Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86801 * 119.99747 * 2 1 4 4 H 1.48507 * 109.46972 * 239.99562 * 3 2 1 5 5 H 1.48489 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47171 * 120.00169 * 3 2 1 7 7 C 1.40045 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99955 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00233 * 5.23137 * 9 7 2 11 11 N 1.34778 * 119.99783 * 185.23426 * 9 7 2 12 12 C 1.46960 * 120.59105 * 174.82040 * 11 9 7 13 13 C 1.53374 * 108.63270 * 235.24209 * 12 11 9 14 14 N 1.46964 * 108.63430 * 310.57755 * 13 12 11 15 15 C 1.34782 * 120.59189 * 235.19853 * 14 13 12 16 16 O 1.21281 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99864 * 180.02562 * 15 14 13 18 18 H 1.09002 * 110.25723 * 302.05752 * 17 15 14 19 19 C 1.54332 * 110.29054 * 180.02562 * 17 15 14 20 20 C 1.54374 * 102.56627 * 267.30646 * 19 17 15 21 21 C 1.51528 * 104.97027 * 333.95044 * 20 19 17 22 22 C 1.38740 * 130.61468 * 197.05150 * 21 20 19 23 23 C 1.38579 * 118.55759 * 179.79431 * 22 21 20 24 24 C 1.38220 * 118.99094 * 359.97438 * 23 22 21 25 25 N 1.31693 * 120.80070 * 0.02562 * 24 23 22 26 26 C 1.32288 * 122.03172 * 359.97438 * 25 24 23 27 27 C 1.46962 * 118.81230 * 55.47745 * 14 13 12 28 28 C 1.46964 * 120.59406 * 354.83592 * 11 9 7 29 29 H 0.96996 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.61229 * 115.50028 * 12 11 9 31 31 H 1.08997 * 109.61241 * 354.98443 * 12 11 9 32 32 H 1.09002 * 109.61214 * 190.82954 * 13 12 11 33 33 H 1.09002 * 109.74686 * 70.40221 * 13 12 11 34 34 H 1.09000 * 110.82923 * 25.62674 * 19 17 15 35 35 H 1.09006 * 110.82061 * 148.98884 * 19 17 15 36 36 H 1.08998 * 110.31328 * 92.71903 * 20 19 17 37 37 H 1.09000 * 110.31300 * 214.89980 * 20 19 17 38 38 H 1.07995 * 120.71760 * 359.76930 * 22 21 20 39 39 H 1.08001 * 120.50265 * 180.02562 * 23 22 21 40 40 H 1.08000 * 119.59811 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.61237 * 64.26677 * 27 14 13 42 42 H 1.09007 * 109.61034 * 184.77542 * 27 14 13 43 43 H 1.09005 * 109.61144 * 244.49749 * 28 11 9 44 44 H 1.09002 * 109.61200 * 5.00904 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2756 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0621 -2.4828 -0.0960 11 7 1.9447 -3.6452 0.1075 12 6 1.2185 -4.9176 0.2229 13 6 1.6954 -5.6411 1.4884 14 7 3.1649 -5.6613 1.4922 15 6 3.8346 -6.8260 1.6001 16 8 3.2244 -7.8699 1.6948 17 6 5.3416 -6.8312 1.6031 18 1 5.7224 -6.3712 0.6912 19 6 5.8716 -8.2746 1.7356 20 6 6.0509 -8.4278 3.2613 21 6 6.2709 -7.0186 3.7729 22 6 6.7885 -6.5657 4.9779 23 6 6.8830 -5.1990 5.1864 24 6 6.4605 -4.3386 4.1906 25 7 5.9742 -4.8041 3.0588 26 6 5.8677 -6.1012 2.8216 27 6 3.8911 -4.3884 1.3824 28 6 3.4142 -3.6655 0.1113 29 1 -0.4850 0.8400 -0.0004 30 1 1.4230 -5.5361 -0.6510 31 1 0.1484 -4.7230 0.2941 32 1 1.3154 -6.6627 1.4910 33 1 1.3346 -5.1143 2.3719 34 1 5.1427 -8.9914 1.3574 35 1 6.8257 -8.3859 1.2203 36 1 5.1527 -8.8553 3.7068 37 1 6.9168 -9.0527 3.4796 38 1 7.1104 -7.2633 5.7369 39 1 7.2815 -4.8120 6.1127 40 1 6.5301 -3.2716 4.3426 41 1 3.6831 -3.7719 2.2569 42 1 4.9616 -4.5825 1.3149 43 1 3.7751 -4.1949 -0.7706 44 1 3.7942 -2.6439 0.1087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333535757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -11.184772 kcal Electronic energy + Delta-G solvation = -28733.571516 eV Core-core repulsion = 24844.400304 eV Total energy + Delta-G solvation = -3889.171212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37086 -39.55275 -38.00641 -36.23699 -35.61358 -33.31474 -32.73019 -32.43276 -30.94001 -29.55227 -28.56730 -27.17558 -25.89846 -23.72875 -23.34282 -22.76858 -21.82005 -21.26429 -19.56364 -18.46035 -17.57286 -16.98623 -16.42624 -16.01801 -15.97388 -15.49351 -15.29640 -14.74227 -14.67121 -14.43515 -14.16898 -13.92006 -13.65339 -13.63068 -13.34925 -13.17396 -12.76039 -12.52040 -12.16219 -11.99931 -11.79520 -11.61855 -11.46049 -11.40016 -11.24400 -11.08685 -10.95923 -10.81369 -10.68807 -10.25708 -10.08426 -10.01029 -9.75329 -9.41429 -8.89002 -8.84796 -8.56532 -7.61581 -7.18673 -6.22230 -4.67510 0.85032 1.06539 2.64545 3.13771 3.14194 3.19278 3.20744 3.57058 3.76827 4.06729 4.14463 4.48937 4.51979 4.54047 4.61332 4.66281 4.71820 4.90226 4.99319 5.13426 5.33718 5.41043 5.45884 5.48863 5.53658 5.60534 5.63836 5.68291 5.80009 5.84974 5.86666 5.96402 6.00195 6.03301 6.07510 6.24417 6.36873 6.44715 6.49313 6.60772 6.81059 7.42893 7.54794 7.63936 7.77895 8.09207 8.27413 8.31400 8.99385 9.39085 10.54441 10.72851 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.003718 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.604197 B = 7528.650382 C = 8859.317388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.577 6.577 11 N -0.643 5.643 12 C 0.110 3.890 13 C 0.098 3.902 14 N -0.595 5.595 15 C 0.525 3.475 16 O -0.548 6.548 17 C -0.060 4.060 18 H 0.115 0.885 19 C -0.105 4.105 20 C -0.078 4.078 21 C -0.140 4.140 22 C -0.067 4.067 23 C -0.169 4.169 24 C 0.104 3.896 25 N -0.466 5.466 26 C 0.122 3.878 27 C 0.090 3.910 28 C 0.107 3.893 29 H 0.269 0.731 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.161 0.839 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.044 0.956 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.196 -12.459 8.377 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.459 6.459 11 N -0.381 5.381 12 C -0.015 4.015 13 C -0.025 4.025 14 N -0.327 5.327 15 C 0.312 3.688 16 O -0.427 6.427 17 C -0.082 4.082 18 H 0.133 0.867 19 C -0.143 4.143 20 C -0.115 4.115 21 C -0.142 4.142 22 C -0.093 4.093 23 C -0.189 4.189 24 C -0.053 4.053 25 N -0.174 5.174 26 C -0.015 4.015 27 C -0.034 4.034 28 C -0.018 4.018 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.062 0.938 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.710 -12.261 7.727 21.373 hybrid contribution 0.859 0.495 0.838 1.298 sum 16.569 -11.766 8.565 22.053 Atomic orbital electron populations 1.69998 1.07092 1.27459 1.35088 1.25721 0.94602 1.00289 0.92560 0.86454 0.79866 0.81093 0.79501 1.19202 1.20577 1.19205 1.20919 0.93520 0.89181 1.54425 0.90880 1.18277 0.86910 0.82150 0.76105 1.90592 1.14419 1.85996 1.54941 1.48180 1.04580 1.05824 1.79538 1.21476 0.99071 0.86227 0.94763 1.22102 0.79002 1.01867 0.99542 1.48110 1.07311 1.06750 1.70518 1.20055 0.88768 0.83547 0.76453 1.90641 1.69343 1.31400 1.51319 1.20782 0.93271 0.97068 0.97124 0.86688 1.22269 1.01989 0.94165 0.95843 1.21043 1.02656 0.92252 0.95567 1.21551 0.99552 0.97983 0.95088 1.21064 0.96646 0.95773 0.95828 1.22108 1.01922 0.93855 1.01039 1.22739 0.93741 1.00597 0.88219 1.66976 1.13069 1.15007 1.22339 1.21317 0.95832 0.88998 0.95382 1.22747 0.97330 0.83734 0.99551 1.21949 0.82983 1.01961 0.94915 0.92002 0.93588 0.88698 0.89103 0.91497 0.88067 0.90037 0.89413 0.90151 0.85020 0.84507 0.82158 0.90967 0.87379 0.93787 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.76 11.84 55.55 0.66 -22.10 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.54 -14.93 8.88 -35.63 -0.32 -15.24 16 8 H 0.07 1.81 5.63 -52.49 -0.30 1.51 16 9 C 0.56 15.77 7.61 -12.98 -0.10 15.67 16 10 O -0.58 -18.56 14.47 5.20 0.08 -18.48 16 11 N -0.64 -14.62 2.95 -173.88 -0.51 -15.13 16 12 C 0.11 2.22 6.58 -3.60 -0.02 2.19 16 13 C 0.10 1.75 6.59 -3.60 -0.02 1.73 16 14 N -0.60 -9.88 2.94 -172.21 -0.51 -10.39 16 15 C 0.53 8.15 7.09 -10.98 -0.08 8.07 16 16 O -0.55 -9.66 14.87 5.56 0.08 -9.58 16 17 C -0.06 -0.73 2.36 -91.84 -0.22 -0.94 16 18 H 0.12 1.24 7.65 -51.93 -0.40 0.84 16 19 C -0.10 -1.00 6.36 -25.31 -0.16 -1.16 16 20 C -0.08 -0.71 6.79 -26.76 -0.18 -0.89 16 21 C -0.14 -1.49 6.16 -104.05 -0.64 -2.13 16 22 C -0.07 -0.60 10.17 -39.27 -0.40 -1.00 16 23 C -0.17 -1.45 10.12 -39.46 -0.40 -1.85 16 24 C 0.10 1.07 11.18 -17.62 -0.20 0.88 16 25 N -0.47 -5.87 7.41 -9.19 -0.07 -5.94 16 26 C 0.12 1.50 5.93 -82.04 -0.49 1.01 16 27 C 0.09 1.45 5.09 -3.37 -0.02 1.43 16 28 C 0.11 1.98 6.52 -3.37 -0.02 1.96 16 29 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 2.10 7.02 -51.93 -0.36 1.74 16 32 H 0.09 1.55 6.99 -51.93 -0.36 1.19 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.07 6.97 -51.93 -0.36 0.71 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 42 H 0.11 1.53 4.03 -51.93 -0.21 1.32 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.11 1.99 5.29 -51.93 -0.27 1.72 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -35.84 351.30 -8.99 -44.83 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.63 Total: 4.79 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -3.36 Total: 12.05 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.43 Total: -53.56 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: 0.16 Total: -28.06 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.84 -8.99 -44.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333535757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.642 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds