Wall clock time and date at job start Tue Mar 31 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00142 * 2 1 4 4 C 1.53005 * 109.47225 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47305 * 66.27808 * 4 3 2 6 6 C 1.46511 * 120.00035 * 274.70343 * 5 4 3 7 7 C 1.50699 * 109.46866 * 280.92653 * 6 5 4 8 8 H 1.08000 * 120.00167 * 3.27386 * 7 6 5 9 9 C 1.37876 * 119.99860 * 183.27904 * 7 6 5 10 10 N 1.31519 * 119.99789 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99860 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47482 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47085 * 119.99598 * 11 9 7 14 14 H 1.48501 * 109.46891 * 239.99351 * 11 9 7 15 15 S 1.65601 * 120.00099 * 94.70351 * 5 4 3 16 16 O 1.42097 * 106.40352 * 330.14003 * 15 5 4 17 17 O 1.42106 * 106.39971 * 197.21898 * 15 5 4 18 18 N 1.65599 * 107.21656 * 83.68261 * 15 5 4 19 19 C 1.46497 * 120.00411 * 64.81493 * 18 15 5 20 20 C 1.50698 * 109.47311 * 164.87347 * 19 18 15 21 21 C 1.38676 * 120.41457 * 270.24887 * 20 19 18 22 22 C 1.38625 * 118.41640 * 180.24403 * 21 20 19 23 23 C 1.38220 * 119.16550 * 359.74801 * 22 21 20 24 24 N 1.31861 * 120.76350 * 0.02562 * 23 22 21 25 25 C 1.31885 * 121.72038 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47599 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47326 * 299.99765 * 1 2 3 28 28 H 1.08997 * 109.47730 * 59.99993 * 1 2 3 29 29 H 1.08994 * 109.47146 * 60.00099 * 3 2 1 30 30 H 1.09001 * 109.46816 * 299.99796 * 3 2 1 31 31 H 1.09000 * 109.46512 * 306.27986 * 4 3 2 32 32 H 1.08997 * 109.46774 * 186.28205 * 4 3 2 33 33 H 1.08997 * 109.46979 * 40.92214 * 6 5 4 34 34 H 1.08995 * 109.47085 * 160.92337 * 6 5 4 35 35 H 0.96995 * 119.99656 * 180.02562 * 10 9 7 36 36 H 0.97001 * 119.99600 * 244.81408 * 18 15 5 37 37 H 1.09001 * 109.47376 * 44.86731 * 19 18 15 38 38 H 1.09004 * 109.46567 * 284.86778 * 19 18 15 39 39 H 1.07999 * 120.79068 * 359.96975 * 21 20 19 40 40 H 1.08011 * 120.41855 * 179.72751 * 22 21 20 41 41 H 1.08001 * 119.62309 * 180.02562 * 23 22 21 42 42 H 1.08008 * 119.61121 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9779 0.5924 -1.2654 6 6 4.0090 -0.8641 -1.4210 7 6 5.2425 -1.4144 -0.7525 8 1 5.9064 -0.7530 -0.2158 9 6 5.5234 -2.7622 -0.8264 10 7 4.7146 -3.5676 -1.4797 11 14 7.0527 -3.4442 0.0016 12 1 7.7906 -2.3397 0.6653 13 1 6.6578 -4.4553 1.0150 14 1 7.9257 -4.0799 -1.0178 15 16 4.4428 1.5692 -2.5192 16 8 3.6959 2.7711 -2.3899 17 8 4.4186 0.7609 -3.6878 18 7 6.0281 1.9739 -2.2634 19 6 7.0628 0.9371 -2.2927 20 6 8.4191 1.5840 -2.4062 21 6 8.9702 1.8454 -3.6516 22 6 10.2226 2.4371 -3.7078 23 6 10.8735 2.7494 -2.5291 24 7 10.3168 2.4905 -1.3621 25 6 9.1272 1.9286 -1.2708 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8463 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8499 0.5496 0.8276 32 1 3.9783 2.1742 0.1118 33 1 3.1217 -1.2978 -0.9598 34 1 4.0273 -1.1159 -2.4813 35 1 4.9121 -4.5159 -1.5313 36 1 6.2716 2.8974 -2.0942 37 1 6.8987 0.2841 -3.1499 38 1 7.0156 0.3508 -1.3750 39 1 8.4383 1.5900 -4.5562 40 1 10.6842 2.6510 -4.6606 41 1 11.8493 3.2109 -2.5642 42 1 8.7034 1.7313 -0.2971 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283596746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:03 Heat of formation + Delta-G solvation = -83.695369 kcal Electronic energy + Delta-G solvation = -27057.696809 eV Core-core repulsion = 23164.992158 eV Total energy + Delta-G solvation = -3892.704651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.17025 -37.71251 -36.68924 -35.51506 -35.25421 -35.22105 -32.56487 -32.27611 -31.07822 -29.47125 -26.77791 -25.84159 -25.63293 -23.56384 -22.84290 -21.98629 -21.71853 -18.91833 -17.41847 -17.19201 -16.91012 -16.55456 -16.28225 -15.96098 -15.69501 -15.64405 -14.87644 -14.78906 -14.44518 -14.28911 -13.80892 -13.53623 -13.20709 -13.05278 -12.85123 -12.63025 -12.35391 -12.06330 -11.94410 -11.87772 -11.66624 -11.48271 -11.27631 -11.20673 -11.07577 -10.86178 -10.62696 -10.40939 -10.04740 -9.85379 -9.77174 -9.47128 -9.27121 -9.09266 -9.07792 -8.44729 -8.00788 -6.06528 -4.12346 0.94169 1.21635 1.37782 3.25777 3.34514 3.35135 3.48159 3.83035 4.14036 4.19494 4.38242 4.40209 4.76894 4.80683 4.97902 5.00183 5.11571 5.27463 5.35681 5.44048 5.45272 5.55216 5.58434 5.67111 5.71995 5.80880 5.83922 5.94102 5.96689 6.06486 6.24197 6.34727 6.36909 6.58879 6.67380 7.23003 7.49690 7.55760 7.58229 7.78296 7.92418 7.92540 8.22699 8.91802 9.52246 11.01453 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.005198 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.802460 B = 5385.821208 C = 7137.428071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.137 3.863 5 N -0.984 5.984 6 C 0.242 3.758 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.885 5.885 11 Si 0.887 3.113 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 S 2.782 3.218 16 O -1.002 7.002 17 O -0.976 6.976 18 N -1.128 6.128 19 C 0.160 3.840 20 C -0.138 4.138 21 C -0.060 4.060 22 C -0.177 4.177 23 C 0.093 3.907 24 N -0.488 5.488 25 C 0.113 3.887 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.263 0.737 36 H 0.407 0.593 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 11.653 0.020 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.825 5.825 6 C 0.120 3.880 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.524 5.524 11 Si 0.714 3.286 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.210 1.210 15 S 2.790 3.210 16 O -0.986 6.986 17 O -0.959 6.959 18 N -0.886 5.886 19 C 0.034 3.966 20 C -0.142 4.142 21 C -0.087 4.087 22 C -0.197 4.197 23 C -0.064 4.064 24 N -0.196 5.196 25 C -0.044 4.044 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.238 0.762 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.505 11.549 -0.057 12.069 hybrid contribution 0.561 -0.251 0.052 0.617 sum 4.066 11.298 -0.004 12.007 Atomic orbital electron populations 1.22696 0.82412 1.02408 0.99096 1.88101 1.18391 1.27065 1.95149 1.23117 0.95411 0.85175 0.99921 1.21048 0.91323 0.97932 0.88701 1.57636 1.78464 1.19664 1.26748 1.19343 0.98346 0.71481 0.98833 1.21555 1.08663 0.93042 1.34373 0.91952 1.24920 0.96569 0.96994 0.95234 1.69951 1.36772 1.04406 1.41229 0.86636 0.83224 0.79319 0.79380 1.19618 1.21006 1.21007 1.01861 0.72588 0.72375 0.74162 1.93546 1.69428 1.47971 1.87647 1.93582 1.86263 1.69712 1.46389 1.56103 1.25691 1.16270 1.90556 1.20275 0.82112 0.88686 1.05486 1.21076 0.98133 1.00695 0.94251 1.21666 0.94639 0.94342 0.98068 1.22144 0.96202 1.01220 1.00096 1.22762 0.99494 0.96304 0.87813 1.67732 1.11224 1.12148 1.28528 1.22819 0.89881 0.92985 0.98719 0.89879 0.94826 0.94627 0.93264 0.93097 0.88943 0.90541 0.92788 0.93074 0.92747 0.76158 0.89086 0.88295 0.84464 0.84855 0.83007 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.69 9.07 -35.23 -0.32 -7.01 16 3 C 0.04 0.68 6.28 37.16 0.23 0.91 16 4 C 0.14 2.28 5.72 -4.04 -0.02 2.25 16 5 N -0.98 -19.35 2.84 -115.66 -0.33 -19.67 16 6 C 0.24 5.83 5.35 -5.19 -0.03 5.81 16 7 C -0.54 -13.32 8.52 -34.44 -0.29 -13.62 16 8 H 0.06 1.45 6.47 -52.49 -0.34 1.11 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 11 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 S 2.78 52.31 6.07 -107.50 -0.65 51.66 16 16 O -1.00 -19.37 17.14 -57.17 -0.98 -20.35 16 17 O -0.98 -21.94 16.01 -57.17 -0.92 -22.85 16 18 N -1.13 -17.05 6.05 -11.66 -0.07 -17.12 16 19 C 0.16 2.51 6.36 -5.20 -0.03 2.48 16 20 C -0.14 -1.88 5.29 -104.48 -0.55 -2.43 16 21 C -0.06 -0.73 9.86 -39.28 -0.39 -1.12 16 22 C -0.18 -1.83 10.11 -39.44 -0.40 -2.23 16 23 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 24 N -0.49 -6.60 10.36 -13.25 -0.14 -6.73 16 25 C 0.11 1.53 10.86 -17.55 -0.19 1.34 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.84 7.94 -51.93 -0.41 0.43 16 31 H 0.09 1.57 8.06 -51.93 -0.42 1.15 16 32 H 0.08 1.05 7.79 -51.93 -0.40 0.64 16 33 H 0.05 1.41 6.62 -51.93 -0.34 1.07 16 34 H 0.05 1.38 6.76 -51.93 -0.35 1.03 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.41 5.14 8.65 -34.47 -0.30 4.85 16 37 H 0.09 1.55 7.71 -51.93 -0.40 1.15 16 38 H 0.10 1.66 5.89 -51.93 -0.31 1.36 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -32.82 366.69 -8.81 -41.63 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.79 Total: 6.56 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.86 Total: -2.59 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: 0.20 Total: -67.76 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -2.22 Total: -50.21 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 52.31 SS G_CDS: -0.65 Total: 51.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.82 -8.81 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283596746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.063 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds