Wall clock time and date at job start Tue Mar 31 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47024 * 315.02860 * 3 2 1 5 5 C 1.37096 * 119.99616 * 264.04364 * 4 3 2 6 6 H 1.08001 * 119.99488 * 199.37150 * 5 4 3 7 7 C 1.38945 * 120.00232 * 19.37153 * 5 4 3 8 8 N 1.31412 * 120.00187 * 20.46742 * 7 5 4 9 9 Si 1.86804 * 119.99814 * 200.46776 * 7 5 4 10 10 H 1.48495 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46898 * 119.99701 * 9 7 5 12 12 H 1.48501 * 109.47039 * 239.99685 * 9 7 5 13 13 C 1.34773 * 119.99887 * 84.04231 * 4 3 2 14 14 O 1.21290 * 119.99921 * 183.72991 * 13 4 3 15 15 C 1.50697 * 120.00110 * 3.73527 * 13 4 3 16 16 C 1.53042 * 109.46233 * 149.47485 * 15 13 4 17 17 C 1.53191 * 109.31210 * 181.38554 * 16 15 13 18 18 N 1.46928 * 108.77440 * 305.35513 * 17 16 15 19 19 S 1.65598 * 120.63505 * 233.58839 * 18 17 16 20 20 O 1.42094 * 106.40498 * 203.54567 * 19 18 17 21 21 O 1.42103 * 106.39957 * 336.46510 * 19 18 17 22 22 N 1.65594 * 107.21887 * 90.00163 * 19 18 17 23 23 C 1.46501 * 120.00078 * 65.00226 * 22 19 18 24 24 C 1.46929 * 118.73450 * 53.86839 * 18 17 16 25 25 C 1.53045 * 109.46015 * 269.53861 * 15 13 4 26 26 H 4.40650 * 5.51401 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46860 * 195.02879 * 3 2 1 28 28 H 1.09001 * 109.46836 * 75.02854 * 3 2 1 29 29 H 0.97001 * 119.99722 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.46545 * 29.49531 * 15 13 4 31 31 H 1.08995 * 109.50164 * 61.42619 * 16 15 13 32 32 H 1.09005 * 109.49245 * 301.32854 * 16 15 13 33 33 H 1.09008 * 109.58466 * 185.57315 * 17 16 15 34 34 H 1.09000 * 109.70763 * 65.22030 * 17 16 15 35 35 H 0.96999 * 120.00366 * 245.00048 * 22 19 18 36 36 H 1.09006 * 109.46650 * 300.00254 * 23 22 19 37 37 H 1.08996 * 109.47212 * 59.99466 * 23 22 19 38 38 H 1.08996 * 109.47128 * 180.02562 * 23 22 19 39 39 H 1.08994 * 109.58704 * 65.92300 * 24 18 17 40 40 H 1.09002 * 109.58674 * 186.35026 * 24 18 17 41 41 H 1.09011 * 109.49457 * 298.56821 * 25 15 13 42 42 H 1.08999 * 109.49375 * 58.65702 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9763 0.9762 5 6 3.4792 -0.5696 2.2394 6 1 4.1177 -1.1899 2.8509 7 6 3.0069 0.6404 2.7327 8 7 1.9446 1.1986 2.1971 9 14 3.8820 1.4736 4.1573 10 1 5.0416 0.6468 4.5776 11 1 4.3579 2.8139 3.7301 12 1 2.9416 1.6223 5.2970 13 6 3.2457 -2.2747 0.6325 14 8 3.5856 -3.0941 1.4597 15 6 2.9477 -2.7085 -0.7796 16 6 3.8089 -3.9235 -1.1323 17 6 3.5285 -4.3402 -2.5795 18 7 2.0841 -4.5582 -2.7375 19 16 1.5081 -5.9847 -3.3503 20 8 0.2221 -5.7019 -3.8844 21 8 2.5629 -6.5460 -4.1195 22 7 1.2681 -7.0069 -2.0698 23 6 0.2563 -6.6898 -1.0589 24 6 1.1608 -3.4840 -2.3473 25 6 1.4675 -3.0789 -0.8976 26 1 -1.0499 0.0000 0.0003 27 1 3.0089 0.9933 0.2665 28 1 3.0094 -0.2647 -0.9928 29 1 1.6152 2.0436 2.5413 30 1 3.1733 -1.8921 -1.4656 31 1 3.5660 -4.7484 -0.4626 32 1 4.8626 -3.6658 -1.0256 33 1 4.0640 -5.2627 -2.8044 34 1 3.8558 -3.5530 -3.2587 35 1 1.7975 -7.8157 -1.9889 36 1 0.4962 -5.7344 -0.5920 37 1 -0.7233 -6.6266 -1.5327 38 1 0.2435 -7.4718 -0.2998 39 1 1.2985 -2.6266 -3.0061 40 1 0.1335 -3.8412 -2.4189 41 1 1.2465 -3.9118 -0.2299 42 1 0.8547 -2.2201 -0.6236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286104568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:06 Heat of formation + Delta-G solvation = -39.875990 kcal Electronic energy + Delta-G solvation = -27601.297426 eV Core-core repulsion = 23710.492926 eV Total energy + Delta-G solvation = -3890.804500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.49131 -37.48389 -37.35381 -35.91652 -35.21350 -35.04738 -32.68182 -31.74280 -31.25573 -30.93877 -26.65612 -26.09683 -25.62456 -23.96922 -23.19611 -20.97544 -19.50985 -18.77705 -18.13292 -17.88334 -17.43394 -16.64828 -16.38184 -16.30797 -15.35205 -14.78602 -14.54095 -14.32443 -14.32049 -14.15314 -13.82638 -13.43651 -13.31414 -13.19816 -12.87994 -12.62311 -12.29604 -12.23367 -12.16219 -12.04010 -11.80738 -11.75374 -11.59075 -11.21859 -11.09490 -11.01700 -10.58922 -10.44751 -10.36423 -10.20181 -9.75896 -9.39421 -9.30123 -9.12033 -8.87548 -8.34265 -7.89784 -6.37072 -3.91678 0.53350 2.77731 3.09708 3.22501 3.28450 3.46964 3.61769 3.84386 3.99935 4.13880 4.27479 4.61441 4.73753 4.90998 4.95595 5.11205 5.24390 5.27843 5.31952 5.37232 5.42187 5.49823 5.57139 5.61940 5.66050 5.77083 5.80083 5.98348 6.01354 6.11752 6.31412 6.36474 6.40418 6.59196 6.62778 6.69627 6.84066 6.97900 7.51650 8.01938 8.38197 8.74566 9.09814 9.31591 9.87279 10.63275 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023763 B = 0.003532 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.024164 B = 7924.779774 C = 8267.214484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.108 4.108 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.315 4.315 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.862 5.862 9 Si 0.919 3.081 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.456 3.544 14 O -0.583 6.583 15 C -0.097 4.097 16 C -0.113 4.113 17 C 0.124 3.876 18 N -1.003 6.003 19 S 2.790 3.210 20 O -0.979 6.979 21 O -0.982 6.982 22 N -1.131 6.131 23 C 0.084 3.916 24 C 0.123 3.877 25 C -0.128 4.128 26 H 0.199 0.801 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -8.403 -9.593 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.109 4.109 3 C 0.106 3.894 4 N -0.158 5.158 5 C -0.442 4.442 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.500 5.500 9 Si 0.746 3.254 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.244 3.756 14 O -0.467 6.467 15 C -0.119 4.119 16 C -0.152 4.152 17 C -0.001 4.001 18 N -0.844 5.844 19 S 2.796 3.204 20 O -0.962 6.962 21 O -0.966 6.966 22 N -0.891 5.891 23 C -0.063 4.063 24 C -0.002 4.002 25 C -0.167 4.167 26 H 0.216 0.784 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.165 -8.643 -10.052 13.432 hybrid contribution 0.245 0.491 1.409 1.512 sum -1.920 -8.152 -8.643 12.035 Atomic orbital electron populations 1.24241 0.95339 1.03493 1.04841 1.23081 0.94255 0.97297 0.96289 1.18263 0.84403 0.96017 0.90685 1.43725 1.55879 1.04653 1.11516 1.19670 1.28472 1.04208 0.91871 0.88009 1.25287 0.95034 0.98086 0.98806 1.70066 1.18912 1.18646 1.42359 0.85981 0.79647 0.79054 0.80721 1.19265 1.20625 1.20915 1.20009 0.83805 0.82392 0.89363 1.90512 1.52438 1.51215 1.52533 1.21127 0.96027 0.98263 0.96486 1.21722 0.99994 0.98458 0.95070 1.21489 0.78721 1.02372 0.97552 1.58005 1.14151 1.30945 1.81294 1.01778 0.73162 0.72334 0.73091 1.93600 1.41365 1.84587 1.76686 1.93605 1.57247 1.77925 1.67847 1.55736 1.50484 1.38418 1.44480 1.21503 0.90793 1.02422 0.91583 1.21591 0.92176 0.90272 0.96143 1.22068 0.96010 1.03034 0.95631 0.78420 0.87552 0.91817 0.92200 0.90052 0.90563 0.90681 0.89447 0.90906 0.75263 0.91696 0.91705 0.90169 0.90641 0.89350 0.91287 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.92 18.29 29.55 0.54 -4.38 16 2 C -0.11 -2.20 9.55 -37.12 -0.35 -2.56 16 3 C 0.23 4.71 4.93 -6.82 -0.03 4.68 16 4 N -0.44 -10.40 2.60 -117.93 -0.31 -10.70 16 5 C -0.31 -8.29 9.28 -14.94 -0.14 -8.43 16 6 H 0.10 2.85 7.44 -52.49 -0.39 2.46 16 7 C 0.03 0.81 4.87 -17.47 -0.09 0.72 16 8 N -0.86 -21.74 9.49 55.50 0.53 -21.21 16 9 Si 0.92 19.85 29.60 -169.99 -5.03 14.82 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.46 10.18 6.61 -10.99 -0.07 10.11 16 14 O -0.58 -15.13 15.90 5.55 0.09 -15.04 16 15 C -0.10 -1.60 1.85 -91.73 -0.17 -1.77 16 16 C -0.11 -1.62 4.94 -26.61 -0.13 -1.75 16 17 C 0.12 1.45 6.37 -3.71 -0.02 1.43 16 18 N -1.00 -12.06 3.34 -113.27 -0.38 -12.44 16 19 S 2.79 34.47 6.15 -107.50 -0.66 33.81 16 20 O -0.98 -14.53 16.57 -57.17 -0.95 -15.48 16 21 O -0.98 -14.28 16.85 -57.17 -0.96 -15.24 16 22 N -1.13 -11.04 6.24 -16.63 -0.10 -11.15 16 23 C 0.08 0.76 11.16 59.85 0.67 1.43 16 24 C 0.12 1.51 6.41 -3.49 -0.02 1.48 16 25 C -0.13 -1.91 5.32 -26.39 -0.14 -2.05 16 26 H 0.20 3.06 7.80 -54.09 -0.42 2.63 16 27 H 0.11 2.34 6.54 -51.93 -0.34 2.00 16 28 H 0.06 1.08 5.97 -51.93 -0.31 0.76 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.08 1.22 5.97 -51.93 -0.31 0.91 16 31 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.94 7.13 -51.92 -0.37 0.57 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.41 3.25 8.96 -34.47 -0.31 2.94 16 36 H 0.06 0.64 6.65 -51.93 -0.35 0.29 16 37 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.01 7.12 -51.93 -0.37 0.64 16 41 H 0.07 1.06 6.65 -51.92 -0.35 0.72 16 42 H 0.09 1.48 4.91 -51.93 -0.25 1.23 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -33.53 349.65 -7.89 -41.42 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.42 Total: 7.05 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.26 Total: -55.50 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.82 Total: -45.76 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Atomic # 16 Polarization: 34.47 SS G_CDS: -0.66 Total: 33.81 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.53 -7.89 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286104568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.543 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds