Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48504 * 109.46983 * 240.00390 * 3 2 1 5 5 H 1.48501 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47058 * 120.00249 * 3 2 1 7 7 C 1.38802 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00024 * 180.02562 * 7 2 1 9 9 S 1.76207 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99684 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46850 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99913 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99986 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00005 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47153 * 180.02562 * 14 13 11 16 16 H 1.09005 * 110.05760 * 54.97348 * 15 14 13 17 17 C 1.54310 * 110.03799 * 293.54678 * 15 14 13 18 18 C 1.54988 * 104.26936 * 217.21105 * 17 15 14 19 19 C 1.54312 * 102.70343 * 37.33141 * 18 17 15 20 20 C 1.52485 * 110.09827 * 203.81609 * 19 18 17 21 21 C 1.53220 * 109.19851 * 293.48553 * 20 19 18 22 22 O 1.42911 * 109.36345 * 303.48270 * 21 20 19 23 23 C 1.42913 * 114.22280 * 61.64327 * 22 21 20 24 24 C 1.52494 * 110.11281 * 81.62873 * 19 18 17 25 25 C 1.53656 * 104.88045 * 322.72602 * 19 18 17 26 26 H 1.08996 * 110.06373 * 142.24414 * 25 19 18 27 27 O 1.42906 * 110.06118 * 263.74892 * 25 19 18 28 28 H 0.96998 * 119.99714 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47362 * 60.00786 * 10 9 7 30 30 H 1.08995 * 109.47197 * 299.99979 * 10 9 7 31 31 H 0.97002 * 120.00265 * 0.02562 * 13 11 10 32 32 H 1.08996 * 109.47078 * 60.00468 * 14 13 11 33 33 H 1.09003 * 109.47193 * 300.00318 * 14 13 11 34 34 H 1.08998 * 110.47378 * 98.51777 * 17 15 14 35 35 H 1.08996 * 110.58243 * 335.96084 * 17 15 14 36 36 H 1.09001 * 110.76902 * 279.02651 * 18 17 15 37 37 H 1.08998 * 110.76715 * 155.63257 * 18 17 15 38 38 H 1.09006 * 109.49103 * 173.58513 * 20 19 18 39 39 H 1.09000 * 109.54305 * 53.41962 * 20 19 18 40 40 H 1.09002 * 109.49501 * 183.50770 * 21 20 19 41 41 H 1.08996 * 109.48796 * 63.45455 * 21 20 19 42 42 H 1.09007 * 109.49529 * 58.30349 * 23 22 21 43 43 H 1.08998 * 109.49817 * 178.36405 * 23 22 21 44 44 H 1.08997 * 109.51346 * 306.55916 * 24 19 18 45 45 H 1.08997 * 109.51494 * 186.39335 * 24 19 18 46 46 H 0.96700 * 113.99908 * 180.02562 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7281 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 -0.0003 14 6 2.3303 -7.7151 -0.0003 15 6 3.5023 -8.6986 -0.0001 16 1 4.1664 -8.4887 0.8384 17 6 4.2797 -8.5949 -1.3291 18 6 4.6925 -10.0550 -1.6451 19 6 3.4647 -10.8637 -1.1766 20 6 3.8733 -12.2969 -0.8540 21 6 4.3069 -12.9999 -2.1445 22 8 3.2450 -12.9359 -3.0987 23 6 2.8802 -11.6083 -3.4819 24 6 2.3826 -10.8437 -2.2509 25 6 2.9783 -10.1440 0.0908 26 1 1.8890 -10.1452 0.1268 27 8 3.5084 -10.7854 1.2527 28 1 -0.4849 0.8400 0.0004 29 1 3.1244 -3.7315 0.8895 30 1 3.1244 -3.7314 -0.8905 31 1 3.8009 -6.1836 -0.0006 32 1 1.7215 -7.8751 -0.8901 33 1 1.7220 -7.8753 0.8899 34 1 5.1624 -7.9673 -1.2065 35 1 3.6392 -8.2006 -2.1179 36 1 5.5801 -10.3369 -1.0786 37 1 4.8572 -10.1872 -2.7144 38 1 3.0268 -12.8270 -0.4173 39 1 4.7030 -12.2892 -0.1470 40 1 4.5407 -14.0427 -1.9298 41 1 5.1898 -12.5051 -2.5491 42 1 3.7485 -11.0989 -3.9001 43 1 2.0880 -11.6501 -4.2294 44 1 2.1628 -9.8125 -2.5271 45 1 1.4799 -11.3191 -1.8673 46 1 3.2366 -10.3768 2.0860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331680583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = -153.133329 kcal Electronic energy + Delta-G solvation = -26192.976825 eV Core-core repulsion = 22400.801461 eV Total energy + Delta-G solvation = -3792.175363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11154 -39.22505 -38.13687 -35.63102 -34.71136 -32.45110 -32.31711 -31.43940 -29.97787 -28.52052 -26.75892 -25.51027 -24.15044 -23.88073 -22.87635 -20.60408 -20.29639 -18.84942 -17.88057 -17.65900 -16.83924 -16.34445 -16.32466 -15.90447 -15.49694 -15.21534 -15.13527 -14.82217 -14.60142 -14.38274 -14.13775 -13.92583 -13.39888 -13.30791 -13.08570 -12.72348 -12.61165 -12.57443 -12.12186 -11.99739 -11.74313 -11.62760 -11.27773 -11.06969 -11.05666 -11.01058 -10.98114 -10.78509 -10.76305 -10.41423 -10.27420 -9.84787 -9.75888 -9.42030 -9.08491 -8.93829 -8.26740 -6.52566 -6.23552 -3.94496 2.99111 3.05812 3.21840 3.25785 3.28900 3.54374 3.63902 3.73915 4.00626 4.15536 4.18556 4.37723 4.52865 4.68692 4.70424 4.76743 4.83821 4.88674 5.02401 5.07311 5.10379 5.11466 5.17031 5.20836 5.31063 5.34326 5.39453 5.42170 5.54605 5.60057 5.61059 5.66886 5.69463 5.75332 5.82564 5.86114 5.96019 5.99370 6.04927 6.10608 6.55786 6.87417 7.29753 7.57145 7.65768 8.32948 8.56914 9.21555 10.83807 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029480 B = 0.002055 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.553433 B =13621.351788 C =13742.543961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.129 3.871 15 C -0.136 4.136 16 H 0.088 0.912 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.053 4.053 20 C -0.128 4.128 21 C 0.058 3.942 22 O -0.385 6.385 23 C 0.062 3.938 24 C -0.145 4.145 25 C 0.119 3.881 26 H 0.064 0.936 27 O -0.560 6.560 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 -25.189 -2.568 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C 0.004 3.996 15 C -0.155 4.155 16 H 0.107 0.893 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.053 4.053 20 C -0.166 4.166 21 C -0.019 4.019 22 O -0.303 6.303 23 C -0.015 4.015 24 C -0.182 4.182 25 C 0.059 3.941 26 H 0.082 0.918 27 O -0.365 6.365 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.568 -25.964 -3.091 27.843 hybrid contribution 2.289 2.132 0.635 3.192 sum 11.856 -23.832 -2.456 26.731 Atomic orbital electron populations 1.70010 1.05948 1.27589 1.46728 1.24999 0.95042 0.99041 0.94519 0.86218 0.79234 0.81215 0.78800 1.19936 1.20795 1.19935 1.22823 0.94859 0.91652 1.59119 0.90985 1.85399 1.04911 0.96327 1.96726 1.23528 1.06581 0.95406 1.04887 1.20325 0.86524 0.86316 0.75128 1.90704 1.15381 1.85627 1.47481 1.45984 1.09919 1.05361 1.77980 1.21367 0.95194 0.80776 1.02234 1.22839 0.97393 0.95320 0.99917 0.89328 1.22440 0.99956 0.96845 0.96392 1.22627 0.97202 0.94541 1.01109 1.20890 0.95723 0.95482 0.93253 1.21859 1.02825 0.94309 0.97620 1.22680 0.89380 1.01201 0.88637 1.87921 1.54404 1.26957 1.61064 1.22625 0.99795 0.83255 0.95819 1.22117 0.98353 1.01812 0.95957 1.22267 0.96646 0.89368 0.85795 0.91812 1.86503 1.75765 1.58340 1.15922 0.92109 0.89271 0.89247 0.76844 0.91488 0.91823 0.91199 0.90824 0.90912 0.91158 0.91117 0.89988 0.89059 0.93251 0.92917 0.88706 0.90236 0.90678 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.63 7.85 -10.99 -0.09 9.55 16 12 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 13 N -0.74 -9.24 5.39 -60.30 -0.32 -9.56 16 14 C 0.13 1.36 4.73 -4.04 -0.02 1.35 16 15 C -0.14 -1.03 2.79 -89.40 -0.25 -1.28 16 16 H 0.09 0.65 7.96 -51.93 -0.41 0.24 16 17 C -0.12 -0.86 5.66 -25.00 -0.14 -1.00 16 18 C -0.12 -0.81 4.87 -24.99 -0.12 -0.93 16 19 C -0.05 -0.39 0.53 -154.00 -0.08 -0.47 16 20 C -0.13 -0.98 4.14 -26.88 -0.11 -1.10 16 21 C 0.06 0.42 6.65 37.27 0.25 0.67 16 22 O -0.38 -3.57 10.75 -35.23 -0.38 -3.95 16 23 C 0.06 0.46 6.64 37.27 0.25 0.71 16 24 C -0.14 -1.08 4.77 -26.87 -0.13 -1.21 16 25 C 0.12 0.90 3.35 -25.86 -0.09 0.82 16 26 H 0.06 0.51 7.36 -51.93 -0.38 0.13 16 27 O -0.56 -4.21 11.64 -35.23 -0.41 -4.62 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.90 8.31 -40.82 -0.34 3.56 16 32 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.59 7.29 -51.93 -0.38 0.21 16 36 H 0.07 0.51 7.98 -51.93 -0.41 0.10 16 37 H 0.07 0.46 6.14 -51.93 -0.32 0.14 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.65 7.49 -51.93 -0.39 0.26 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.33 7.49 -51.93 -0.39 -0.06 16 42 H 0.05 0.35 6.48 -51.93 -0.34 0.02 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.58 7.31 -51.93 -0.38 0.20 16 45 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 46 H 0.38 1.70 9.11 45.56 0.42 2.12 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -34.96 373.62 -8.67 -43.64 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.67 Total: 1.86 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.11 Total: -8.62 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.41 Total: -34.89 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.70 Total: -20.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.96 -8.67 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331680583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.498 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds