Wall clock time and date at job start Tue Mar 31 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46863 * 2 1 4 4 C 1.34945 * 126.03908 * 125.31499 * 3 2 1 5 5 C 1.35316 * 107.74957 * 180.14523 * 4 3 2 6 6 C 1.50700 * 126.04108 * 179.86981 * 5 4 3 7 7 H 1.09004 * 110.41928 * 27.02116 * 6 5 4 8 8 O 1.44427 * 110.37117 * 149.33499 * 6 5 4 9 9 C 1.44425 * 105.27199 * 159.34463 * 8 6 5 10 10 C 1.54476 * 104.80524 * 319.48520 * 9 8 6 11 11 C 1.54483 * 110.37181 * 264.71726 * 6 5 4 12 12 H 1.08993 * 110.62659 * 335.88691 * 11 6 5 13 13 N 1.46495 * 110.51097 * 98.54756 * 11 6 5 14 14 S 1.65602 * 119.99942 * 211.09579 * 13 11 6 15 15 O 1.42104 * 104.27484 * 308.92925 * 14 13 11 16 16 O 1.42097 * 104.28129 * 181.07367 * 14 13 11 17 17 C 1.81401 * 104.45139 * 64.99617 * 14 13 11 18 18 C 1.50694 * 109.47154 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 14 21 21 N 1.31518 * 119.99792 * 179.72330 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99795 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99997 * 22 20 18 25 25 H 1.48507 * 109.47015 * 329.99955 * 22 20 18 26 26 C 1.39871 * 107.91704 * 359.61163 * 5 4 3 27 27 N 1.30834 * 108.20264 * 0.23665 * 26 5 4 28 28 H 1.08994 * 109.47126 * 59.99996 * 1 2 3 29 29 H 1.09001 * 109.46765 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46740 * 299.99689 * 1 2 3 31 31 H 1.08999 * 109.46740 * 240.00311 * 2 1 3 32 32 H 1.08994 * 109.47126 * 120.00003 * 2 1 3 33 33 H 1.08002 * 126.12500 * 359.97438 * 4 3 2 34 34 H 1.08999 * 110.37146 * 200.65494 * 9 8 6 35 35 H 1.09002 * 110.37324 * 78.32265 * 9 8 6 36 36 H 1.09000 * 110.51632 * 265.33509 * 10 9 8 37 37 H 1.09005 * 110.50894 * 142.62382 * 10 9 8 38 38 H 0.97002 * 120.00728 * 31.09070 * 13 11 6 39 39 H 1.08998 * 109.46678 * 60.00327 * 17 14 13 40 40 H 1.09002 * 109.47098 * 300.00122 * 17 14 13 41 41 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 42 42 H 1.08005 * 125.89498 * 180.26915 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8777 1.9195 0.8904 5 6 3.0719 3.2136 0.5458 6 6 3.9558 4.1996 1.2651 7 1 4.7634 3.6804 1.7813 8 8 4.4926 5.1654 0.3350 9 6 4.8815 6.2970 1.1437 10 6 3.7498 6.4459 2.1845 11 6 3.1268 5.0343 2.2663 12 1 2.0787 5.0616 1.9682 13 7 3.2600 4.4921 3.6207 14 16 2.0051 4.6251 4.6930 15 8 1.6584 6.0028 4.6575 16 8 2.4958 4.0236 5.8832 17 6 0.6821 3.6171 3.9689 18 6 -0.5292 3.6598 4.8643 19 1 -0.5059 4.2361 5.7774 20 6 -1.6676 2.9632 4.5178 21 7 -2.7229 2.9961 5.3019 22 14 -1.7079 1.9659 2.9388 23 1 -1.2450 0.5822 3.2154 24 1 -3.0960 1.9277 2.4128 25 1 -0.8146 2.5950 1.9331 26 6 2.3119 3.4726 -0.5995 27 7 1.6801 2.3750 -0.9276 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3274 1.4097 1.7295 34 1 4.9533 7.1951 0.5302 35 1 5.8310 6.0995 1.6411 36 1 3.0103 7.1706 1.8438 37 1 4.1569 6.7403 3.1519 38 1 4.0832 4.0551 3.8895 39 1 1.0239 2.5870 3.8684 40 1 0.4214 4.0110 2.9866 41 1 -3.5238 2.5063 5.0579 42 1 2.2568 4.4157 -1.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332392786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:34 Heat of formation + Delta-G solvation = -38.121720 kcal Electronic energy + Delta-G solvation = -27549.997107 eV Core-core repulsion = 23659.268678 eV Total energy + Delta-G solvation = -3890.728429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33032 -39.44640 -36.29383 -35.18440 -34.72534 -34.53593 -33.29909 -31.24337 -30.31570 -29.94831 -29.82979 -26.89121 -23.89084 -23.18456 -23.06678 -21.42081 -20.74175 -20.13882 -18.86945 -17.69798 -17.27838 -16.86890 -16.45027 -15.80176 -15.56484 -15.42023 -15.12395 -14.85872 -14.42901 -14.19531 -14.00940 -13.98068 -13.43269 -12.92043 -12.82876 -12.71883 -12.62568 -12.43838 -12.34496 -12.16732 -11.70846 -11.48033 -11.41678 -11.32749 -11.25591 -11.11153 -10.95568 -10.85399 -10.58128 -10.34666 -9.99814 -9.90109 -9.70869 -9.41285 -9.12514 -8.89030 -8.36226 -6.36366 -4.45565 1.09886 1.87088 2.45598 2.74696 3.04074 3.15483 3.17860 3.35687 3.93480 4.15125 4.39309 4.46661 4.62214 4.72005 4.76507 4.82335 4.83730 4.93819 5.00997 5.05766 5.08773 5.12438 5.24211 5.33864 5.43288 5.53443 5.57755 5.64602 5.70733 5.83366 6.01713 6.04088 6.08526 6.09115 6.24914 6.28586 6.64533 6.76436 6.96945 7.14854 7.22839 7.70997 7.95273 8.55312 9.18625 10.74155 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.007490 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.481776 B = 3737.214426 C = 6266.065285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.132 3.868 3 N -0.369 5.369 4 C 0.071 3.929 5 C -0.241 4.241 6 C 0.157 3.843 7 H 0.080 0.920 8 O -0.363 6.363 9 C 0.045 3.955 10 C -0.170 4.170 11 C 0.131 3.869 12 H 0.102 0.898 13 N -1.121 6.121 14 S 2.603 3.397 15 O -0.968 6.968 16 O -0.973 6.973 17 C -0.469 4.469 18 C -0.532 4.532 19 H 0.086 0.914 20 C 0.089 3.911 21 N -0.879 5.879 22 Si 0.877 3.123 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.258 1.258 26 C 0.072 3.928 27 N -0.295 5.295 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.271 0.729 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.069 -2.765 -12.183 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 N -0.151 5.151 4 C -0.076 4.076 5 C -0.253 4.253 6 C 0.097 3.903 7 H 0.098 0.902 8 O -0.281 6.281 9 C -0.032 4.032 10 C -0.210 4.210 11 C 0.022 3.978 12 H 0.120 0.880 13 N -0.877 5.877 14 S 2.701 3.299 15 O -0.958 6.958 16 O -0.963 6.963 17 C -0.603 4.603 18 C -0.571 4.571 19 H 0.104 0.896 20 C -0.117 4.117 21 N -0.515 5.515 22 Si 0.703 3.297 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.183 1.183 26 C -0.115 4.115 27 N -0.116 5.116 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.192 0.808 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.243 0.757 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 12.893 -2.958 -12.465 18.176 hybrid contribution 0.448 -0.774 -0.251 0.929 sum 13.340 -3.733 -12.716 18.804 Atomic orbital electron populations 1.22187 0.93860 1.03090 1.04104 1.21696 0.96195 0.77323 1.03691 1.48651 1.35016 1.10296 1.21157 1.22216 0.95159 0.94179 0.96061 1.19601 1.08793 0.94381 1.02499 1.21168 0.92974 0.88279 0.87887 0.90216 1.89160 1.81413 1.27404 1.30108 1.23425 0.96876 0.89905 0.93005 1.23447 0.98956 0.97688 1.00885 1.22088 1.01530 0.92175 0.82007 0.88049 1.56010 1.32311 1.74529 1.24848 1.05246 0.74909 0.75999 0.73759 1.93508 1.83925 1.32097 1.86281 1.93510 1.79083 1.79436 1.44312 1.28191 1.13736 1.09749 1.08650 1.20075 0.94928 1.34312 1.07773 0.89611 1.24889 0.94780 0.95293 0.96756 1.69867 1.03540 1.40992 1.37051 0.86822 0.78186 0.80819 0.83839 1.19665 1.20640 1.18296 1.23702 0.94515 0.97444 0.95793 1.77333 1.23392 0.96979 1.13873 0.90857 0.90509 0.91882 0.89671 0.88541 0.80818 0.88868 0.92220 0.89497 0.89251 0.75730 0.90394 0.90008 0.91869 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.10 37.16 0.38 -1.69 16 2 C 0.13 1.36 7.23 -4.04 -0.03 1.33 16 3 N -0.37 -4.95 3.68 -61.37 -0.23 -5.17 16 4 C 0.07 0.88 11.36 -17.22 -0.20 0.69 16 5 C -0.24 -3.16 5.11 -105.05 -0.54 -3.70 16 6 C 0.16 1.85 3.47 -27.10 -0.09 1.76 16 7 H 0.08 0.80 7.81 -51.93 -0.41 0.39 16 8 O -0.36 -4.33 11.03 -35.23 -0.39 -4.72 16 9 C 0.04 0.44 7.63 37.93 0.29 0.73 16 10 C -0.17 -2.00 6.88 -25.16 -0.17 -2.17 16 11 C 0.13 1.74 3.07 -66.36 -0.20 1.54 16 12 H 0.10 1.48 6.97 -51.93 -0.36 1.12 16 13 N -1.12 -15.78 5.37 -3.56 -0.02 -15.80 16 14 S 2.60 51.81 5.32 -107.50 -0.57 51.23 16 15 O -0.97 -21.81 17.82 -57.54 -1.03 -22.83 16 16 O -0.97 -21.82 18.08 -57.54 -1.04 -22.86 16 17 C -0.47 -10.34 4.80 36.00 0.17 -10.16 16 18 C -0.53 -14.74 9.68 -34.44 -0.33 -15.07 16 19 H 0.09 2.57 7.96 -52.49 -0.42 2.15 16 20 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 21 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 22 Si 0.88 20.39 25.43 -169.99 -4.32 16.07 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 26 C 0.07 1.01 11.61 -17.37 -0.20 0.81 16 27 N -0.30 -4.48 12.42 30.63 0.38 -4.10 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.94 5.90 -51.93 -0.31 0.63 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.06 7.97 -51.93 -0.41 0.65 16 38 H 0.41 4.56 8.57 -34.47 -0.30 4.27 16 39 H 0.08 1.57 7.57 -51.93 -0.39 1.17 16 40 H 0.08 1.73 6.53 -51.92 -0.34 1.39 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -36.47 360.88 -7.93 -44.40 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.90 Total: 7.14 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.03 Total: -23.55 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.91 Total: -50.33 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -2.45 Total: -50.41 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.32 Total: 16.07 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.57 Total: 51.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.47 -7.93 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332392786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.283 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds