 15 13 4 32 32 H 1.09004 * 109.49566 * 292.71005 * 17 16 15 33 33 H 1.08998 * 109.49554 * 52.78665 * 17 16 15 34 34 H 1.08999 * 109.63082 * 294.12182 * 18 17 16 35 35 H 1.09004 * 109.62927 * 173.54141 * 18 17 16 36 36 H 1.09001 * 109.46974 * 60.00593 * 21 20 19 37 37 H 1.08999 * 109.46865 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47073 * 300.00002 * 21 20 19 39 39 H 1.09006 * 109.62970 * 291.47018 * 24 19 18 40 40 H 1.09003 * 109.62475 * 170.90131 * 24 19 18 41 41 H 1.08996 * 109.49470 * 307.21094 * 25 16 15 42 42 H 1.09002 * 109.49800 * 67.29065 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.5338 1.2735 5 6 3.5206 -1.8463 1.3632 6 1 4.1750 -2.1633 2.1617 7 6 3.0699 -2.7685 0.4267 8 7 2.0478 -2.4750 -0.3453 9 14 3.9170 -4.4256 0.2651 10 1 3.2678 -5.4040 1.1741 11 1 3.8069 -4.9033 -1.1366 12 1 5.3500 -4.2866 0.6296 13 6 3.2097 0.2662 2.3557 14 8 3.6146 -0.1762 3.4099 15 6 2.7916 1.7106 2.2554 16 7 2.9673 2.3628 3.5598 17 6 2.0527 1.7954 4.5596 18 6 2.3895 2.3702 5.9396 19 7 2.3790 3.8383 5.8494 20 16 1.5045 4.7494 6.9206 21 6 -0.1252 4.9222 6.1429 22 8 1.4186 3.9369 8.0833 23 8 2.1787 5.9999 6.9490 24 6 3.1654 4.4755 4.7823 25 6 2.7982 3.8178 3.4479 26 1 -1.0499 0.0001 0.0002 27 1 3.0089 1.0203 -0.1292 28 1 3.0096 -0.6209 -0.8183 29 1 1.7330 -3.1190 -0.9988 30 1 3.4068 2.2160 1.5109 31 1 1.7440 1.7658 1.9592 32 1 1.0256 2.0514 4.2997 33 1 2.1636 0.7113 4.5802 34 1 3.3781 2.0293 6.2470 35 1 1.6443 2.0426 6.6645 36 1 -0.5638 3.9353 5.9953 37 1 -0.7739 5.5159 6.7869 38 1 -0.0169 5.4197 5.1791 39 1 4.2287 4.3370 4.9785 40 1 2.9333 5.5398 4.7422 41 1 3.4497 4.2003 2.6623 42 1 1.7606 4.0457 3.2035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281148873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:01 Heat of formation + Delta-G solvation = -33.296778 kcal Electronic energy + Delta-G solvation = -26918.588066 eV Core-core repulsion = 23028.068862 eV Total energy + Delta-G solvation = -3890.519204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.81875 -39.38011 -38.23044 -37.05804 -36.97433 -35.38950 -33.95319 -32.97550 -32.06614 -30.29240 -29.79610 -28.15148 -26.69326 -25.03592 -24.73136 -21.69126 -20.77965 -19.75398 -19.61523 -18.69297 -18.38292 -17.91456 -17.33120 -17.12936 -16.56408 -16.37979 -16.20548 -15.71022 -15.57389 -15.47550 -15.29630 -14.82873 -14.23745 -14.13563 -14.06367 -13.98109 -13.82969 -13.49355 -13.32712 -13.31702 -13.18765 -12.92773 -12.80247 -12.78066 -12.44435 -12.21733 -12.18339 -12.10309 -12.03152 -11.63742 -11.15863 -11.07182 -10.59843 -10.30062 -9.96717 -9.72117 -9.13048 -8.26033 -5.90006 -0.70782 1.38466 1.44241 1.55289 1.61251 1.95637 2.16701 2.35151 2.40226 2.82144 2.95360 3.11739 3.14379 3.36473 3.60696 3.89105 4.03924 4.06582 4.09460 4.17353 4.24199 4.33957 4.36484 4.46300 4.50589 4.56444 4.75330 4.80161 4.90613 4.95547 5.00783 5.06772 5.11279 5.17926 5.46027 5.50442 5.55638 5.93970 6.16609 6.27004 6.53912 7.15362 7.22747 7.49801 8.08532 8.72068 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002998 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.454199 B = 9336.540819 C = 9718.443460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.150 4.150 3 C 0.234 3.766 4 N -0.458 5.458 5 C -0.342 4.342 6 H 0.073 0.927 7 C 0.002 3.998 8 N -0.879 5.879 9 Si 0.980 3.020 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.272 1.272 13 C 0.446 3.554 14 O -0.605 6.605 15 C 0.061 3.939 16 N -0.534 5.534 17 C 0.043 3.957 18 C 0.140 3.860 19 N -1.003 6.003 20 S 2.617 3.383 21 C -0.652 4.652 22 O -0.996 6.996 23 O -0.987 6.987 24 C 0.127 3.873 25 C 0.039 3.961 26 H 0.231 0.769 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.270 0.730 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 16.332 2.859 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.151 4.151 3 C 0.111 3.889 4 N -0.178 5.178 5 C -0.470 4.470 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.517 5.517 9 Si 0.805 3.195 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.197 1.197 13 C 0.236 3.764 14 O -0.490 6.490 15 C -0.070 4.070 16 N -0.259 5.259 17 C -0.087 4.087 18 C 0.014 3.986 19 N -0.841 5.841 20 S 2.715 3.285 21 C -0.805 4.805 22 O -0.987 6.987 23 O -0.978 6.978 24 C 0.002 3.998 25 C -0.090 4.090 26 H 0.248 0.752 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.123 0.877 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.143 16.272 4.212 17.577 hybrid contribution -1.029 -1.492 -0.936 2.040 sum -6.172 14.780 3.276 16.349 Atomic orbital electron populations 1.25120 0.96340 1.04716 1.00760 1.23519 0.95014 0.96823 0.99754 1.18313 0.84422 0.98207 0.87951 1.43865 1.56369 1.09390 1.08164 1.19517 1.28353 0.84870 1.14259 0.90956 1.25890 0.95566 1.02016 0.96549 1.70107 1.21883 1.37042 1.22684 0.85134 0.78689 0.78036 0.77634 1.20928 1.19493 1.19654 1.20931 0.82842 0.89388 0.83261 1.90465 1.51550 1.77477 1.29523 1.21775 1.00823 0.91711 0.92665 1.61398 1.54158 1.04418 1.05974 1.22495 0.93496 1.00402 0.92266 1.21319 1.02971 0.78216 0.96127 1.57716 1.62522 1.15587 1.48237 1.04531 0.77758 0.72472 0.73772 1.30381 1.21311 1.13176 1.15672 1.93557 1.88004 1.69327 1.47816 1.93553 1.72998 1.44461 1.86773 1.21619 0.96419 0.97082 0.84712 1.22671 1.01625 0.86072 0.98599 0.75244 0.88594 0.88804 0.92046 0.86786 0.92249 0.93811 0.91232 0.92006 0.88124 0.84242 0.83471 0.83250 0.91195 0.86527 0.87680 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.19 19.25 74.32 1.43 -7.76 16 2 C -0.15 -6.10 10.80 31.13 0.34 -5.77 16 3 C 0.23 9.61 4.90 84.58 0.41 10.02 16 4 N -0.46 -22.25 2.61 -645.42 -1.68 -23.93 16 5 C -0.34 -18.69 9.31 84.04 0.78 -17.91 16 6 H 0.07 4.28 7.40 -2.91 -0.02 4.26 16 7 C 0.00 0.12 4.98 84.93 0.42 0.54 16 8 N -0.88 -44.53 9.38 21.66 0.20 -44.33 16 9 Si 0.98 41.60 29.58 68.60 2.03 43.63 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 C 0.45 20.52 7.20 87.66 0.63 21.15 16 14 O -0.61 -32.47 14.01 -3.04 -0.04 -32.51 16 15 C 0.06 2.00 4.07 85.56 0.35 2.35 16 16 N -0.53 -15.88 4.37 -899.81 -3.93 -19.82 16 17 C 0.04 1.30 5.26 86.38 0.45 1.75 16 18 C 0.14 3.65 6.47 86.35 0.56 4.20 16 19 N -1.00 -21.13 3.26 -512.15 -1.67 -22.80 16 20 S 2.62 49.42 6.06 -56.49 -0.34 49.08 16 21 C -0.65 -6.00 10.99 113.37 1.25 -4.75 16 22 O -1.00 -26.71 16.79 -127.65 -2.14 -28.85 16 23 O -0.99 -23.76 16.79 -127.65 -2.14 -25.91 16 24 C 0.13 2.39 6.47 86.35 0.56 2.94 16 25 C 0.04 0.76 5.62 86.38 0.49 1.24 16 26 H 0.23 6.45 7.80 -4.42 -0.03 6.42 16 27 H 0.10 3.09 6.77 -2.39 -0.02 3.08 16 28 H 0.09 4.22 6.35 -2.39 -0.02 4.20 16 29 H 0.27 13.05 8.31 -92.71 -0.77 12.27 16 30 H 0.11 3.11 7.26 -2.39 -0.02 3.10 16 31 H 0.06 1.87 7.35 -2.38 -0.02 1.85 16 32 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.07 2.75 5.77 -2.39 -0.01 2.73 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 2.34 7.19 -2.39 -0.02 2.32 16 36 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.12 1.58 7.19 -2.39 -0.02 1.56 16 41 H 0.11 1.67 7.99 -2.39 -0.02 1.65 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -77.32 355.83 -1.03 -78.35 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.03 Total: 19.08 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 7.67 Total: 8.01 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -7.08 Total: -110.88 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -4.33 Total: -87.27 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.34 Total: 49.08 kcal Total: -77.32 -1.03 -78.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281148873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.056 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds