Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 119.99718 * 2 1 4 4 H 1.48506 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47223 * 299.99772 * 3 2 1 6 6 H 1.48504 * 109.47572 * 59.99868 * 3 2 1 7 7 C 1.38793 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99971 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.81005 * 99.99792 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46708 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00139 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99603 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99847 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.02289 * 306.40206 * 15 14 13 17 17 C 1.54527 * 110.16851 * 67.66611 * 15 14 13 18 18 C 1.54993 * 104.16697 * 142.64071 * 17 15 14 19 19 C 1.54298 * 102.87262 * 322.91240 * 18 17 15 20 20 C 1.52498 * 110.12312 * 278.28136 * 19 18 17 21 21 C 1.53222 * 109.20552 * 293.51166 * 20 19 18 22 22 O 1.42918 * 109.32542 * 303.43346 * 21 20 19 23 23 C 1.42912 * 114.21821 * 61.67281 * 22 21 20 24 24 C 1.52487 * 110.12590 * 156.10083 * 19 18 17 25 25 C 1.53659 * 104.88413 * 37.18658 * 19 18 17 26 26 H 1.09001 * 110.06030 * 217.76182 * 25 19 18 27 27 O 1.42893 * 110.06376 * 96.24725 * 25 19 18 28 28 H 0.97001 * 120.00533 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00854 * 10 9 7 30 30 H 1.08998 * 109.47376 * 299.99816 * 10 9 7 31 31 H 0.97003 * 120.00039 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47207 * 60.00043 * 14 13 11 33 33 H 1.08991 * 109.46881 * 299.99848 * 14 13 11 34 34 H 1.09009 * 110.38712 * 24.03947 * 17 15 14 35 35 H 1.09000 * 110.65044 * 261.37133 * 17 15 14 36 36 H 1.09002 * 110.76497 * 204.51399 * 18 17 15 37 37 H 1.09000 * 110.76091 * 81.30776 * 18 17 15 38 38 H 1.08997 * 109.51075 * 53.42766 * 20 19 18 39 39 H 1.08991 * 109.51501 * 173.59148 * 20 19 18 40 40 H 1.08999 * 109.49028 * 183.48461 * 21 20 19 41 41 H 1.08992 * 109.51954 * 63.40857 * 21 20 19 42 42 H 1.08998 * 109.49086 * 178.37189 * 23 22 21 43 43 H 1.09002 * 109.51795 * 58.30026 * 23 22 21 44 44 H 1.09005 * 109.51501 * 186.41205 * 24 19 18 45 45 H 1.08998 * 109.51451 * 306.51701 * 24 19 18 46 46 H 0.96698 * 113.99768 * 180.02562 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1293 -2.7279 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9875 -5.3027 0.0018 12 8 0.7912 -5.5023 0.0019 13 7 2.8443 -6.3430 0.0020 14 6 2.3306 -7.7150 0.0018 15 6 3.5026 -8.6985 0.0015 16 1 4.1791 -8.4726 -0.8229 17 6 4.2653 -8.6189 1.3431 18 6 4.6687 -10.0861 1.6377 19 6 3.4481 -10.8856 1.1358 20 6 2.3500 -10.8861 2.1940 21 6 2.8293 -11.6744 3.4173 22 8 3.1996 -12.9945 3.0139 23 6 4.2759 -13.0403 2.0748 24 6 3.8610 -12.3127 0.7919 25 6 2.9804 -10.1419 -0.1249 26 1 1.8916 -10.1422 -0.1768 27 8 3.5277 -10.7609 -1.2907 28 1 -0.4851 0.8400 -0.0004 29 1 3.1252 -3.7309 0.8909 30 1 3.1239 -3.7317 -0.8892 31 1 3.8011 -6.1834 0.0015 32 1 1.7222 -7.8751 -0.8884 33 1 1.7218 -7.8751 0.8916 34 1 3.6128 -8.2377 2.1287 35 1 5.1516 -7.9921 1.2448 36 1 4.8176 -10.2387 2.7066 37 1 5.5651 -10.3595 1.0812 38 1 2.1261 -9.8603 2.4866 39 1 1.4533 -11.3538 1.7878 40 1 2.0256 -11.7304 4.1515 41 1 3.6909 -11.1736 3.8585 42 1 4.5128 -14.0788 1.8436 43 1 5.1527 -12.5535 2.5018 44 1 3.0211 -12.8341 0.3328 45 1 4.7003 -12.2914 0.0967 46 1 3.2688 -10.3361 -2.1198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331680585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -153.255640 kcal Electronic energy + Delta-G solvation = -26185.035873 eV Core-core repulsion = 22392.855206 eV Total energy + Delta-G solvation = -3792.180667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10368 -39.22377 -38.13480 -35.62517 -34.71208 -32.45575 -32.31710 -31.44007 -29.97888 -28.51957 -26.75983 -25.51601 -24.14756 -23.87958 -22.87565 -20.61991 -20.28822 -18.85186 -17.88217 -17.65739 -16.83905 -16.34492 -16.32573 -15.90947 -15.49007 -15.21559 -15.13441 -14.82667 -14.60013 -14.38302 -14.13596 -13.92747 -13.39965 -13.31074 -13.08487 -12.72654 -12.61270 -12.57847 -12.11971 -11.99339 -11.74712 -11.62894 -11.27824 -11.09068 -11.04523 -11.01463 -10.97781 -10.77908 -10.75959 -10.41580 -10.27539 -9.83163 -9.75950 -9.42053 -9.10265 -8.93910 -8.26018 -6.52735 -6.24137 -3.94842 2.99089 3.05764 3.19709 3.26170 3.30536 3.54314 3.63983 3.73942 4.00206 4.15580 4.17991 4.37682 4.52778 4.68707 4.70360 4.76399 4.83679 4.88659 5.02363 5.07374 5.10287 5.11161 5.17035 5.21054 5.30882 5.34266 5.39349 5.42125 5.54609 5.59965 5.61014 5.66983 5.69192 5.75291 5.82478 5.86070 5.95963 5.99363 6.04765 6.10571 6.55800 6.87302 7.29774 7.57506 7.65734 8.33051 8.56884 9.21347 10.83340 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002049 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.432523 B =13662.680601 C =13775.750713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.129 3.871 15 C -0.136 4.136 16 H 0.088 0.912 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.053 4.053 20 C -0.145 4.145 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.058 3.942 24 C -0.129 4.129 25 C 0.119 3.881 26 H 0.064 0.936 27 O -0.560 6.560 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.562 -25.251 2.518 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C 0.004 3.996 15 C -0.155 4.155 16 H 0.106 0.894 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.053 4.053 20 C -0.182 4.182 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.019 4.019 24 C -0.166 4.166 25 C 0.059 3.941 26 H 0.082 0.918 27 O -0.365 6.365 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.551 -26.042 3.034 27.903 hybrid contribution 2.279 2.149 -0.624 3.194 sum 11.830 -23.893 2.411 26.770 Atomic orbital electron populations 1.70026 1.05951 1.27373 1.46918 1.25000 0.95041 0.99067 0.94541 0.86111 0.79566 0.81854 0.77919 1.19626 1.20557 1.20545 1.22902 0.94927 0.91617 1.58862 0.90882 1.85406 1.04941 0.96381 1.96714 1.23530 1.06567 0.95398 1.04891 1.20327 0.86524 0.86317 0.75128 1.90704 1.15381 1.85626 1.47480 1.45988 1.09917 1.05363 1.77981 1.21368 0.95191 0.80767 1.02238 1.22876 0.97429 0.95337 0.99853 0.89356 1.22480 1.00034 0.96774 0.96304 1.22619 0.97273 0.94551 1.01041 1.20887 0.95723 0.95429 0.93295 1.22116 0.98266 1.01713 0.96142 1.22623 0.99827 0.83372 0.95671 1.87922 1.53278 1.27251 1.61894 1.22679 0.89136 1.01147 0.88930 1.21859 1.02872 0.94266 0.97626 1.22262 0.96506 0.89566 0.85734 0.91809 1.86500 1.75641 1.58351 1.16031 0.92217 0.89246 0.89265 0.76844 0.91821 0.91481 0.90852 0.91150 0.91183 0.90935 0.90241 0.90675 0.88711 0.92911 0.89059 0.93246 0.91115 0.89989 0.77393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.63 7.85 -10.98 -0.09 9.55 16 12 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 13 N -0.74 -9.24 5.40 -60.29 -0.33 -9.56 16 14 C 0.13 1.37 4.74 -4.04 -0.02 1.35 16 15 C -0.14 -1.03 2.77 -89.29 -0.25 -1.28 16 16 H 0.09 0.65 7.96 -51.93 -0.41 0.24 16 17 C -0.12 -0.86 5.77 -24.88 -0.14 -1.00 16 18 C -0.12 -0.81 4.86 -25.00 -0.12 -0.93 16 19 C -0.05 -0.39 0.53 -154.01 -0.08 -0.47 16 20 C -0.14 -1.08 4.77 -26.87 -0.13 -1.21 16 21 C 0.06 0.46 6.63 37.27 0.25 0.71 16 22 O -0.38 -3.56 10.75 -35.23 -0.38 -3.94 16 23 C 0.06 0.42 6.65 37.27 0.25 0.67 16 24 C -0.13 -0.98 4.14 -26.88 -0.11 -1.10 16 25 C 0.12 0.90 3.35 -25.86 -0.09 0.82 16 26 H 0.06 0.51 7.36 -51.93 -0.38 0.13 16 27 O -0.56 -4.21 11.64 -35.23 -0.41 -4.62 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.90 8.36 -40.82 -0.34 3.56 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 34 H 0.07 0.59 7.28 -51.92 -0.38 0.21 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.45 6.14 -51.93 -0.32 0.14 16 37 H 0.07 0.51 7.97 -51.93 -0.41 0.09 16 38 H 0.08 0.58 7.33 -51.93 -0.38 0.20 16 39 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.35 6.48 -51.93 -0.34 0.02 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.33 7.49 -51.93 -0.39 -0.06 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.65 7.48 -51.93 -0.39 0.26 16 46 H 0.38 1.71 9.11 45.56 0.42 2.13 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -35.01 373.75 -8.67 -43.68 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.67 Total: 1.78 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.11 Total: -8.58 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.41 Total: -34.88 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.70 Total: -20.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.01 -8.67 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331680585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.576 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds