Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00263 * 2 1 4 4 H 1.48501 * 109.46977 * 270.00713 * 3 2 1 5 5 H 1.48501 * 109.46595 * 30.00222 * 3 2 1 6 6 H 1.48494 * 109.47286 * 149.99918 * 3 2 1 7 7 C 1.38658 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00279 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99906 * 185.05719 * 9 7 2 11 11 C 1.38894 * 120.06799 * 354.48854 * 10 9 7 12 12 C 1.38089 * 119.92985 * 179.97438 * 11 10 9 13 13 C 1.38321 * 120.06351 * 359.74718 * 12 11 10 14 14 C 1.38279 * 120.14576 * 0.50643 * 13 12 11 15 15 C 1.50692 * 119.97288 * 179.76601 * 14 13 12 16 16 C 1.50698 * 109.47421 * 269.72879 * 15 14 13 17 17 O 1.21276 * 119.99701 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00211 * 179.97438 * 16 15 14 19 19 C 1.47576 * 121.90895 * 179.73626 * 18 16 15 20 20 C 1.53287 * 108.71903 * 223.55363 * 19 18 16 21 21 C 1.53409 * 109.80839 * 297.57789 * 20 19 18 22 22 N 1.46017 * 108.81466 * 49.11495 * 21 20 19 23 23 N 1.39485 * 130.07698 * 161.08998 * 22 21 20 24 24 N 1.29373 * 106.50343 * 180.20522 * 23 22 21 25 25 N 1.28906 * 110.37972 * 359.94714 * 24 23 22 26 26 C 1.30230 * 110.25614 * 359.96439 * 25 24 23 27 27 C 1.38125 * 120.06169 * 359.49165 * 14 13 12 28 28 H 0.96996 * 120.00167 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.03955 * 359.95745 * 11 10 9 30 30 H 1.07994 * 119.96870 * 179.97438 * 12 11 10 31 31 H 1.08009 * 119.92958 * 180.27237 * 13 12 11 32 32 H 1.09001 * 109.47289 * 149.72180 * 15 14 13 33 33 H 1.09007 * 109.46918 * 29.72303 * 15 14 13 34 34 H 1.09003 * 109.51328 * 103.82509 * 19 18 16 35 35 H 1.09006 * 109.78445 * 343.44739 * 19 18 16 36 36 H 1.09005 * 109.41458 * 177.46781 * 20 19 18 37 37 H 1.09003 * 109.35505 * 57.64755 * 20 19 18 38 38 H 1.08995 * 109.57922 * 289.31013 * 21 20 19 39 39 H 1.09010 * 109.68715 * 168.97757 * 21 20 19 40 40 H 1.08005 * 120.03005 * 180.23202 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4574 -3.4394 0.0926 12 6 4.2026 -4.5969 0.2012 13 6 3.5687 -5.8198 0.3281 14 6 2.1876 -5.8886 0.3361 15 6 1.5011 -7.2234 0.4692 16 6 1.2651 -7.8058 -0.9005 17 8 1.6190 -7.1966 -1.8876 18 7 0.6606 -9.0036 -1.0284 19 6 0.4035 -9.6104 -2.3489 20 6 -1.0150 -10.1915 -2.3554 21 6 -1.1268 -11.3017 -1.3025 22 7 -0.5874 -10.8081 -0.0386 23 7 -0.7743 -11.2771 1.2617 24 7 -0.0884 -10.4991 2.0351 25 7 0.5090 -9.5908 1.3425 26 6 0.2380 -9.7375 0.0771 27 6 1.4367 -4.7343 0.2278 28 1 -0.4850 0.8400 0.0004 29 1 3.9528 -2.4845 -0.0027 30 1 5.2813 -4.5469 0.1907 31 1 4.1537 -6.7233 0.4173 32 1 0.5460 -7.0917 0.9777 33 1 2.1306 -7.8996 1.0479 34 1 1.1256 -10.4065 -2.5306 35 1 0.4917 -8.8521 -3.1269 36 1 -1.2334 -10.6032 -3.3408 37 1 -1.7301 -9.4014 -2.1262 38 1 -0.5572 -12.1722 -1.6277 39 1 -2.1729 -11.5783 -1.1702 40 1 0.3581 -4.7883 0.2379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294448614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = 104.132584 kcal Electronic energy + Delta-G solvation = -27168.478062 eV Core-core repulsion = 23180.767043 eV Total energy + Delta-G solvation = -3987.711020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.55645 -40.54098 -38.95471 -37.91702 -36.42663 -35.25924 -32.72802 -32.28308 -31.84966 -31.65409 -29.21969 -27.99443 -26.46977 -25.22750 -24.73116 -23.93793 -22.13686 -21.57410 -20.80290 -19.89580 -18.09459 -17.82610 -17.46707 -17.27027 -16.87655 -16.61752 -15.85482 -15.26929 -15.02782 -14.61787 -14.53712 -14.34053 -14.10193 -13.66531 -13.60699 -13.43607 -13.35744 -12.77024 -12.53501 -12.48030 -12.32993 -12.04262 -11.83111 -11.55441 -11.51366 -11.28517 -11.24096 -10.83535 -10.82992 -10.70963 -10.58094 -10.41029 -10.26579 -9.33932 -9.29693 -8.79720 -8.04506 -7.18002 -6.40128 -3.99119 0.60536 1.10232 1.82837 1.93256 2.24166 2.43010 2.46081 3.15784 3.16720 3.21549 3.39984 3.76508 3.99781 4.00437 4.08902 4.22149 4.50684 4.59496 4.62116 4.81742 4.92661 4.99547 5.03217 5.07968 5.15961 5.20507 5.29433 5.40171 5.57981 5.76340 5.77133 5.89332 5.97890 6.21005 6.37360 6.53281 6.72982 6.95699 7.11318 7.30357 7.40892 7.47745 7.58158 7.86196 8.04966 8.14852 9.05714 9.76626 10.78203 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.002586 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.603297 B =10823.207137 C =10992.713709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.228 4.228 12 C -0.074 4.074 13 C -0.194 4.194 14 C -0.037 4.037 15 C -0.085 4.085 16 C 0.538 3.462 17 O -0.475 6.475 18 N -0.534 5.534 19 C 0.095 3.905 20 C -0.156 4.156 21 C 0.120 3.880 22 N -0.399 5.399 23 N -0.073 5.073 24 N -0.022 5.022 25 N -0.334 5.334 26 C 0.476 3.524 27 C -0.174 4.174 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -23.199 -5.276 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.248 4.248 12 C -0.092 4.092 13 C -0.213 4.213 14 C -0.038 4.038 15 C -0.124 4.124 16 C 0.328 3.672 17 O -0.342 6.342 18 N -0.270 5.270 19 C -0.026 4.026 20 C -0.195 4.195 21 C -0.002 4.002 22 N -0.203 5.203 23 N -0.060 5.060 24 N -0.018 5.018 25 N -0.192 5.192 26 C 0.111 3.889 27 C -0.194 4.194 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.419 -22.877 -4.600 23.378 hybrid contribution 0.313 0.730 -1.085 1.345 sum -1.106 -22.147 -5.686 22.892 Atomic orbital electron populations 1.70040 1.05939 1.27546 1.46466 1.25273 0.95829 0.98770 0.96661 0.85723 0.78936 0.80172 0.78658 1.19942 1.20293 1.19197 1.21319 0.91784 0.80843 1.52735 0.89104 1.83977 1.34237 1.11374 1.78772 1.19256 0.90249 0.87925 0.92422 1.21191 0.93814 0.98998 1.10767 1.20686 0.98423 0.92257 0.97881 1.20374 0.93217 0.97055 1.10677 1.18695 0.93311 0.91585 1.00226 1.20690 1.03918 0.95790 0.92007 1.21353 0.74888 0.77405 0.93564 1.90813 1.46258 1.56815 1.40315 1.45818 1.58583 1.19410 1.03225 1.22185 0.96347 1.00038 0.83997 1.22426 0.97873 0.98798 1.00423 1.22121 1.02162 0.98143 0.77750 1.51470 1.36013 1.23643 1.09126 1.82448 1.21049 1.19417 0.83083 1.78409 1.03127 0.98198 1.22043 1.74690 1.25160 1.21319 0.98008 1.21632 0.90420 0.87081 0.89810 1.19952 0.99047 0.90001 1.10360 0.92113 0.85562 0.87375 0.87784 0.87454 0.86339 0.89443 0.85960 0.85987 0.89115 0.87987 0.86789 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.27 9.76 0.04 0.00 -5.27 16 10 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 12 C -0.07 -1.43 10.04 -39.61 -0.40 -1.82 16 13 C -0.19 -3.54 9.70 -39.54 -0.38 -3.93 16 14 C -0.04 -0.70 4.37 -104.65 -0.46 -1.16 16 15 C -0.08 -1.26 4.07 -29.04 -0.12 -1.38 16 16 C 0.54 7.65 7.70 -10.99 -0.08 7.57 16 17 O -0.47 -8.23 15.66 5.56 0.09 -8.14 16 18 N -0.53 -5.69 3.00 -115.97 -0.35 -6.04 16 19 C 0.10 0.61 6.38 -3.30 -0.02 0.59 16 20 C -0.16 -0.51 6.12 -26.37 -0.16 -0.67 16 21 C 0.12 0.46 7.36 -4.09 -0.03 0.43 16 22 N -0.40 -3.62 4.11 -61.92 -0.25 -3.87 16 23 N -0.07 -0.84 13.98 60.35 0.84 0.00 16 24 N -0.02 -0.30 13.40 60.35 0.81 0.51 16 25 N -0.33 -4.43 9.61 30.14 0.29 -4.14 16 26 C 0.48 5.31 7.97 -320.15 -2.55 2.76 16 27 C -0.17 -3.85 9.65 -39.39 -0.38 -4.23 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 30 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.11 1.56 7.78 -51.93 -0.40 1.15 16 33 H 0.12 1.61 7.23 -51.93 -0.38 1.23 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 0.86 7.29 -51.93 -0.38 0.48 16 36 H 0.12 0.00 8.14 -51.93 -0.42 -0.43 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.11 0.26 8.14 -51.92 -0.42 -0.16 16 40 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -35.88 344.55 -6.90 -42.77 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.24 Total: 1.74 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -5.01 Total: -13.61 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 2.10 Total: -38.54 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.88 -6.90 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294448614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.907 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds