Wall clock time and date at job start Tue Mar 31 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00334 * 2 1 4 4 C 1.53002 * 109.47209 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47002 * 66.28335 * 4 3 2 6 6 C 1.46502 * 120.00182 * 274.70293 * 5 4 3 7 7 C 1.50702 * 109.47039 * 280.92488 * 6 5 4 8 8 H 1.07995 * 119.99704 * 3.27344 * 7 6 5 9 9 C 1.37877 * 119.99805 * 183.27933 * 7 6 5 10 10 N 1.31512 * 119.99893 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99707 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47114 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47281 * 119.99695 * 11 9 7 14 14 H 1.48505 * 109.46596 * 239.99289 * 11 9 7 15 15 S 1.65608 * 119.99981 * 94.70118 * 5 4 3 16 16 O 1.42102 * 106.39947 * 330.14230 * 15 5 4 17 17 O 1.42093 * 106.40296 * 197.22043 * 15 5 4 18 18 N 1.65604 * 107.21410 * 83.67931 * 15 5 4 19 19 C 1.46505 * 119.99620 * 64.81748 * 18 15 5 20 20 C 1.50705 * 109.46645 * 164.86912 * 19 18 15 21 21 C 1.38643 * 120.78883 * 269.71532 * 20 19 18 22 22 C 1.38203 * 119.16150 * 179.79909 * 21 20 19 23 23 N 1.31872 * 120.76702 * 0.49095 * 22 21 20 24 24 C 1.31872 * 121.72085 * 359.73970 * 23 22 21 25 25 C 1.38210 * 120.76685 * 0.02562 * 24 23 22 26 26 H 1.08992 * 109.47520 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46744 * 299.99563 * 1 2 3 28 28 H 1.09004 * 109.47327 * 59.99370 * 1 2 3 29 29 H 1.09001 * 109.46467 * 60.00355 * 3 2 1 30 30 H 1.08992 * 109.47340 * 300.00645 * 3 2 1 31 31 H 1.09005 * 109.46934 * 306.28281 * 4 3 2 32 32 H 1.09000 * 109.46958 * 186.28362 * 4 3 2 33 33 H 1.09003 * 109.46803 * 40.92397 * 6 5 4 34 34 H 1.08996 * 109.47075 * 160.92401 * 6 5 4 35 35 H 0.97006 * 119.99428 * 180.02562 * 10 9 7 36 36 H 0.96994 * 120.00367 * 244.80883 * 18 15 5 37 37 H 1.09004 * 109.46814 * 284.86293 * 19 18 15 38 38 H 1.08996 * 109.47402 * 44.86692 * 19 18 15 39 39 H 1.08006 * 120.41958 * 0.02562 * 21 20 19 40 40 H 1.08006 * 119.62108 * 180.20411 * 22 21 20 41 41 H 1.07995 * 119.61840 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.41950 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9779 0.5924 -1.2655 6 6 4.0090 -0.8640 -1.4212 7 6 5.2424 -1.4144 -0.7530 8 1 5.9064 -0.7531 -0.2162 9 6 5.5233 -2.7623 -0.8270 10 7 4.7144 -3.5675 -1.4804 11 14 7.0519 -3.4447 0.0020 12 1 7.7893 -2.3403 0.6666 13 1 6.6561 -4.4561 1.0147 14 1 7.9256 -4.0801 -1.0170 15 16 4.4428 1.5694 -2.5193 16 8 3.6959 2.7713 -2.3897 17 8 4.4185 0.7614 -3.6879 18 7 6.0281 1.9741 -2.2634 19 6 7.0627 0.9372 -2.2929 20 6 8.4191 1.5841 -2.4064 21 6 8.9821 1.8390 -3.6475 22 6 10.2261 2.4375 -3.7125 23 7 10.8798 2.7561 -2.6124 24 6 10.3771 2.5242 -1.4154 25 6 9.1361 1.9331 -1.2722 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6887 1.8463 0.8901 30 1 1.6887 1.8464 -0.8898 31 1 3.8500 0.5494 0.8276 32 1 3.9784 2.1742 0.1118 33 1 3.1216 -1.2977 -0.9601 34 1 4.0272 -1.1156 -2.4816 35 1 4.9119 -4.5159 -1.5321 36 1 6.2717 2.8975 -2.0942 37 1 7.0155 0.3507 -1.3752 38 1 6.8986 0.2843 -3.1501 39 1 8.4536 1.5766 -4.5521 40 1 10.6702 2.6426 -4.6754 41 1 10.9418 2.7994 -0.5370 42 1 8.7300 1.7453 -0.2892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283496831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:07 Heat of formation + Delta-G solvation = -83.832777 kcal Electronic energy + Delta-G solvation = -27046.447911 eV Core-core repulsion = 23153.737302 eV Total energy + Delta-G solvation = -3892.710609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.15153 -37.73163 -36.71811 -35.63187 -35.31376 -35.24835 -32.58912 -31.88951 -31.22052 -29.49429 -26.81054 -26.11987 -25.66364 -23.46265 -22.86625 -21.98758 -21.73821 -18.96050 -17.50835 -17.16328 -16.70584 -16.40275 -16.21338 -15.92767 -15.66578 -15.60729 -15.27567 -14.83258 -14.47037 -14.33571 -13.80402 -13.78845 -13.49934 -13.05955 -12.75783 -12.51477 -12.34706 -12.03962 -11.90312 -11.69208 -11.62874 -11.51386 -11.44913 -11.22721 -11.10102 -10.88622 -10.65096 -10.43089 -10.07287 -9.80726 -9.68435 -9.53586 -9.29193 -9.18802 -9.10668 -8.47086 -8.03524 -6.08787 -4.14779 1.00143 1.11471 1.39893 3.23494 3.31178 3.32859 3.46409 3.83145 4.11308 4.17534 4.35812 4.42087 4.61022 4.77871 5.04557 5.12233 5.13401 5.25132 5.33571 5.43436 5.52564 5.55539 5.62760 5.65120 5.70146 5.75084 5.78724 5.86321 5.94427 6.02127 6.20023 6.32252 6.42888 6.56438 6.67749 7.19398 7.47100 7.53375 7.56227 7.75948 7.90035 7.91737 8.20242 8.89227 9.49788 10.99183 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.005171 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.251690 B = 5413.143019 C = 7166.467306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.983 5.983 6 C 0.242 3.758 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.885 5.885 11 Si 0.887 3.113 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 S 2.782 3.218 16 O -1.001 7.001 17 O -0.975 6.975 18 N -1.127 6.127 19 C 0.155 3.845 20 C -0.044 4.044 21 C -0.157 4.157 22 C 0.093 3.907 23 N -0.489 5.489 24 C 0.093 3.907 25 C -0.157 4.157 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.407 0.593 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 11.238 1.871 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.825 5.825 6 C 0.120 3.880 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.523 5.523 11 Si 0.715 3.285 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 S 2.790 3.210 16 O -0.985 6.985 17 O -0.958 6.958 18 N -0.885 5.885 19 C 0.029 3.971 20 C -0.053 4.053 21 C -0.177 4.177 22 C -0.064 4.064 23 N -0.198 5.198 24 C -0.064 4.064 25 C -0.177 4.177 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.156 0.844 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.986 11.306 0.955 11.733 hybrid contribution 0.138 -0.453 0.988 1.096 sum 3.123 10.853 1.943 11.459 Atomic orbital electron populations 1.22699 0.82385 1.02424 0.99108 1.88101 1.18414 1.27050 1.95152 1.23113 0.95379 0.85192 0.99937 1.21048 0.91359 0.97901 0.88689 1.57640 1.78434 1.19675 1.26753 1.19347 0.98351 0.71468 0.98855 1.21545 1.08675 0.93043 1.34441 0.92016 1.24922 0.96572 0.96990 0.95231 1.69950 1.36735 1.04431 1.41165 0.86632 0.83210 0.79284 0.79390 1.19713 1.20981 1.20964 1.01869 0.72553 0.72390 0.74161 1.93549 1.69351 1.47961 1.87640 1.93583 1.86214 1.69699 1.46351 1.56074 1.25647 1.16221 1.90583 1.20380 0.82236 0.88847 1.05630 1.20495 0.96245 0.95396 0.93182 1.22216 0.97054 0.99863 0.98596 1.22746 0.91771 0.94793 0.97100 1.67652 1.35728 1.17557 0.98878 1.22741 0.93192 0.95215 0.95267 1.22189 0.96104 0.99637 0.99771 0.89864 0.94812 0.94618 0.93258 0.93079 0.88962 0.90568 0.92762 0.93051 0.92713 0.76121 0.88204 0.88889 0.84396 0.82812 0.82835 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.64 9.07 -35.23 -0.32 -6.96 16 3 C 0.04 0.67 6.28 37.16 0.23 0.91 16 4 C 0.14 2.26 5.72 -4.04 -0.02 2.23 16 5 N -0.98 -19.22 2.84 -115.66 -0.33 -19.55 16 6 C 0.24 5.80 5.35 -5.19 -0.03 5.77 16 7 C -0.54 -13.27 8.52 -34.44 -0.29 -13.56 16 8 H 0.06 1.43 6.47 -52.49 -0.34 1.09 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.88 -24.84 13.29 55.43 0.74 -24.11 16 11 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 S 2.78 52.07 6.07 -107.50 -0.65 51.41 16 16 O -1.00 -19.24 17.14 -57.17 -0.98 -20.22 16 17 O -0.98 -21.86 16.01 -57.17 -0.92 -22.78 16 18 N -1.13 -16.94 6.05 -11.65 -0.07 -17.01 16 19 C 0.15 2.41 6.39 -5.19 -0.03 2.37 16 20 C -0.04 -0.59 5.31 -104.32 -0.55 -1.14 16 21 C -0.16 -1.95 9.82 -39.44 -0.39 -2.33 16 22 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 23 N -0.49 -6.33 10.36 -13.25 -0.14 -6.46 16 24 C 0.09 1.08 11.18 -17.54 -0.20 0.88 16 25 C -0.16 -1.90 9.82 -39.44 -0.39 -2.28 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.84 7.93 -51.93 -0.41 0.42 16 31 H 0.09 1.55 8.06 -51.93 -0.42 1.13 16 32 H 0.08 1.03 7.79 -51.93 -0.40 0.62 16 33 H 0.05 1.41 6.62 -51.93 -0.34 1.07 16 34 H 0.05 1.38 6.76 -51.93 -0.35 1.03 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.41 5.10 8.65 -34.48 -0.30 4.80 16 37 H 0.10 1.67 5.90 -51.93 -0.31 1.37 16 38 H 0.09 1.59 7.71 -51.93 -0.40 1.19 16 39 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -32.70 366.73 -8.80 -41.51 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.79 Total: 6.72 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.85 Total: -3.08 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: 0.20 Total: -67.13 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -2.22 Total: -49.96 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.65 Total: 51.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.70 -8.80 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283496831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.327 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds