Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47254 * 2 1 4 4 C 1.50705 * 109.47321 * 239.99666 * 2 1 3 5 5 H 1.07999 * 119.99814 * 274.09314 * 4 2 1 6 6 C 1.37871 * 119.99927 * 94.09280 * 4 2 1 7 7 N 1.31506 * 120.00159 * 183.30773 * 6 4 2 8 8 Si 1.86807 * 119.99811 * 3.30581 * 6 4 2 9 9 H 1.48493 * 109.47147 * 93.01351 * 8 6 4 10 10 H 1.48502 * 109.47020 * 213.00969 * 8 6 4 11 11 H 1.48496 * 109.47089 * 333.00535 * 8 6 4 12 12 N 1.46507 * 109.46881 * 119.99830 * 2 1 3 13 13 C 1.46501 * 120.00115 * 60.00251 * 12 2 1 14 14 S 1.65597 * 120.00018 * 239.99652 * 12 2 1 15 15 O 1.42107 * 106.40248 * 328.95522 * 14 12 2 16 16 O 1.42094 * 106.40512 * 196.03592 * 14 12 2 17 17 N 1.65596 * 107.21539 * 82.49361 * 14 12 2 18 18 C 1.46502 * 120.00124 * 66.18769 * 17 14 12 19 19 C 1.50708 * 112.84814 * 53.17666 * 18 17 14 20 20 N 1.30518 * 126.34331 * 226.53229 * 19 18 17 21 21 N 1.28593 * 109.66992 * 179.97438 * 20 19 18 22 22 C 1.30522 * 109.67681 * 0.02562 * 21 20 19 23 23 N 1.35490 * 126.34509 * 46.48725 * 19 18 17 24 24 H 0.96998 * 126.98312 * 359.78311 * 23 19 18 25 25 C 1.53773 * 113.69330 * 184.44335 * 18 17 14 26 26 C 1.53780 * 87.08054 * 89.12607 * 25 18 17 27 27 C 1.53775 * 113.61442 * 281.98445 * 18 17 14 28 28 H 1.08998 * 109.47234 * 186.13562 * 1 2 3 29 29 H 1.09005 * 109.47108 * 306.13316 * 1 2 3 30 30 H 1.08997 * 109.47365 * 66.13630 * 1 2 3 31 31 H 0.97007 * 120.00333 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47166 * 266.67753 * 13 12 2 33 33 H 1.09005 * 109.46892 * 26.67751 * 13 12 2 34 34 H 1.08997 * 109.47126 * 146.67292 * 13 12 2 35 35 H 0.96999 * 120.00326 * 246.18263 * 17 14 12 36 36 H 1.07994 * 126.35055 * 180.02562 * 22 21 20 37 37 H 1.09005 * 113.61451 * 203.67428 * 25 18 17 38 38 H 1.09003 * 113.61561 * 334.57904 * 25 18 17 39 39 H 1.08992 * 113.61484 * 270.88162 * 26 25 18 40 40 H 1.09006 * 113.61247 * 139.97641 * 26 25 18 41 41 H 1.08993 * 113.61606 * 25.34010 * 27 18 17 42 42 H 1.08997 * 113.61698 * 156.16420 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1494 -1.7841 -1.2241 6 6 2.3425 0.0101 -2.3642 7 7 2.7186 -0.6151 -3.4583 8 14 2.2284 1.8746 -2.3462 9 1 3.5529 2.4482 -1.9977 10 1 1.8172 2.3583 -3.6886 11 1 1.2241 2.2993 -1.3381 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7133 1.0696 1.5416 16 8 3.5778 -0.8802 3.0995 17 7 1.9608 0.9756 3.2767 18 6 1.0462 0.2732 4.1802 19 6 1.7468 -0.7345 5.0548 20 7 1.3637 -1.9616 5.2807 21 7 2.1973 -2.5363 6.0735 22 6 3.1498 -1.7018 6.3898 23 7 2.8915 -0.5347 5.7516 24 1 3.4205 0.2776 5.7844 25 6 0.1016 1.2085 4.9532 26 6 -0.8739 1.0704 3.7724 27 6 -0.2049 -0.2831 3.4801 28 1 -0.3633 -1.0217 0.1098 29 1 -0.3633 0.6060 0.8300 30 1 -0.3634 0.4157 -0.9398 31 1 2.9365 -0.1081 -4.2561 32 1 0.7701 -2.1444 2.0492 33 1 1.4718 -2.5820 0.4730 34 1 2.4878 -2.5968 1.9345 35 1 1.9750 1.9453 3.2586 36 1 3.9889 -1.9043 7.0387 37 1 -0.2738 0.7795 5.8822 38 1 0.4937 2.2177 5.0798 39 1 -0.7192 1.8122 2.9891 40 1 -1.9174 0.9851 4.0759 41 1 -0.0603 -0.4781 2.4176 42 1 -0.6632 -1.1208 4.0057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285485376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = 39.026821 kcal Electronic energy + Delta-G solvation = -28774.284218 eV Core-core repulsion = 24919.193952 eV Total energy + Delta-G solvation = -3855.090266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.03039 -39.50800 -36.84392 -36.37921 -35.42864 -33.72148 -32.65971 -32.48833 -30.61578 -29.96207 -26.28563 -25.58399 -25.45751 -25.12349 -22.58547 -21.69516 -20.75315 -19.87895 -19.22071 -18.20611 -17.50385 -17.42398 -16.50680 -16.10431 -15.73500 -15.48753 -15.40891 -14.83708 -14.44723 -14.31480 -13.61266 -13.21186 -12.89246 -12.79669 -12.54527 -12.48434 -12.00299 -11.89528 -11.81539 -11.67677 -11.51983 -11.43052 -11.32518 -11.18621 -11.06634 -10.86616 -10.75276 -10.65437 -10.58913 -10.39099 -10.27664 -9.83923 -9.74662 -9.37183 -9.07935 -8.64441 -8.10259 -6.19263 -4.19598 0.95848 1.86445 2.83530 2.93620 3.17890 3.27140 3.31152 3.37302 3.81013 4.14383 4.20738 4.32453 4.33175 4.64258 4.68960 4.79346 4.97979 5.14088 5.29403 5.40602 5.54122 5.59553 5.61440 5.71715 5.76232 5.90431 5.98700 6.08580 6.13660 6.17394 6.27160 6.36157 6.47990 6.54514 6.63387 6.81016 6.94715 7.09524 7.13893 7.46588 7.61840 8.40646 8.80662 8.86088 9.41716 10.92821 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.005191 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.480322 B = 5392.674287 C = 5729.823975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.236 3.764 3 H 0.051 0.949 4 C -0.516 4.516 5 H 0.083 0.917 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.867 3.133 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.262 1.262 12 N -0.977 5.977 13 C 0.095 3.905 14 S 2.764 3.236 15 O -0.974 6.974 16 O -0.984 6.984 17 N -1.116 6.116 18 C 0.233 3.767 19 C 0.185 3.815 20 N -0.274 5.274 21 N -0.297 5.297 22 C 0.160 3.840 23 N -0.561 5.561 24 H 0.424 0.576 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.148 4.148 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.267 0.733 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.416 0.584 36 H 0.216 0.784 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 5.714 18.857 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.133 3.867 3 H 0.069 0.931 4 C -0.556 4.556 5 H 0.101 0.899 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.694 3.306 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.820 5.820 13 C -0.051 4.051 14 S 2.774 3.226 15 O -0.958 6.958 16 O -0.967 6.967 17 N -0.873 5.873 18 C 0.140 3.860 19 C -0.086 4.086 20 N -0.116 5.116 21 N -0.137 5.137 22 C -0.129 4.129 23 N -0.170 5.170 24 H 0.262 0.738 25 C -0.163 4.163 26 C -0.173 4.173 27 C -0.187 4.187 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.250 0.750 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.877 4.092 18.692 19.746 hybrid contribution 1.062 2.988 -0.126 3.173 sum -3.815 7.079 18.566 20.233 Atomic orbital electron populations 1.22347 0.98148 1.00808 0.99706 1.19128 0.91260 0.92847 0.83489 0.93089 1.21133 1.44200 0.96179 0.94077 0.89897 1.24978 0.93918 0.98326 0.95386 1.69883 1.44577 1.36015 1.01993 0.87002 0.79668 0.86516 0.77457 1.19494 1.21067 1.18646 1.57792 1.69769 1.20034 1.34371 1.21421 0.99668 0.81496 1.02546 1.02573 0.73865 0.73254 0.72889 1.93634 1.68552 1.63041 1.70573 1.93554 1.74544 1.59480 1.69132 1.56299 1.57239 1.18903 1.54831 1.19135 0.86962 0.90520 0.89367 1.24561 0.88328 0.96342 0.99330 1.74120 1.22653 1.02166 1.12700 1.74195 1.02147 1.25353 1.12022 1.26307 1.02450 0.82810 1.01366 1.43809 1.21476 1.15118 1.36644 0.73773 1.23234 0.95708 0.98748 0.98616 1.22803 0.98959 0.97938 0.97566 1.23711 0.92939 0.98292 1.03742 0.92689 0.95246 0.92398 0.92341 0.93571 0.89640 0.91927 0.74966 0.76714 0.88521 0.90367 0.89429 0.90387 0.87831 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.13 37.15 0.30 -2.49 16 2 C 0.24 5.21 2.17 -69.08 -0.15 5.06 16 3 H 0.05 1.18 4.22 -51.93 -0.22 0.96 16 4 C -0.52 -13.77 8.70 -34.44 -0.30 -14.07 16 5 H 0.08 2.38 6.87 -52.49 -0.36 2.02 16 6 C 0.08 2.19 5.47 -17.83 -0.10 2.09 16 7 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 8 Si 0.87 21.08 27.14 -169.99 -4.61 16.47 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -5.82 6.53 56.52 0.37 -5.45 16 12 N -0.98 -19.18 2.19 -115.85 -0.25 -19.43 16 13 C 0.09 1.72 9.11 59.85 0.55 2.26 16 14 S 2.76 50.78 6.10 -107.50 -0.66 50.12 16 15 O -0.97 -21.61 16.96 -57.17 -0.97 -22.58 16 16 O -0.98 -18.96 13.82 -57.17 -0.79 -19.75 16 17 N -1.12 -14.36 5.71 0.26 0.00 -14.36 16 18 C 0.23 2.75 1.33 -132.16 -0.18 2.57 16 19 C 0.19 2.51 5.28 -154.99 -0.82 1.70 16 20 N -0.27 -4.37 11.44 32.80 0.38 -3.99 16 21 N -0.30 -4.63 12.21 29.69 0.36 -4.26 16 22 C 0.16 1.89 13.19 -89.94 -1.19 0.70 16 23 N -0.56 -6.45 5.39 -11.36 -0.06 -6.51 16 24 H 0.42 3.64 8.96 -40.82 -0.37 3.27 16 25 C -0.12 -1.04 7.33 -25.92 -0.19 -1.23 16 26 C -0.14 -1.22 7.99 -25.92 -0.21 -1.43 16 27 C -0.15 -1.75 6.52 -25.92 -0.17 -1.92 16 28 H 0.05 0.97 7.47 -51.93 -0.39 0.58 16 29 H 0.03 0.45 7.03 -51.93 -0.36 0.08 16 30 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 0.73 6.08 -51.93 -0.32 0.42 16 33 H 0.08 1.63 6.60 -51.93 -0.34 1.28 16 34 H 0.06 1.17 7.11 -51.93 -0.37 0.81 16 35 H 0.42 4.26 8.76 -34.47 -0.30 3.96 16 36 H 0.22 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.40 2.86 -51.93 -0.15 1.25 16 42 H 0.11 1.29 7.61 -51.93 -0.40 0.89 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -35.84 341.42 -8.40 -44.24 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.27 Total: 7.22 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.45 Total: -6.76 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: 1.20 Total: -74.11 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.76 Total: -42.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.61 Total: 16.47 kcal Atomic # 16 Polarization: 50.78 SS G_CDS: -0.66 Total: 50.12 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.84 -8.40 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285485376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.269 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds