Wall clock time and date at job start Tue Mar 31 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00020 * 2 1 4 4 C 1.53000 * 109.46971 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47660 * 65.00064 * 4 3 2 6 6 C 1.46500 * 119.99997 * 275.00283 * 5 4 3 7 7 C 1.50701 * 109.47152 * 279.99054 * 6 5 4 8 8 H 1.07998 * 120.00054 * 4.25903 * 7 6 5 9 9 C 1.37881 * 120.00480 * 184.26051 * 7 6 5 10 10 N 1.31519 * 119.99563 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00303 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47052 * 89.99860 * 11 9 7 13 13 H 1.48495 * 109.47037 * 209.99864 * 11 9 7 14 14 H 1.48505 * 109.47159 * 329.99827 * 11 9 7 15 15 S 1.65596 * 120.00353 * 94.99718 * 5 4 3 16 16 O 1.42099 * 106.40171 * 330.09307 * 15 5 4 17 17 O 1.42107 * 106.40573 * 197.17240 * 15 5 4 18 18 N 1.65602 * 107.21775 * 83.63037 * 15 5 4 19 19 C 1.46498 * 119.99758 * 65.22243 * 18 15 5 20 20 C 1.50702 * 109.47269 * 165.46781 * 19 18 15 21 21 C 1.38218 * 119.61937 * 95.01605 * 20 19 18 22 22 C 1.38630 * 119.16104 * 179.74791 * 21 20 19 23 23 C 1.38675 * 118.41796 * 0.47514 * 22 21 20 24 24 C 1.38176 * 119.16233 * 359.50743 * 23 22 21 25 25 N 1.31861 * 119.61267 * 275.00003 * 20 19 18 26 26 H 1.08992 * 109.46703 * 299.99793 * 1 2 3 27 27 H 1.08996 * 109.47229 * 60.00111 * 1 2 3 28 28 H 1.09008 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47141 * 60.00098 * 3 2 1 30 30 H 1.09001 * 109.47191 * 299.99849 * 3 2 1 31 31 H 1.08998 * 109.47376 * 304.99668 * 4 3 2 32 32 H 1.09002 * 109.47274 * 184.99852 * 4 3 2 33 33 H 1.09006 * 109.47551 * 39.98734 * 6 5 4 34 34 H 1.09004 * 109.47626 * 159.98753 * 6 5 4 35 35 H 0.96996 * 119.99777 * 179.97438 * 10 9 7 36 36 H 0.97000 * 119.99755 * 245.21732 * 18 15 5 37 37 H 1.08999 * 109.47483 * 45.46295 * 19 18 15 38 38 H 1.09001 * 109.46760 * 285.46639 * 19 18 15 39 39 H 1.07998 * 120.42100 * 359.95449 * 21 20 19 40 40 H 1.07998 * 120.79081 * 180.23119 * 22 21 20 41 41 H 1.07996 * 120.42078 * 179.77819 * 23 22 21 42 42 H 1.08004 * 119.61618 * 180.25797 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0004 -0.8950 -1.3781 7 6 5.2428 -1.4351 -0.7178 8 1 5.9087 -0.7670 -0.1920 9 6 5.5294 -2.7821 -0.7851 10 7 4.7181 -3.5958 -1.4250 11 14 7.0696 -3.4513 0.0328 12 1 6.7580 -3.8407 1.4316 13 1 7.5513 -4.6396 -0.7162 14 1 8.1241 -2.4056 0.0333 15 16 4.4455 1.5129 -2.5262 16 8 3.7030 2.7200 -2.4228 17 8 4.4192 0.6805 -3.6777 18 7 6.0320 1.9170 -2.2775 19 6 7.0638 0.8771 -2.2929 20 6 8.4228 1.5194 -2.4019 21 6 9.1547 1.7683 -1.2562 22 6 10.4059 2.3546 -1.3679 23 6 10.8720 2.6793 -2.6330 24 6 10.0838 2.4001 -3.7331 25 7 8.8999 1.8371 -3.5894 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8463 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8409 32 1 3.9786 2.1764 0.0889 33 1 3.1193 -1.3164 -0.8940 34 1 4.0013 -1.1692 -2.4332 35 1 4.9199 -4.5433 -1.4727 36 1 6.2781 2.8422 -2.1216 37 1 6.9035 0.2188 -3.1466 38 1 7.0089 0.2972 -1.3716 39 1 8.7583 1.5062 -0.2864 40 1 11.0018 2.5574 -0.4903 41 1 11.8406 3.1405 -2.7572 42 1 10.4414 2.6460 -4.7221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336893209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:59 Heat of formation + Delta-G solvation = -81.027008 kcal Electronic energy + Delta-G solvation = -27076.688135 eV Core-core repulsion = 23184.099193 eV Total energy + Delta-G solvation = -3892.588942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.16774 -37.68840 -36.60102 -35.37005 -35.13927 -35.02911 -32.53746 -32.43884 -31.06550 -29.44183 -26.75565 -25.99728 -25.61667 -23.50907 -22.80820 -21.96106 -21.68931 -18.86055 -17.43488 -17.11545 -16.67468 -16.52886 -16.14450 -15.91122 -15.66053 -15.60133 -15.03250 -14.78905 -14.42431 -14.31000 -13.76538 -13.49926 -13.34752 -13.01057 -12.66115 -12.52532 -12.28487 -12.01536 -11.89718 -11.84606 -11.60594 -11.38206 -11.24039 -11.15788 -11.05639 -10.83887 -10.59427 -10.36811 -10.02268 -9.91811 -9.74729 -9.39338 -9.24551 -9.09066 -9.01633 -8.41547 -7.97044 -6.03509 -4.09284 0.96126 1.24130 1.41452 3.27268 3.33273 3.35499 3.51201 3.87084 4.20429 4.21870 4.32368 4.40225 4.71915 4.78442 5.02060 5.10396 5.16412 5.30270 5.38338 5.45875 5.47998 5.58590 5.67417 5.69299 5.74122 5.82982 5.85612 5.93770 5.97993 6.12527 6.23101 6.31226 6.37913 6.62734 6.68161 7.29598 7.53649 7.59294 7.62044 7.82453 7.96004 8.02838 8.25920 8.94240 9.54694 11.04508 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.005242 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.954298 B = 5339.802642 C = 7097.825531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.984 5.984 6 C 0.242 3.758 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 S 2.783 3.217 16 O -1.002 7.002 17 O -0.972 6.972 18 N -1.124 6.124 19 C 0.168 3.832 20 C 0.127 3.873 21 C -0.156 4.156 22 C -0.079 4.079 23 C -0.178 4.178 24 C 0.096 3.904 25 N -0.469 5.469 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.406 0.594 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 12.448 3.308 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.010 3.990 5 N -0.826 5.826 6 C 0.120 3.880 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.523 5.523 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 S 2.791 3.209 16 O -0.987 6.987 17 O -0.956 6.956 18 N -0.882 5.882 19 C 0.042 3.958 20 C -0.012 4.012 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.198 4.198 24 C -0.062 4.062 25 N -0.179 5.179 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.571 11.926 1.711 12.886 hybrid contribution 1.663 0.229 1.664 2.364 sum 6.234 12.155 3.375 14.071 Atomic orbital electron populations 1.22698 0.82437 1.02405 0.99084 1.88104 1.18369 1.27040 1.95149 1.23115 0.95427 0.85195 0.99906 1.21044 0.91353 0.97489 0.89111 1.57671 1.78451 1.19422 1.27019 1.19342 0.98204 0.71353 0.99101 1.21520 1.08231 0.92967 1.35010 0.92066 1.24923 0.96577 0.96976 0.95242 1.69939 1.36727 1.04185 1.41399 0.86680 0.83445 0.78856 0.79471 1.20721 1.21214 1.19838 1.01840 0.72492 0.72390 0.74137 1.93540 1.69613 1.47724 1.87779 1.93591 1.86124 1.68557 1.47294 1.55976 1.25564 1.15801 1.90860 1.20303 0.81247 0.88699 1.05550 1.21441 0.96497 0.94947 0.88267 1.22118 0.95415 0.99804 1.00301 1.21591 0.95366 0.95674 0.97858 1.22139 1.01496 1.02349 0.93794 1.22797 0.89870 0.94425 0.99075 1.67588 1.13534 1.10051 1.26698 0.94852 0.94615 0.89880 0.93307 0.93065 0.89058 0.90578 0.92771 0.92961 0.92689 0.76292 0.88422 0.87886 0.84262 0.84882 0.85004 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.75 8.99 -35.23 -0.32 -7.07 16 3 C 0.04 0.69 6.28 37.16 0.23 0.92 16 4 C 0.14 2.31 5.75 -4.04 -0.02 2.29 16 5 N -0.98 -19.89 2.83 -115.66 -0.33 -20.22 16 6 C 0.24 5.95 5.32 -5.19 -0.03 5.92 16 7 C -0.54 -13.53 8.51 -34.44 -0.29 -13.82 16 8 H 0.06 1.43 6.45 -52.49 -0.34 1.09 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.88 -25.24 13.29 55.43 0.74 -24.50 16 11 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 15 S 2.78 55.35 6.07 -107.50 -0.65 54.70 16 16 O -1.00 -20.21 17.17 -57.17 -0.98 -21.19 16 17 O -0.97 -23.26 16.01 -57.17 -0.92 -24.17 16 18 N -1.12 -18.66 6.05 -11.66 -0.07 -18.73 16 19 C 0.17 2.94 6.51 -5.19 -0.03 2.90 16 20 C 0.13 1.96 6.17 -82.59 -0.51 1.45 16 21 C -0.16 -1.98 9.72 -39.44 -0.38 -2.36 16 22 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 23 C -0.18 -1.77 10.11 -39.44 -0.40 -2.16 16 24 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 25 N -0.47 -7.31 10.27 -9.47 -0.10 -7.41 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.86 7.96 -51.93 -0.41 0.44 16 31 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 32 H 0.08 1.05 7.78 -51.93 -0.40 0.65 16 33 H 0.05 1.43 6.56 -51.93 -0.34 1.09 16 34 H 0.05 1.45 6.78 -51.93 -0.35 1.10 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.41 5.70 8.64 -34.47 -0.30 5.40 16 37 H 0.10 1.94 7.76 -51.93 -0.40 1.54 16 38 H 0.10 1.84 5.75 -51.93 -0.30 1.54 16 39 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -33.73 366.63 -8.92 -42.65 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.79 Total: 7.10 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.02 Total: -1.92 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: 0.24 Total: -70.87 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -2.21 Total: -52.43 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 55.35 SS G_CDS: -0.65 Total: 54.70 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.73 -8.92 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336893209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.375 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds