Wall clock time and date at job start Tue Mar 31 2020 04:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81401 * 109.47524 * 2 1 4 4 O 1.42102 * 110.54087 * 68.37144 * 3 2 1 5 5 O 1.42098 * 110.54040 * 291.62610 * 3 2 1 6 6 N 1.65591 * 104.45320 * 179.97438 * 3 2 1 7 7 C 1.46924 * 120.63041 * 89.99893 * 6 3 2 8 8 C 1.53188 * 108.77644 * 233.61036 * 7 6 3 9 9 C 1.53047 * 109.31405 * 305.36240 * 8 7 6 10 10 C 1.53042 * 109.53253 * 61.36717 * 9 8 7 11 11 H 1.08994 * 109.49756 * 58.62100 * 10 9 8 12 12 C 1.50703 * 109.49425 * 178.68644 * 10 9 8 13 13 O 1.21297 * 120.00132 * 99.31341 * 12 10 9 14 14 N 1.34775 * 120.00098 * 279.31490 * 12 10 9 15 15 C 1.37092 * 120.00257 * 186.36716 * 14 12 10 16 16 H 1.08001 * 119.99819 * 325.12095 * 15 14 12 17 17 C 1.38952 * 120.00198 * 145.11910 * 15 14 12 18 18 N 1.31416 * 119.99814 * 332.14763 * 17 15 14 19 19 Si 1.86792 * 120.00153 * 152.14808 * 17 15 14 20 20 H 1.48503 * 109.47309 * 60.00093 * 19 17 15 21 21 H 1.48502 * 109.47301 * 300.00017 * 19 17 15 22 22 H 1.48505 * 109.47222 * 180.02562 * 19 17 15 23 23 C 1.46510 * 119.99724 * 6.36761 * 14 12 10 24 24 C 1.47198 * 109.46806 * 92.89129 * 23 14 12 25 25 N 7.63117 * 161.46649 * 167.46989 * 2 1 3 26 26 C 1.46923 * 120.63325 * 270.00244 * 6 3 2 27 27 H 1.09001 * 109.46702 * 60.00407 * 1 2 3 28 28 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46954 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.47223 * 239.99505 * 2 1 3 31 31 H 1.09003 * 109.47348 * 119.99961 * 2 1 3 32 32 H 1.09001 * 109.58762 * 113.81858 * 7 6 3 33 33 H 1.09007 * 109.58838 * 353.39574 * 7 6 3 34 34 H 1.09001 * 109.50041 * 185.41387 * 8 7 6 35 35 H 1.08997 * 109.49905 * 65.31495 * 8 7 6 36 36 H 1.09004 * 109.45707 * 301.35050 * 9 8 7 37 37 H 1.08999 * 109.44894 * 181.38100 * 9 8 7 38 38 H 0.96999 * 119.99622 * 354.22355 * 18 17 15 39 39 H 1.08995 * 109.46781 * 212.88711 * 23 14 12 40 40 H 1.08999 * 109.46666 * 332.89189 * 23 14 12 41 41 H 1.09001 * 109.58560 * 6.59715 * 26 6 3 42 42 H 1.09008 * 109.58582 * 246.18051 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.5306 1.4995 -1.2632 8 6 5.4162 0.2497 -1.2485 9 6 6.2984 0.2691 0.0020 10 6 5.4152 0.2500 1.2517 11 1 4.7876 -0.6411 1.2400 12 6 6.2851 0.2366 2.4822 13 8 6.4932 1.2659 3.0891 14 7 6.8319 -0.9192 2.9083 15 6 7.5141 -0.9577 4.0968 16 1 8.0975 -0.1053 4.4124 17 6 7.4550 -2.0932 4.8955 18 7 6.3990 -2.8741 4.8501 19 14 8.8764 -2.5097 6.0335 20 1 9.0774 -1.4009 7.0008 21 1 10.1128 -2.6983 5.2328 22 1 8.5694 -3.7613 6.7714 23 6 6.6973 -2.1346 2.1013 24 6 7.8645 -2.2662 1.2141 25 7 8.7654 -2.3679 0.5262 26 6 4.5295 1.4999 1.2652 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.1538 2.3878 -1.3662 33 1 3.8316 1.4423 -2.0977 34 1 6.0461 0.2396 -2.1380 35 1 4.7881 -0.6411 -1.2368 36 1 6.9083 1.1725 0.0020 37 1 6.9470 -0.6070 0.0022 38 1 5.6265 -2.6151 4.3237 39 1 6.6407 -3.0025 2.7583 40 1 5.7896 -2.0733 1.5010 41 1 3.8299 1.4430 2.0991 42 1 5.1527 2.3883 1.3685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299721103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:15 Heat of formation + Delta-G solvation = -70.719338 kcal Electronic energy + Delta-G solvation = -27492.428866 eV Core-core repulsion = 23600.286899 eV Total energy + Delta-G solvation = -3892.141968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -39.87892 -37.76743 -37.26395 -36.27953 -36.05106 -34.89781 -33.39657 -32.77803 -31.77443 -31.05324 -27.76447 -25.31782 -24.85610 -24.06227 -23.30935 -20.97134 -19.37878 -18.93293 -18.26859 -17.96563 -16.91545 -16.61091 -16.54091 -16.16503 -15.25882 -14.94174 -14.59366 -14.45125 -14.14033 -13.91506 -13.88364 -13.56766 -13.47388 -13.44457 -13.20829 -12.76646 -12.73783 -12.32470 -12.19707 -12.16551 -12.02332 -11.98440 -11.83229 -11.67803 -11.42858 -11.19477 -11.11533 -10.98308 -10.89151 -10.66551 -10.42734 -10.29499 -10.14291 -9.21101 -9.12200 -8.65652 -8.11740 -6.84080 -4.23681 0.09749 2.46420 2.99341 3.17345 3.20202 3.30257 3.47659 3.49844 3.69316 3.93811 4.06465 4.30036 4.40778 4.47101 4.52322 4.64821 4.78289 4.81562 4.90962 4.95331 5.07955 5.12987 5.25716 5.28383 5.33099 5.41030 5.43921 5.61342 5.64315 5.73395 5.79318 5.80968 6.00347 6.05884 6.08885 6.19618 6.30929 6.45546 7.61933 7.90153 7.97803 8.32944 8.60606 9.08290 9.49420 10.40212 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.003885 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.172907 B = 7206.179770 C = 7706.509504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.607 3.393 4 O -0.949 6.949 5 O -0.958 6.958 6 N -0.998 5.998 7 C 0.120 3.880 8 C -0.133 4.133 9 C -0.112 4.112 10 C -0.125 4.125 11 H 0.089 0.911 12 C 0.476 3.524 13 O -0.552 6.552 14 N -0.449 5.449 15 C -0.403 4.403 16 H 0.091 0.909 17 C 0.014 3.986 18 N -0.869 5.869 19 Si 1.068 2.932 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.278 1.278 23 C 0.173 3.827 24 C 0.210 3.790 25 N -0.450 5.450 26 C 0.143 3.857 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.275 0.725 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 0.782 -11.610 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.700 3.300 4 O -0.940 6.940 5 O -0.948 6.948 6 N -0.836 5.836 7 C -0.005 4.005 8 C -0.172 4.172 9 C -0.151 4.151 10 C -0.148 4.148 11 H 0.107 0.893 12 C 0.263 3.737 13 O -0.432 6.432 14 N -0.171 5.171 15 C -0.530 4.530 16 H 0.109 0.891 17 C -0.193 4.193 18 N -0.503 5.503 19 Si 0.893 3.107 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.202 1.202 23 C 0.046 3.954 24 C -0.108 4.108 25 N -0.130 5.130 26 C 0.017 3.983 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.490 0.843 -11.221 14.096 hybrid contribution -0.645 0.184 -0.819 1.058 sum -9.134 1.027 -12.040 15.148 Atomic orbital electron populations 1.21494 0.90635 1.05037 1.03311 1.30603 1.07100 1.26985 1.11802 1.05214 0.72939 0.77593 0.74278 1.93618 1.83066 1.72343 1.44943 1.93575 1.83311 1.72590 1.45361 1.57763 1.24025 1.89413 1.12373 1.21453 0.95735 0.98844 0.84445 1.21947 0.98615 0.98125 0.98528 1.21540 0.97510 1.03404 0.92598 1.21731 0.97883 0.99953 0.95263 0.89331 1.20177 0.82384 0.84883 0.86222 1.90580 1.62229 1.31584 1.58823 1.43420 1.49183 1.05960 1.18500 1.20297 1.29634 1.06367 0.96683 0.89108 1.26392 1.01106 0.93699 0.98084 1.70845 1.02717 1.40970 1.35777 0.83508 0.74413 0.76914 0.75872 1.20589 1.21000 1.20250 1.19303 0.89255 0.95289 0.91599 1.30191 0.95168 0.92501 0.92963 1.81145 1.10574 1.09229 1.12002 1.21230 0.95337 0.98235 0.83452 0.91155 0.90011 0.90930 0.85119 0.84736 0.90659 0.89225 0.90413 0.91400 0.90971 0.91357 0.91408 0.84827 0.87893 0.88659 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.92 37.16 0.37 -0.72 16 2 C -0.64 -5.07 6.90 37.16 0.26 -4.81 16 3 S 2.61 30.26 5.41 -107.50 -0.58 29.68 16 4 O -0.95 -14.49 16.72 -57.54 -0.96 -15.45 16 5 O -0.96 -12.99 16.73 -57.54 -0.96 -13.96 16 6 N -1.00 -11.73 3.22 -113.52 -0.37 -12.10 16 7 C 0.12 1.21 6.31 -3.71 -0.02 1.18 16 8 C -0.13 -1.29 6.08 -26.61 -0.16 -1.46 16 9 C -0.11 -1.51 5.04 -26.69 -0.13 -1.64 16 10 C -0.12 -1.87 1.85 -91.65 -0.17 -2.04 16 11 H 0.09 1.09 6.50 -51.93 -0.34 0.76 16 12 C 0.48 9.90 6.78 -10.98 -0.07 9.82 16 13 O -0.55 -13.67 15.75 5.54 0.09 -13.59 16 14 N -0.45 -9.74 2.29 -117.93 -0.27 -10.01 16 15 C -0.40 -10.14 8.88 -14.94 -0.13 -10.27 16 16 H 0.09 2.49 7.71 -52.49 -0.40 2.09 16 17 C 0.01 0.35 4.83 -17.47 -0.08 0.27 16 18 N -0.87 -21.23 12.18 55.50 0.68 -20.55 16 19 Si 1.07 22.29 30.00 -169.99 -5.10 17.19 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 C 0.17 3.07 4.72 -6.82 -0.03 3.04 16 24 C 0.21 3.90 13.31 -20.69 -0.28 3.62 16 25 N -0.45 -8.89 18.54 42.23 0.78 -8.11 16 26 C 0.14 2.07 5.18 -3.71 -0.02 2.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.13 0.98 8.14 -51.92 -0.42 0.55 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.76 7.10 -51.92 -0.37 0.39 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.99 4.97 -51.93 -0.26 0.74 16 38 H 0.27 6.48 7.23 -40.82 -0.30 6.19 16 39 H 0.13 2.56 5.36 -51.93 -0.28 2.28 16 40 H 0.10 1.38 5.79 -51.93 -0.30 1.08 16 41 H 0.10 1.43 7.10 -51.93 -0.37 1.06 16 42 H 0.09 1.42 7.71 -51.92 -0.40 1.02 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -33.15 354.71 -7.45 -40.59 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.61 Total: 1.91 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.48 Total: -0.95 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.82 Total: -50.77 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.84 Total: -42.99 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.10 Total: 17.19 kcal Atomic # 16 Polarization: 30.26 SS G_CDS: -0.58 Total: 29.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.15 -7.45 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299721103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.126 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds