Wall clock time and date at job start Tue Mar 31 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48504 * 109.47198 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47215 * 299.99533 * 3 2 1 6 6 H 1.48497 * 109.47184 * 59.99704 * 3 2 1 7 7 C 1.38795 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00137 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47214 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00264 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99966 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00165 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47329 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.43374 * 305.69885 * 15 14 13 17 17 C 1.54920 * 110.59451 * 68.31177 * 15 14 13 18 18 C 1.54964 * 102.78703 * 156.48998 * 17 15 14 19 19 C 1.53945 * 104.10962 * 322.33979 * 18 17 15 20 20 C 1.52780 * 109.82746 * 142.87378 * 19 18 17 21 21 C 1.53171 * 109.17285 * 64.98441 * 20 19 18 22 22 O 1.42904 * 109.36850 * 56.92526 * 21 20 19 23 23 C 1.42911 * 114.19957 * 298.51055 * 22 21 20 24 24 C 1.52787 * 109.81234 * 263.98120 * 19 18 17 25 25 C 1.53525 * 106.94996 * 23.41127 * 19 18 17 26 26 H 1.08994 * 110.10139 * 119.34679 * 25 19 18 27 27 O 1.42902 * 110.05499 * 240.82790 * 25 19 18 28 28 H 0.97004 * 120.00135 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46872 * 59.99648 * 10 9 7 30 30 H 1.09001 * 109.47132 * 300.00374 * 10 9 7 31 31 H 0.97001 * 119.99995 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.47136 * 59.99215 * 14 13 11 33 33 H 1.09001 * 109.47113 * 299.99736 * 14 13 11 34 34 H 1.09000 * 110.74833 * 274.81084 * 17 15 14 35 35 H 1.08996 * 110.75062 * 38.16453 * 17 15 14 36 36 H 1.09005 * 110.50422 * 203.68267 * 18 17 15 37 37 H 1.09005 * 110.62199 * 81.05500 * 18 17 15 38 38 H 1.09003 * 109.52069 * 184.88970 * 20 19 18 39 39 H 1.09004 * 109.51890 * 305.07141 * 20 19 18 40 40 H 1.09001 * 109.48530 * 296.95764 * 21 20 19 41 41 H 1.09001 * 109.50427 * 176.90872 * 21 20 19 42 42 H 1.09003 * 109.48961 * 301.53717 * 23 22 21 43 43 H 1.09003 * 109.50773 * 181.48065 * 23 22 21 44 44 H 1.08999 * 109.52516 * 54.93370 * 24 19 18 45 45 H 1.09000 * 109.52530 * 175.05255 * 24 19 18 46 46 H 0.96702 * 113.99648 * 178.49276 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9875 -5.3026 0.0017 12 8 0.7913 -5.5023 0.0009 13 7 2.8443 -6.3430 0.0033 14 6 2.3306 -7.7150 0.0023 15 6 3.5027 -8.6984 0.0038 16 1 4.1785 -8.4863 -0.8247 17 6 4.2628 -8.6384 1.3524 18 6 4.9493 -10.0259 1.4213 19 6 3.9090 -10.9895 0.8218 20 6 4.6137 -12.0641 -0.0045 21 6 5.4770 -12.9257 0.9221 22 8 4.6562 -13.4866 1.9486 23 6 4.0247 -12.5180 2.7885 24 6 3.0986 -11.6391 1.9423 25 6 2.9886 -10.1517 -0.0771 26 1 3.0413 -10.5102 -1.1050 27 8 1.6428 -10.2225 0.3980 28 1 -0.4850 0.8401 -0.0004 29 1 3.1239 -3.7308 0.8925 30 1 3.1253 -3.7316 -0.8874 31 1 3.8011 -6.1833 0.0043 32 1 1.7236 -7.8750 -0.8887 33 1 1.7204 -7.8751 0.8912 34 1 5.0052 -7.8404 1.3420 35 1 3.5676 -8.5098 2.1820 36 1 5.1663 -10.2937 2.4554 37 1 5.8628 -10.0323 0.8266 38 1 3.8702 -12.6910 -0.4968 39 1 5.2462 -11.5900 -0.7551 40 1 6.2533 -12.3083 1.3739 41 1 5.9392 -13.7280 0.3470 42 1 4.7847 -11.8958 3.2612 43 1 3.4419 -13.0267 3.5564 44 1 2.6582 -10.8641 2.5698 45 1 2.3070 -12.2520 1.5112 46 1 1.0161 -9.6944 -0.1154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331680595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:30 Heat of formation + Delta-G solvation = -150.675164 kcal Electronic energy + Delta-G solvation = -26164.045208 eV Core-core repulsion = 22371.976438 eV Total energy + Delta-G solvation = -3792.068769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10335 -39.24249 -38.17803 -35.36317 -34.81728 -32.44930 -32.32804 -31.55167 -29.86077 -28.37456 -26.90255 -25.50560 -24.15628 -24.01407 -22.84531 -20.50055 -20.29646 -18.83314 -17.89754 -17.27324 -16.81683 -16.72026 -16.32601 -16.11500 -15.51473 -15.26726 -15.10944 -14.82069 -14.64258 -14.35096 -13.97067 -13.75752 -13.44702 -13.29552 -13.03143 -12.76214 -12.61465 -12.52027 -12.17556 -11.84604 -11.67478 -11.62613 -11.39574 -11.14771 -11.08522 -11.03669 -10.93227 -10.80564 -10.77013 -10.40295 -10.16416 -9.82656 -9.77358 -9.41432 -9.09566 -8.91218 -8.25122 -6.51849 -6.23496 -3.94093 2.99711 3.07379 3.20138 3.26541 3.30899 3.53108 3.64100 3.76850 4.05439 4.06297 4.18602 4.41950 4.52899 4.65589 4.70603 4.74597 4.82235 4.89145 4.99173 5.05817 5.09231 5.11756 5.17250 5.22153 5.24177 5.30230 5.36389 5.43880 5.54577 5.57939 5.60617 5.64888 5.67528 5.79530 5.81314 5.86736 5.94143 5.99957 6.10248 6.11395 6.57555 6.85239 7.36792 7.58099 7.67031 8.33657 8.58386 9.21954 10.83956 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.001999 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.603011 B =14001.829075 C =14327.290474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.127 3.873 15 C -0.137 4.137 16 H 0.086 0.914 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.054 4.054 20 C -0.145 4.145 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.055 3.945 24 C -0.126 4.126 25 C 0.121 3.879 26 H 0.060 0.940 27 O -0.558 6.558 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.141 -25.627 1.225 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.391 5.391 14 C 0.002 3.998 15 C -0.156 4.156 16 H 0.104 0.896 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.055 4.055 20 C -0.182 4.182 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.021 4.021 24 C -0.164 4.164 25 C 0.061 3.939 26 H 0.078 0.922 27 O -0.364 6.364 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.203 -26.455 1.687 28.779 hybrid contribution 2.247 2.138 -0.594 3.158 sum 13.450 -24.317 1.092 27.811 Atomic orbital electron populations 1.70029 1.05945 1.27360 1.46920 1.25002 0.95042 0.99063 0.94552 0.86110 0.79560 0.81864 0.77913 1.19634 1.20559 1.20553 1.22903 0.94926 0.91631 1.58850 0.90890 1.85406 1.04929 0.96357 1.96708 1.23526 1.06573 0.95429 1.04872 1.20311 0.86529 0.86293 0.75144 1.90703 1.15357 1.85614 1.47486 1.45951 1.09881 1.05337 1.77970 1.21217 0.95466 0.80718 1.02355 1.22940 0.97739 0.95565 0.99381 0.89554 1.22543 0.99090 0.96751 0.96834 1.22574 0.97463 0.94539 1.01236 1.20953 0.94442 0.94577 0.95489 1.22273 1.00028 0.97537 0.98395 1.22563 0.92247 0.97509 0.89161 1.87919 1.64438 1.33194 1.44783 1.22762 0.95349 0.91339 0.92677 1.21843 0.98070 0.99507 0.96943 1.22285 0.82685 0.92586 0.96366 0.92161 1.86531 1.17453 1.72991 1.59454 0.92222 0.89257 0.89292 0.76915 0.92045 0.90601 0.91235 0.90664 0.90971 0.91203 0.90810 0.90699 0.93079 0.88978 0.93151 0.88932 0.90227 0.90437 0.77123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.82 16 11 C 0.53 9.67 7.85 -10.99 -0.09 9.59 16 12 O -0.52 -11.54 15.86 5.56 0.09 -11.46 16 13 N -0.74 -9.30 5.42 -60.30 -0.33 -9.62 16 14 C 0.13 1.34 3.88 -4.04 -0.02 1.33 16 15 C -0.14 -1.04 2.88 -88.89 -0.26 -1.30 16 16 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.11 -0.85 6.12 -24.68 -0.15 -1.00 16 18 C -0.12 -0.78 4.78 -25.20 -0.12 -0.90 16 19 C -0.05 -0.39 0.63 -153.97 -0.10 -0.48 16 20 C -0.14 -0.91 4.55 -26.76 -0.12 -1.03 16 21 C 0.06 0.41 6.64 37.25 0.25 0.65 16 22 O -0.38 -3.46 10.75 -35.23 -0.38 -3.84 16 23 C 0.06 0.42 6.62 37.25 0.25 0.66 16 24 C -0.13 -1.02 3.90 -26.75 -0.10 -1.13 16 25 C 0.12 0.91 3.79 -25.75 -0.10 0.81 16 26 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 27 O -0.56 -4.92 10.65 -35.23 -0.38 -5.29 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.40 3.92 8.39 -40.82 -0.34 3.58 16 32 H 0.06 0.67 7.70 -51.93 -0.40 0.27 16 33 H 0.08 0.92 7.49 -51.93 -0.39 0.53 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.67 8.00 -51.93 -0.42 0.25 16 36 H 0.07 0.46 6.06 -51.93 -0.31 0.15 16 37 H 0.07 0.39 7.77 -51.93 -0.40 -0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.38 8.06 -51.93 -0.42 -0.04 16 40 H 0.05 0.29 7.46 -51.93 -0.39 -0.09 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.34 6.42 -51.93 -0.33 0.01 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 45 H 0.08 0.74 7.77 -51.93 -0.40 0.34 16 46 H 0.38 2.71 7.47 45.56 0.34 3.05 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -34.87 371.47 -8.82 -43.69 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.78 Total: 2.37 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.14 Total: -8.53 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.41 Total: -34.98 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.67 Total: -20.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.87 -8.82 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331680595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.988 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds