Wall clock time and date at job start Tue Mar 31 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47485 * 2 1 4 4 O 1.42106 * 110.54161 * 68.37352 * 3 2 1 5 5 O 1.42093 * 110.54499 * 291.62696 * 3 2 1 6 6 N 1.65599 * 104.45097 * 179.97438 * 3 2 1 7 7 C 1.46928 * 120.62856 * 89.99970 * 6 3 2 8 8 C 1.53193 * 108.77035 * 126.37149 * 7 6 3 9 9 C 1.53038 * 109.31597 * 54.63667 * 8 7 6 10 10 C 1.53047 * 109.53497 * 298.63243 * 9 8 7 11 11 H 1.08997 * 109.49733 * 301.37814 * 10 9 8 12 12 C 1.50702 * 109.49116 * 181.31589 * 10 9 8 13 13 O 1.21292 * 119.99650 * 242.88275 * 12 10 9 14 14 N 1.34775 * 120.00062 * 62.89054 * 12 10 9 15 15 C 1.37096 * 120.00185 * 2.94856 * 14 12 10 16 16 H 1.07996 * 119.99790 * 9.62954 * 15 14 12 17 17 C 1.38948 * 119.99891 * 189.62576 * 15 14 12 18 18 N 1.31407 * 119.99934 * 28.31281 * 17 15 14 19 19 Si 1.86797 * 119.99935 * 208.30575 * 17 15 14 20 20 H 1.48502 * 109.47046 * 90.00265 * 19 17 15 21 21 H 1.48495 * 109.47195 * 210.00145 * 19 17 15 22 22 H 1.48501 * 109.47403 * 330.00411 * 19 17 15 23 23 C 1.46499 * 119.99704 * 182.94872 * 14 12 10 24 24 C 1.47206 * 109.47064 * 88.98197 * 23 14 12 25 25 N 9.55234 * 157.79967 * 63.03250 * 2 1 3 26 26 C 1.46930 * 120.62956 * 269.97716 * 6 3 2 27 27 H 1.08994 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46904 * 299.99938 * 1 2 3 29 29 H 1.09002 * 109.47035 * 59.99593 * 1 2 3 30 30 H 1.09003 * 109.47113 * 239.99695 * 2 1 3 31 31 H 1.09003 * 109.46571 * 120.00663 * 2 1 3 32 32 H 1.09002 * 109.58596 * 6.58418 * 7 6 3 33 33 H 1.08991 * 109.58396 * 246.15787 * 7 6 3 34 34 H 1.08998 * 109.49612 * 174.58786 * 8 7 6 35 35 H 1.08998 * 109.49671 * 294.68352 * 8 7 6 36 36 H 1.08996 * 109.46003 * 58.64974 * 9 8 7 37 37 H 1.09003 * 109.46271 * 178.62858 * 9 8 7 38 38 H 0.97000 * 120.00272 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.47274 * 208.98097 * 23 14 12 40 40 H 1.09003 * 109.47434 * 328.98387 * 23 14 12 41 41 H 1.09008 * 109.57743 * 113.84420 * 26 6 3 42 42 H 1.08993 * 109.58594 * 353.42599 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8387 2.3438 1.2370 5 8 1.8387 2.3438 -1.2369 6 7 3.7844 1.5652 0.0007 7 6 4.5306 1.4994 -1.2633 8 6 5.6204 2.5760 -1.2489 9 6 6.4857 2.4038 0.0015 10 6 5.6193 2.5768 1.2512 11 1 5.1565 3.5636 1.2393 12 6 6.4785 2.4391 2.4817 13 8 6.2744 1.5364 3.2658 14 7 7.4733 3.3189 2.7109 15 6 7.6655 4.3741 1.8571 16 1 6.9327 4.5918 1.0942 17 6 8.8030 5.1636 1.9732 18 7 9.9129 4.6500 2.4540 19 14 8.7546 6.9549 1.4459 20 1 8.3528 7.7997 2.5992 21 1 10.1005 7.3687 0.9743 22 1 7.7718 7.1204 0.3450 23 6 8.3494 3.1476 3.8725 24 6 9.4916 2.2951 3.5042 25 7 10.3742 1.6368 3.2169 26 6 4.5296 1.5003 1.2653 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 3.8523 1.6772 -2.0977 33 1 4.9896 0.5162 -1.3658 34 1 6.2424 2.4759 -2.1384 35 1 5.1570 3.5625 -1.2376 36 1 6.9290 1.4080 0.0020 37 1 7.2769 3.1535 0.0018 38 1 10.7070 5.2011 2.5355 39 1 8.7136 4.1215 4.1998 40 1 7.7914 2.6775 4.6824 41 1 4.9886 0.5170 1.3688 42 1 3.8506 1.6784 2.0991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299721104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:21 Heat of formation + Delta-G solvation = -69.046440 kcal Electronic energy + Delta-G solvation = -27348.484089 eV Core-core repulsion = 23456.414663 eV Total energy + Delta-G solvation = -3892.069426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.54951 -37.54920 -37.15569 -35.93322 -35.58396 -34.44223 -33.35874 -32.39881 -31.68385 -30.94387 -27.64968 -25.13989 -24.62516 -23.85632 -23.26513 -20.67777 -19.21674 -18.68421 -18.02630 -17.63443 -16.54672 -16.39776 -16.13604 -16.08004 -14.92072 -14.58753 -14.51222 -14.25280 -14.11874 -13.92299 -13.83091 -13.42663 -13.13431 -12.72607 -12.71816 -12.63196 -12.47885 -12.10969 -12.06851 -11.91632 -11.81467 -11.78132 -11.50988 -11.29218 -11.26252 -11.10886 -10.77603 -10.69814 -10.65343 -10.50633 -10.33720 -10.23093 -10.01910 -9.35863 -8.91696 -8.54652 -8.20659 -6.66157 -4.08182 0.18786 2.60760 3.01495 3.16402 3.17590 3.51470 3.78798 3.80197 4.02857 4.04911 4.17639 4.36084 4.56804 4.71496 4.73297 4.85781 4.92832 5.19894 5.23789 5.30824 5.41366 5.44270 5.45833 5.53510 5.61003 5.65854 5.76422 5.92603 6.04224 6.09470 6.20609 6.29512 6.41704 6.50742 6.57301 6.66319 6.76193 6.88935 7.26009 7.38076 8.10137 8.84163 8.89315 9.19694 9.60674 10.38662 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.003917 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.449842 B = 7146.115719 C = 7854.857840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.636 4.636 3 S 2.607 3.393 4 O -0.950 6.950 5 O -0.958 6.958 6 N -0.999 5.999 7 C 0.117 3.883 8 C -0.128 4.128 9 C -0.117 4.117 10 C -0.094 4.094 11 H 0.094 0.906 12 C 0.469 3.531 13 O -0.601 6.601 14 N -0.436 5.436 15 C -0.350 4.350 16 H 0.113 0.887 17 C 0.044 3.956 18 N -0.854 5.854 19 Si 0.916 3.084 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.228 3.772 24 C 0.257 3.743 25 N -0.482 5.482 26 C 0.138 3.862 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.276 0.724 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -4.720 -5.966 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.765 4.765 3 S 2.700 3.300 4 O -0.940 6.940 5 O -0.948 6.948 6 N -0.837 5.837 7 C -0.009 4.009 8 C -0.167 4.167 9 C -0.155 4.155 10 C -0.117 4.117 11 H 0.112 0.888 12 C 0.258 3.742 13 O -0.488 6.488 14 N -0.155 5.155 15 C -0.476 4.476 16 H 0.131 0.869 17 C -0.163 4.163 18 N -0.490 5.490 19 Si 0.742 3.258 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.192 1.192 23 C 0.101 3.899 24 C -0.061 4.061 25 N -0.163 5.163 26 C 0.013 3.987 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.138 0.862 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.505 -5.271 -5.964 14.823 hybrid contribution 0.164 0.554 -0.302 0.652 sum -12.341 -4.718 -6.266 14.622 Atomic orbital electron populations 1.21496 0.90785 1.04847 1.03378 1.30607 1.06925 1.27376 1.11594 1.05133 0.73169 0.77393 0.74309 1.93607 1.83224 1.72191 1.44979 1.93569 1.83438 1.72400 1.45392 1.57680 1.23759 1.89601 1.12634 1.21509 0.95090 0.99760 0.84503 1.21852 0.96897 0.99082 0.98836 1.21621 0.98549 1.03653 0.91699 1.21206 0.95525 1.00383 0.94594 0.88837 1.19974 0.84115 0.82392 0.87734 1.90558 1.73753 1.35174 1.49272 1.43640 1.25691 1.23629 1.22500 1.19716 1.07179 1.04607 1.16079 0.86940 1.25188 0.93784 1.00237 0.97129 1.69983 1.00067 1.35715 1.43245 0.86098 0.77788 0.82716 0.79217 1.19978 1.21129 1.19202 1.18559 0.84413 0.97899 0.88992 1.29282 0.93694 0.90864 0.92301 1.80934 1.12041 1.14541 1.08756 1.21289 0.94348 0.99680 0.83362 0.90207 0.90932 0.91106 0.85261 0.84932 0.89305 0.91591 0.90829 0.91257 0.92351 0.87963 0.91342 0.86206 0.88995 0.90661 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.92 37.16 0.37 -0.74 16 2 C -0.64 -5.29 6.90 37.16 0.26 -5.03 16 3 S 2.61 32.28 5.45 -107.50 -0.59 31.70 16 4 O -0.95 -15.03 16.59 -57.54 -0.95 -15.98 16 5 O -0.96 -13.88 16.59 -57.54 -0.95 -14.83 16 6 N -1.00 -12.95 3.22 -113.52 -0.37 -13.32 16 7 C 0.12 1.35 6.43 -3.71 -0.02 1.33 16 8 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 9 C -0.12 -1.93 4.78 -26.69 -0.13 -2.06 16 10 C -0.09 -1.68 1.84 -91.65 -0.17 -1.85 16 11 H 0.09 1.68 7.51 -51.93 -0.39 1.29 16 12 C 0.47 10.01 6.99 -10.98 -0.08 9.94 16 13 O -0.60 -13.92 15.48 5.55 0.09 -13.84 16 14 N -0.44 -9.60 2.59 -117.93 -0.30 -9.91 16 15 C -0.35 -7.69 7.60 -14.93 -0.11 -7.80 16 16 H 0.11 2.35 5.48 -52.49 -0.29 2.07 16 17 C 0.04 0.97 4.78 -17.47 -0.08 0.89 16 18 N -0.85 -20.24 9.45 55.50 0.52 -19.72 16 19 Si 0.92 17.79 29.64 -169.99 -5.04 12.75 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.29 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 C 0.23 4.85 5.18 -6.83 -0.04 4.81 16 24 C 0.26 6.04 13.60 -20.69 -0.28 5.75 16 25 N -0.48 -12.07 18.55 42.23 0.78 -11.29 16 26 C 0.14 2.15 5.09 -3.71 -0.02 2.13 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.13 0.98 8.14 -51.92 -0.42 0.55 16 32 H 0.09 0.92 6.86 -51.93 -0.36 0.57 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 1.91 5.45 -51.93 -0.28 1.62 16 38 H 0.28 6.37 8.31 -40.82 -0.34 6.03 16 39 H 0.12 2.50 6.42 -51.93 -0.33 2.17 16 40 H 0.09 1.79 7.41 -51.93 -0.38 1.41 16 41 H 0.08 1.15 7.92 -51.92 -0.41 0.74 16 42 H 0.10 1.54 6.86 -51.93 -0.36 1.18 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -30.91 353.56 -7.69 -38.60 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.74 Total: 4.99 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.47 Total: 5.52 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.64 Total: -54.23 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.82 Total: -44.65 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.04 Total: 12.75 kcal Atomic # 16 Polarization: 32.28 SS G_CDS: -0.59 Total: 31.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.91 -7.69 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299721104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.449 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds