Wall clock time and date at job start Tue Mar 31 2020 05:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99846 * 2 1 4 4 N 1.46506 * 109.46928 * 124.99884 * 3 2 1 5 5 C 1.46504 * 119.99738 * 85.00452 * 4 3 2 6 6 C 1.50692 * 109.47316 * 84.99636 * 5 4 3 7 7 H 1.08004 * 120.00217 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99796 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99926 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99731 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47251 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46798 * 120.00059 * 10 8 6 13 13 H 1.48494 * 109.47172 * 240.00371 * 10 8 6 14 14 S 1.65593 * 120.00141 * 264.99915 * 4 3 2 15 15 O 1.42098 * 106.40615 * 203.54082 * 14 4 3 16 16 O 1.42104 * 106.40292 * 336.46187 * 14 4 3 17 17 C 1.76204 * 107.21858 * 90.00260 * 14 4 3 18 18 C 1.39867 * 126.03756 * 269.68894 * 17 14 4 19 19 N 1.30842 * 108.20208 * 179.81556 * 18 17 14 20 20 N 1.40081 * 108.20276 * 0.44229 * 19 18 17 21 21 C 1.46495 * 126.03877 * 179.69635 * 20 19 18 22 22 C 1.52999 * 109.47146 * 305.02295 * 21 20 19 23 23 O 1.42904 * 109.47324 * 179.97438 * 22 21 20 24 24 C 1.42899 * 113.99758 * 180.02562 * 23 22 21 25 25 C 1.34951 * 107.92611 * 359.71490 * 20 19 18 26 26 H 1.07994 * 120.00398 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99861 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00021 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47103 * 5.00074 * 3 2 1 30 30 H 1.09000 * 109.47247 * 244.99952 * 3 2 1 31 31 H 1.08999 * 109.46904 * 205.00147 * 5 4 3 32 32 H 1.09000 * 109.47146 * 324.99586 * 5 4 3 33 33 H 0.97005 * 119.99590 * 179.97438 * 9 8 6 34 34 H 1.07999 * 125.90036 * 0.02562 * 18 17 14 35 35 H 1.08996 * 109.47384 * 65.02483 * 21 20 19 36 36 H 1.08998 * 109.47431 * 185.02701 * 21 20 19 37 37 H 1.09000 * 109.47575 * 300.00515 * 22 21 20 38 38 H 1.09005 * 109.47149 * 60.00293 * 22 21 20 39 39 H 1.09004 * 109.47744 * 59.99883 * 24 23 22 40 40 H 1.09004 * 109.47141 * 180.02562 * 24 23 22 41 41 H 1.08999 * 109.47162 * 299.99551 * 24 23 22 42 42 H 1.07996 * 126.12642 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3217 0.7268 1.0024 6 6 5.2697 1.7227 0.3857 7 1 4.9183 2.7081 0.1171 8 6 6.5860 1.3764 0.1652 9 7 7.0139 0.1767 0.4927 10 14 7.7610 2.6107 -0.5999 11 1 7.0376 3.8781 -0.8747 12 1 8.8817 2.8743 0.3379 13 1 8.2977 2.0611 -1.8707 14 16 2.5442 2.0462 2.5562 15 8 3.7470 2.4097 3.2199 16 8 1.5226 2.9793 2.2325 17 6 1.7859 0.8019 3.5470 18 6 0.4242 0.4827 3.5673 19 7 0.2457 -0.4922 4.4214 20 7 1.4885 -0.8178 4.9798 21 6 1.7364 -1.8526 5.9867 22 6 0.8385 -1.6081 7.2011 23 8 1.0799 -2.6179 8.1831 24 6 0.2870 -2.4814 9.3641 25 6 2.4169 -0.0096 4.4268 26 1 -0.5400 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 4.6874 0.4394 1.9882 32 1 4.2584 -0.1563 0.3667 33 1 7.9399 -0.0670 0.3373 34 1 -0.3462 0.9567 2.9772 35 1 1.5157 -2.8323 5.5630 36 1 2.7814 -1.8171 6.2946 37 1 1.0591 -0.6285 7.6249 38 1 -0.2066 -1.6437 6.8933 39 1 -0.7694 -2.5349 9.1008 40 1 0.5296 -3.2850 10.0595 41 1 0.4963 -1.5201 9.8332 42 1 3.4743 -0.0107 4.6466 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292624520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:44 Heat of formation + Delta-G solvation = -12.900921 kcal Electronic energy + Delta-G solvation = -26433.453652 eV Core-core repulsion = 22543.818879 eV Total energy + Delta-G solvation = -3889.634773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27695 -38.35268 -36.59937 -36.26209 -35.08186 -34.07844 -33.23157 -31.86408 -30.52616 -29.33573 -27.36639 -26.65029 -24.92658 -23.82592 -22.40350 -21.82798 -20.92039 -19.50287 -18.42473 -17.71595 -16.90780 -16.79626 -16.57673 -16.27074 -15.74720 -15.46734 -15.21639 -14.78605 -14.54539 -14.33365 -14.19638 -13.70462 -13.59936 -13.30631 -12.94958 -12.47058 -12.38627 -12.13263 -11.97387 -11.76604 -11.49397 -11.41263 -11.33682 -11.24278 -11.14154 -11.01109 -10.65733 -10.52451 -10.39632 -10.15263 -10.00521 -9.72669 -9.61491 -9.25625 -9.01732 -8.44084 -8.05679 -6.06275 -4.09570 1.12765 1.60521 2.15369 2.39181 2.56131 3.32016 3.39220 3.39849 3.45328 3.89953 4.27058 4.43918 4.50000 4.53183 4.59639 4.80233 4.86773 4.93358 4.93829 5.11006 5.20500 5.25045 5.29006 5.29243 5.30686 5.47783 5.58431 5.72746 5.76996 6.08778 6.33852 6.40397 6.42124 6.57799 6.75815 6.89842 7.07607 7.23805 7.40924 7.42483 7.61497 7.91928 8.20940 8.93464 9.55730 11.02334 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.003602 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.641352 B = 7771.769396 C = 8745.354499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C 0.145 3.855 4 N -0.979 5.979 5 C 0.257 3.743 6 C -0.526 4.526 7 H 0.062 0.938 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.284 1.284 14 S 2.715 3.285 15 O -0.949 6.949 16 O -0.978 6.978 17 C -0.808 4.808 18 C 0.139 3.861 19 N -0.300 5.300 20 N -0.366 5.366 21 C 0.130 3.870 22 C 0.051 3.949 23 O -0.390 6.390 24 C 0.034 3.966 25 C 0.184 3.816 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.194 0.806 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 -5.452 10.514 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.177 4.177 3 C 0.019 3.981 4 N -0.817 5.817 5 C 0.135 3.865 6 C -0.565 4.565 7 H 0.081 0.919 8 C -0.140 4.140 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.211 1.211 14 S 2.802 3.198 15 O -0.939 6.939 16 O -0.969 6.969 17 C -0.904 4.904 18 C -0.051 4.051 19 N -0.119 5.119 20 N -0.146 5.146 21 C 0.009 3.991 22 C -0.026 4.026 23 O -0.308 6.308 24 C -0.062 4.062 25 C 0.032 3.968 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.211 0.789 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.995 -5.815 11.441 18.989 hybrid contribution 0.916 0.397 -0.536 1.133 sum -13.079 -5.418 10.905 17.870 Atomic orbital electron populations 1.23817 0.95890 1.01572 1.02698 1.23600 0.96009 1.00161 0.97926 1.20366 0.91716 0.94266 0.91713 1.57442 1.23601 1.75949 1.24691 1.19065 0.75463 0.93874 0.98091 1.21539 0.94349 0.99939 1.40680 0.91934 1.24918 0.98039 0.95421 0.95617 1.69926 1.16548 1.19117 1.48014 0.86473 0.80921 0.81515 0.78736 1.19566 1.20866 1.21056 1.01259 0.72684 0.73180 0.72711 1.93583 1.44764 1.80944 1.74649 1.93473 1.60427 1.58887 1.84074 1.32158 1.04891 1.28921 1.24393 1.23452 0.94370 0.92506 0.94723 1.77314 1.01743 1.18170 1.14701 1.48932 1.05729 1.28183 1.31733 1.21513 1.01443 0.90109 0.86051 1.22657 0.99798 0.91552 0.88615 1.87787 1.64269 1.50675 1.28092 1.22777 0.94736 1.02015 0.86695 1.22569 0.96549 0.87229 0.90427 0.88378 0.88964 0.87284 0.89664 0.88585 0.94487 0.94615 0.92804 0.78938 0.88288 0.87111 0.92510 0.91520 0.93765 0.89173 0.93799 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 14.32 29.01 0.42 -2.11 16 2 C -0.16 -2.31 9.84 -36.03 -0.35 -2.66 16 3 C 0.15 2.46 6.12 -5.19 -0.03 2.43 16 4 N -0.98 -19.52 2.75 -116.94 -0.32 -19.84 16 5 C 0.26 6.13 5.10 -5.20 -0.03 6.10 16 6 C -0.53 -14.22 9.38 -34.44 -0.32 -14.54 16 7 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 10 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 S 2.72 52.75 5.79 -107.50 -0.62 52.12 16 15 O -0.95 -21.65 16.82 -57.17 -0.96 -22.62 16 16 O -0.98 -19.63 16.42 -57.17 -0.94 -20.57 16 17 C -0.81 -13.07 6.17 -40.02 -0.25 -13.31 16 18 C 0.14 2.05 11.81 -17.36 -0.21 1.85 16 19 N -0.30 -4.36 12.42 30.62 0.38 -3.98 16 20 N -0.37 -4.82 3.68 -61.37 -0.23 -5.04 16 21 C 0.13 1.28 6.88 -4.05 -0.03 1.26 16 22 C 0.05 0.49 6.12 37.16 0.23 0.71 16 23 O -0.39 -3.73 10.70 -35.23 -0.38 -4.10 16 24 C 0.03 0.23 11.01 101.05 1.11 1.34 16 25 C 0.18 2.66 11.19 -17.22 -0.19 2.47 16 26 H 0.10 1.13 7.84 -52.49 -0.41 0.72 16 27 H 0.09 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.09 1.35 6.57 -51.93 -0.34 1.01 16 30 H 0.10 1.66 8.11 -51.93 -0.42 1.23 16 31 H 0.04 0.92 7.61 -51.93 -0.40 0.53 16 32 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -33.70 379.64 -7.56 -41.26 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.18 Total: 0.20 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 0.25 Total: -14.85 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.57 Total: -53.54 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -2.28 Total: -47.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 52.75 SS G_CDS: -0.62 Total: 52.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.70 -7.56 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292624520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.359 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds