Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 C 1.50698 * 109.47127 * 180.02562 * 15 13 12 17 17 C 1.38312 * 119.80861 * 269.72555 * 16 15 13 18 18 C 1.38391 * 119.82227 * 179.77114 * 17 16 15 19 19 C 1.37679 * 119.91645 * 0.47765 * 18 17 16 20 20 C 1.38896 * 120.80589 * 359.77321 * 19 18 17 21 21 C 1.37934 * 119.81844 * 89.99655 * 16 15 13 22 22 N 1.39534 * 110.22993 * 179.97438 * 20 19 18 23 23 C 1.34370 * 112.24727 * 359.97438 * 22 20 19 24 24 O 1.21282 * 126.44785 * 180.02562 * 23 22 20 25 25 C 1.51137 * 132.85310 * 179.76601 * 19 18 17 26 26 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 27 27 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 28 28 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 30 30 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 31 31 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 32 32 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 33 33 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 34 34 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 35 35 H 1.07993 * 120.08435 * 0.02562 * 17 16 15 36 36 H 1.08004 * 120.04578 * 180.24889 * 18 17 16 37 37 H 1.08000 * 119.92908 * 359.97438 * 21 16 15 38 38 H 0.96996 * 123.87786 * 179.97438 * 22 20 19 39 39 H 1.08996 * 110.51146 * 298.65382 * 25 19 18 40 40 H 1.09005 * 110.50788 * 61.21730 * 25 19 18 41 41 H 1.09004 * 109.60829 * 295.48016 * 26 12 11 42 42 H 1.08995 * 109.61517 * 174.97194 * 26 12 11 43 43 H 1.09001 * 109.60662 * 354.94142 * 27 9 7 44 44 H 1.08998 * 109.61756 * 115.28412 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 6 7.4459 -1.9549 5.2238 17 6 7.5413 -2.9350 6.1951 18 6 8.7732 -3.2390 6.7474 19 6 9.8971 -2.5586 6.3356 20 6 9.8135 -1.5687 5.3649 21 6 8.5702 -1.2715 4.8099 22 7 11.0756 -1.0274 5.1178 23 6 12.0300 -1.5965 5.8733 24 8 13.2117 -1.3235 5.8676 25 6 11.3530 -2.6433 6.7323 26 6 4.5005 -3.2084 1.5123 27 6 4.1992 -2.2929 0.3191 28 1 -0.4850 0.8400 -0.0004 29 1 4.2586 0.1714 1.7186 30 1 2.5201 0.1137 2.1099 31 1 2.7995 -1.9334 3.3902 32 1 4.0688 -0.8087 3.9359 33 1 6.0852 -0.5780 4.3263 34 1 5.3199 -1.8157 5.3513 35 1 6.6574 -3.4645 6.5186 36 1 8.8525 -4.0065 7.5032 37 1 8.4868 -0.5048 4.0539 38 1 11.2447 -0.3214 4.4745 39 1 11.4754 -2.4064 7.7891 40 1 11.7507 -3.6349 6.5157 41 1 3.6505 -3.8667 1.6921 42 1 5.3890 -3.8034 1.3016 43 1 3.8352 -2.8898 -0.5171 44 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332689063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = 4.443406 kcal Electronic energy + Delta-G solvation = -27461.842340 eV Core-core repulsion = 23573.348817 eV Total energy + Delta-G solvation = -3888.493523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70134 -39.98832 -38.68164 -37.13500 -36.06869 -34.00998 -33.19081 -31.79222 -30.99277 -30.17545 -29.89858 -27.46988 -26.14877 -23.53163 -23.26573 -23.05112 -21.84920 -21.34299 -20.44067 -18.80955 -17.99197 -17.33258 -16.94270 -16.34083 -16.25379 -16.07607 -15.62949 -15.33679 -14.89909 -14.68084 -14.35880 -14.34975 -14.01285 -13.77537 -13.59390 -13.27647 -13.13618 -12.98845 -12.71893 -12.66568 -12.27147 -12.19168 -11.99866 -11.80537 -11.25164 -11.09973 -11.01589 -10.86458 -10.54069 -10.52521 -10.43386 -10.25029 -9.62997 -9.56596 -8.96252 -8.79074 -8.29301 -8.27592 -7.09456 -6.16894 -3.35804 0.88725 1.05455 2.14546 2.68197 2.79698 3.18003 3.29282 3.42060 3.47191 3.57331 3.78708 4.08694 4.44712 4.47813 4.53298 4.74171 4.77568 4.84084 5.00106 5.03680 5.12487 5.16603 5.19239 5.33471 5.46519 5.51965 5.55004 5.61168 5.74077 5.82174 5.84004 6.00103 6.04093 6.09231 6.18528 6.23375 6.37523 6.43785 6.45051 6.51000 6.67876 6.73810 6.85600 7.62280 7.68741 7.80620 8.17808 8.36918 8.80996 9.59466 9.99247 10.97421 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.002539 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.947254 B =11026.729105 C =11495.634461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.040 3.960 3 Si 0.834 3.166 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.276 4.276 8 H 0.083 0.917 9 N -0.599 5.599 10 C 0.131 3.869 11 C 0.084 3.916 12 N -0.599 5.599 13 C 0.512 3.488 14 O -0.547 6.547 15 C -0.105 4.105 16 C -0.023 4.023 17 C -0.121 4.121 18 C -0.065 4.065 19 C -0.147 4.147 20 C 0.139 3.861 21 C -0.120 4.120 22 N -0.659 5.659 23 C 0.529 3.471 24 O -0.510 6.510 25 C -0.113 4.113 26 C 0.097 3.903 27 C 0.132 3.868 28 H 0.264 0.736 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.413 0.587 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.235 -3.986 15.559 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.162 4.162 3 Si 0.661 3.339 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.403 4.403 8 H 0.100 0.900 9 N -0.323 5.323 10 C 0.004 3.996 11 C -0.040 4.040 12 N -0.332 5.332 13 C 0.300 3.700 14 O -0.425 6.425 15 C -0.145 4.145 16 C -0.024 4.024 17 C -0.140 4.140 18 C -0.084 4.084 19 C -0.150 4.150 20 C 0.042 3.958 21 C -0.141 4.141 22 N -0.302 5.302 23 C 0.317 3.683 24 O -0.385 6.385 25 C -0.152 4.152 26 C -0.027 4.027 27 C 0.005 3.995 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.251 0.749 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 16.196 -4.259 15.420 22.764 hybrid contribution 0.227 1.586 -0.634 1.723 sum 16.423 -2.673 14.785 22.259 Atomic orbital electron populations 1.70119 1.06223 1.27000 1.48303 1.25212 0.94784 0.97448 0.98747 0.87611 0.82036 0.86092 0.78146 1.21972 1.21992 1.18300 1.18767 0.96443 0.96912 1.28215 0.89970 1.44298 1.18070 1.42739 1.27158 1.21786 0.99658 0.92195 0.85971 1.22624 0.91003 0.91719 0.98701 1.48040 1.17806 1.38977 1.28328 1.20348 0.81546 0.83824 0.84292 1.90686 1.43775 1.38006 1.70032 1.20750 0.95613 1.01424 0.96732 1.19016 0.93373 0.95062 0.94968 1.20925 0.97623 0.97886 0.97610 1.20184 0.90479 0.98402 0.99286 1.19746 0.94961 0.99788 1.00469 1.18009 0.85534 0.95177 0.97066 1.20168 0.89313 1.02891 1.01756 1.43732 1.06735 1.38718 1.41001 1.20626 0.85266 0.82232 0.80207 1.90816 1.14062 1.65932 1.67718 1.21029 0.91871 1.00576 1.01755 1.22195 1.01282 0.93599 0.85631 1.21348 0.91842 0.91758 0.94507 0.92661 0.94995 0.90365 0.90739 0.90670 0.87756 0.87541 0.85285 0.85266 0.85674 0.74902 0.86045 0.85966 0.91471 0.89718 0.90744 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.97 55.49 0.78 -24.34 16 2 C 0.04 1.07 4.80 -17.43 -0.08 0.99 16 3 Si 0.83 19.92 26.47 -169.99 -4.50 15.42 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -5.81 4.99 56.52 0.28 -5.52 16 7 C -0.28 -7.19 9.84 -15.06 -0.15 -7.34 16 8 H 0.08 2.30 8.05 -52.49 -0.42 1.87 16 9 N -0.60 -13.17 2.71 -171.76 -0.47 -13.63 16 10 C 0.13 2.52 4.58 -3.36 -0.02 2.50 16 11 C 0.08 1.25 6.52 -3.36 -0.02 1.23 16 12 N -0.60 -9.27 2.95 -172.21 -0.51 -9.78 16 13 C 0.51 7.47 7.69 -10.98 -0.08 7.38 16 14 O -0.55 -9.68 15.44 5.55 0.09 -9.59 16 15 C -0.11 -1.09 4.16 -29.03 -0.12 -1.21 16 16 C -0.02 -0.24 4.36 -104.71 -0.46 -0.70 16 17 C -0.12 -1.14 9.71 -39.50 -0.38 -1.52 16 18 C -0.07 -0.54 10.03 -39.73 -0.40 -0.94 16 19 C -0.15 -1.33 6.35 -104.37 -0.66 -1.99 16 20 C 0.14 1.39 7.11 -83.69 -0.60 0.80 16 21 C -0.12 -1.26 9.71 -39.27 -0.38 -1.64 16 22 N -0.66 -6.18 5.88 -9.70 -0.06 -6.24 16 23 C 0.53 5.49 8.71 -10.83 -0.09 5.39 16 24 O -0.51 -6.97 18.03 5.56 0.10 -6.87 16 25 C -0.11 -0.85 6.88 -28.48 -0.20 -1.05 16 26 C 0.10 1.59 6.59 -3.60 -0.02 1.57 16 27 C 0.13 2.47 6.67 -3.60 -0.02 2.45 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 30 H 0.08 1.62 5.60 -51.93 -0.29 1.33 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.84 5.91 -51.93 -0.31 0.53 16 33 H 0.10 0.94 7.66 -51.93 -0.40 0.54 16 34 H 0.11 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.41 3.19 8.96 -40.82 -0.37 2.83 16 39 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.38 6.99 -51.93 -0.36 1.01 16 43 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -33.59 357.30 -8.83 -42.41 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.96 Total: 1.32 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -3.69 Total: 5.92 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.25 Total: -54.00 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.19 Total: -16.46 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.50 Total: 15.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.59 -8.83 -42.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332689063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.858 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds