Wall clock time and date at job start Tue Mar 31 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86796 * 120.00137 * 2 1 4 4 H 1.48507 * 109.47251 * 240.00006 * 3 2 1 5 5 H 1.48501 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46989 * 119.99967 * 3 2 1 7 7 C 1.38650 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00414 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00229 * 185.06037 * 9 7 2 11 11 C 1.38882 * 120.06536 * 354.45977 * 10 9 7 12 12 C 1.38105 * 119.92877 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06854 * 0.03231 * 12 11 10 14 14 C 1.50703 * 119.92875 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47194 * 90.00066 * 14 13 12 16 16 O 1.21274 * 119.99877 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00276 * 180.02562 * 15 14 13 18 18 C 1.47626 * 121.94195 * 180.02562 * 17 15 14 19 19 C 1.53568 * 108.73304 * 223.46039 * 18 17 15 20 20 C 1.53408 * 109.65126 * 297.57732 * 19 18 17 21 21 N 1.46020 * 108.92309 * 49.08921 * 20 19 18 22 22 N 1.39490 * 130.07495 * 161.00199 * 21 20 19 23 23 N 1.29380 * 106.49896 * 180.16415 * 22 21 20 24 24 N 1.28904 * 110.38077 * 359.94472 * 23 22 21 25 25 C 1.30226 * 110.25660 * 359.97438 * 24 23 22 26 26 C 1.38296 * 120.13817 * 0.24868 * 13 12 11 27 27 C 1.38104 * 120.07283 * 359.45034 * 26 13 12 28 28 H 0.96999 * 119.99545 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.03470 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.96347 * 180.02562 * 12 11 10 31 31 H 1.09004 * 109.46994 * 329.99639 * 14 13 12 32 32 H 1.09004 * 109.46812 * 210.00082 * 14 13 12 33 33 H 1.09000 * 109.60395 * 343.20897 * 18 17 15 34 34 H 1.09001 * 109.60683 * 103.70094 * 18 17 15 35 35 H 1.08996 * 109.59008 * 177.46185 * 19 18 17 36 36 H 1.08998 * 109.39399 * 57.56754 * 19 18 17 37 37 H 1.09003 * 109.58249 * 289.22114 * 20 19 18 38 38 H 1.08998 * 109.58383 * 168.95231 * 20 19 18 39 39 H 1.08001 * 119.96438 * 179.70824 * 26 13 12 40 40 H 1.07993 * 120.03866 * 180.28027 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0921 12 6 4.2023 -4.5973 0.1997 13 6 3.5686 -5.8206 0.3202 14 6 4.3849 -7.0820 0.4369 15 6 4.6642 -7.3670 1.8901 16 8 4.2425 -6.6192 2.7466 17 7 5.3836 -8.4523 2.2378 18 6 5.6821 -8.7726 3.6477 19 6 7.1534 -9.1991 3.7557 20 6 7.3842 -10.4702 2.9283 21 7 6.8144 -10.2790 1.5976 22 7 7.0628 -10.9630 0.4075 23 7 6.3123 -10.4167 -0.4938 24 7 5.6191 -9.4588 0.0195 25 6 5.8881 -9.3371 1.2879 26 6 2.1873 -5.8893 0.3282 27 6 1.4365 -4.7346 0.2271 28 1 -0.4849 0.8401 0.0004 29 1 3.9525 -2.4846 -0.0025 30 1 5.2812 -4.5472 0.1897 31 1 5.3271 -6.9557 -0.0963 32 1 3.8309 -7.9147 0.0033 33 1 5.5109 -7.8921 4.2669 34 1 5.0401 -9.5878 3.9814 35 1 7.4013 -9.3958 4.7987 36 1 7.7907 -8.3999 3.3773 37 1 6.8991 -11.3162 3.4153 38 1 8.4538 -10.6618 2.8435 39 1 1.6953 -6.8465 0.4176 40 1 0.3579 -4.7884 0.2379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294034486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:18 Heat of formation + Delta-G solvation = 103.738647 kcal Electronic energy + Delta-G solvation = -27002.880112 eV Core-core repulsion = 23015.152010 eV Total energy + Delta-G solvation = -3987.728102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.58647 -40.53326 -38.95720 -37.93907 -36.45722 -35.27707 -32.71997 -32.35175 -31.70840 -31.26866 -30.12158 -27.80928 -26.30400 -25.17128 -24.72785 -23.85421 -22.09990 -21.92835 -20.64053 -19.87354 -17.99050 -17.89478 -17.84416 -17.27928 -16.90007 -16.72379 -15.83116 -15.30517 -14.81388 -14.62139 -14.48547 -14.22413 -14.10361 -13.68296 -13.59958 -13.53682 -13.33208 -12.76777 -12.65890 -12.51840 -12.43351 -12.08582 -11.82940 -11.58951 -11.50954 -11.34409 -11.25434 -10.86805 -10.84438 -10.67967 -10.60032 -10.41485 -10.23410 -9.36277 -9.29930 -8.79352 -8.12137 -7.14492 -6.41889 -4.00455 0.57289 1.07563 1.80382 1.95500 2.28384 2.36316 2.44444 3.15157 3.16286 3.19055 3.36406 3.73179 3.97646 3.99765 4.05291 4.17913 4.47581 4.57150 4.59422 4.80635 4.90157 4.99481 5.04252 5.12289 5.15686 5.19604 5.32328 5.37971 5.42022 5.73865 5.75234 5.85619 5.92409 6.24686 6.45168 6.54177 6.75303 6.95236 7.08793 7.27216 7.39727 7.47841 7.59337 7.86519 8.03311 8.11679 9.03676 9.74230 10.76140 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.025352 B = 0.002404 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.189425 B =11644.491734 C =11945.643219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.158 3.842 11 C -0.232 4.232 12 C -0.055 4.055 13 C -0.176 4.176 14 C -0.070 4.070 15 C 0.532 3.468 16 O -0.476 6.476 17 N -0.535 5.535 18 C 0.094 3.906 19 C -0.155 4.155 20 C 0.120 3.880 21 N -0.399 5.399 22 N -0.073 5.073 23 N -0.023 5.023 24 N -0.334 5.334 25 C 0.476 3.524 26 C -0.057 4.057 27 C -0.191 4.191 28 H 0.270 0.730 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.810 -20.698 8.756 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.177 4.177 14 C -0.110 4.110 15 C 0.323 3.677 16 O -0.343 6.343 17 N -0.271 5.271 18 C -0.027 4.027 19 C -0.194 4.194 20 C -0.002 4.002 21 N -0.203 5.203 22 N -0.061 5.061 23 N -0.018 5.018 24 N -0.191 5.191 25 C 0.111 3.889 26 C -0.075 4.075 27 C -0.210 4.210 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.204 -20.510 8.032 26.764 hybrid contribution 0.729 0.924 1.107 1.616 sum 15.934 -19.586 9.139 26.852 Atomic orbital electron populations 1.70034 1.05947 1.27737 1.46083 1.25282 0.95837 0.98807 0.96580 0.85789 0.78702 0.79814 0.79169 1.19493 1.20290 1.19533 1.21283 0.91780 0.80860 1.52846 0.89122 1.83977 1.34348 1.11450 1.78255 1.19390 0.90278 0.88029 0.91879 1.21098 0.93807 0.98723 1.11546 1.20516 0.98019 0.91754 0.97085 1.18668 0.93258 0.92531 1.13237 1.20515 1.02270 0.98693 0.89511 1.21723 0.75090 0.77188 0.93727 1.90800 1.46838 1.44287 1.52414 1.45923 1.52870 1.23416 1.04939 1.22240 0.95597 1.04373 0.80470 1.22463 0.97135 0.97152 1.02646 1.22111 1.01577 1.00039 0.76495 1.51470 1.31198 1.26245 1.11419 1.82453 1.20693 1.16972 0.85955 1.78413 1.01380 1.01436 1.20607 1.74702 1.24387 1.17090 1.02954 1.21648 0.88977 0.88369 0.89904 1.20422 0.92680 0.96786 0.97661 1.20160 0.99529 0.90222 1.11106 0.91994 0.85553 0.87874 0.88189 0.86919 0.86041 0.89437 0.86027 0.89263 0.87981 0.86854 0.87239 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.12 9.49 30.88 0.29 -10.83 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 10 C 0.16 3.93 6.65 -39.10 -0.26 3.67 16 11 C -0.23 -5.21 9.17 -39.39 -0.36 -5.57 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 13 C -0.18 -3.12 4.38 -104.58 -0.46 -3.58 16 14 C -0.07 -0.99 4.07 -29.04 -0.12 -1.11 16 15 C 0.53 7.18 7.71 -10.99 -0.08 7.10 16 16 O -0.48 -7.94 15.65 5.56 0.09 -7.86 16 17 N -0.53 -5.38 3.01 -115.78 -0.35 -5.72 16 18 C 0.09 0.56 6.39 -3.13 -0.02 0.54 16 19 C -0.15 -0.41 6.14 -26.23 -0.16 -0.57 16 20 C 0.12 0.40 7.35 -4.09 -0.03 0.37 16 21 N -0.40 -3.41 4.11 -61.92 -0.25 -3.66 16 22 N -0.07 -0.81 13.98 60.35 0.84 0.03 16 23 N -0.02 -0.29 13.40 60.35 0.81 0.52 16 24 N -0.33 -4.24 9.60 30.14 0.29 -3.95 16 25 C 0.48 5.04 7.97 -320.15 -2.55 2.48 16 26 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 27 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 30 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.10 1.32 7.77 -51.93 -0.40 0.91 16 32 H 0.11 1.49 7.24 -51.93 -0.38 1.12 16 33 H 0.12 0.79 7.28 -51.93 -0.38 0.41 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.12 -0.07 8.14 -51.93 -0.42 -0.49 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -35.53 344.56 -6.90 -42.43 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.24 Total: 1.25 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -5.01 Total: -13.97 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 2.10 Total: -37.65 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.53 -6.90 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294034486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.171 kcal (2) G-P(sol) polarization free energy of solvation -35.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds