Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47203 * 2 1 4 4 C 1.46505 * 120.00180 * 275.00121 * 3 2 1 5 5 C 1.50706 * 109.46681 * 275.00041 * 4 3 2 6 6 H 1.07999 * 120.00076 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99588 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00035 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 120.00167 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47009 * 89.99727 * 9 7 5 11 11 H 1.48497 * 109.46845 * 210.00305 * 9 7 5 12 12 H 1.48496 * 109.46801 * 330.00074 * 9 7 5 13 13 S 1.65608 * 120.00154 * 94.99983 * 3 2 1 14 14 O 1.42104 * 106.39670 * 336.45714 * 13 3 2 15 15 O 1.42101 * 106.40096 * 203.54105 * 13 3 2 16 16 N 1.65589 * 107.21718 * 89.99894 * 13 3 2 17 17 C 1.47323 * 121.11288 * 270.04807 * 16 13 3 18 18 C 1.53325 * 109.15412 * 116.63226 * 17 16 13 19 19 N 1.46266 * 109.21055 * 45.59488 * 18 17 16 20 20 N 1.39849 * 128.08167 * 161.81335 * 19 18 17 21 21 C 1.30953 * 106.63661 * 179.37110 * 20 19 18 22 22 C 1.50701 * 125.49830 * 180.17616 * 21 20 19 23 23 N 1.33494 * 109.00535 * 0.14313 * 21 20 19 24 24 C 1.30221 * 109.67382 * 0.11737 * 23 21 20 25 25 C 1.47490 * 120.97750 * 90.00481 * 16 13 3 26 26 H 1.09001 * 109.47459 * 299.99988 * 1 2 3 27 27 H 1.09006 * 109.47114 * 59.99700 * 1 2 3 28 28 H 1.08994 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47459 * 240.00012 * 2 1 3 30 30 H 1.09002 * 109.47231 * 119.99553 * 2 1 3 31 31 H 1.09000 * 109.46670 * 34.99603 * 4 3 2 32 32 H 1.08993 * 109.47148 * 155.00228 * 4 3 2 33 33 H 0.97000 * 120.00174 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47485 * 356.75491 * 17 16 13 35 35 H 1.08994 * 109.55516 * 236.55958 * 17 16 13 36 36 H 1.09004 * 109.51481 * 285.67820 * 18 17 16 37 37 H 1.09000 * 109.55587 * 165.54313 * 18 17 16 38 38 H 1.09001 * 109.47145 * 269.95912 * 22 21 20 39 39 H 1.08991 * 109.46986 * 29.96245 * 22 21 20 40 40 H 1.09003 * 109.47220 * 149.96214 * 22 21 20 41 41 H 1.09002 * 109.94474 * 103.67844 * 25 16 13 42 42 H 1.08994 * 109.94085 * 342.52428 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1116 -1.3835 7 6 3.8525 2.3606 -3.0848 8 7 5.0191 2.0818 -3.6243 9 14 2.6802 3.5312 -3.9479 10 1 2.9435 4.9201 -3.4929 11 1 2.8853 3.4439 -5.4160 12 1 1.2801 3.1602 -3.6207 13 16 2.4122 2.1203 1.4287 14 8 1.6867 1.4415 2.4448 15 8 2.3057 3.5187 1.1998 16 7 4.0143 1.8137 1.7137 17 6 4.4386 0.6241 2.4722 18 6 5.2704 -0.2844 1.5591 19 7 6.2399 0.5286 0.8253 20 7 7.3995 0.1048 0.1684 21 6 7.9444 1.1732 -0.3572 22 6 9.2158 1.1994 -1.1659 23 7 7.1917 2.2353 -0.0617 24 6 6.1680 1.8624 0.6514 25 6 5.0619 2.7241 1.2146 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1802 -1.0756 33 1 5.2706 2.4838 -4.4705 34 1 3.5592 0.0830 2.8212 35 1 5.0412 0.9319 3.3266 36 1 4.6127 -0.7919 0.8535 37 1 5.7974 -1.0237 2.1622 38 1 10.0661 1.3520 -0.5012 39 1 9.3313 0.2519 -1.6920 40 1 9.1696 2.0135 -1.8894 41 1 5.4455 3.3336 2.0328 42 1 4.6554 3.3653 0.4325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336899574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = 28.689258 kcal Electronic energy + Delta-G solvation = -28558.808323 eV Core-core repulsion = 24703.269786 eV Total energy + Delta-G solvation = -3855.538537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.75378 -37.28755 -37.00542 -36.29463 -35.52415 -33.35006 -32.65467 -31.81727 -30.33479 -29.79114 -28.25515 -27.21880 -25.21889 -23.55450 -23.00640 -21.65763 -20.45716 -19.73016 -18.38037 -17.50405 -17.21317 -16.86350 -16.61899 -16.06439 -15.69580 -14.98756 -14.46590 -14.26319 -14.13629 -13.87308 -13.54069 -13.32836 -13.06659 -12.82169 -12.72576 -12.58396 -12.46148 -12.16566 -12.11012 -12.03104 -11.78974 -11.64308 -11.63051 -11.31895 -11.27430 -11.19307 -11.03944 -10.58244 -10.50218 -10.22658 -9.61594 -9.46950 -9.40823 -9.06395 -8.77257 -8.63893 -8.23740 -6.13207 -4.16083 0.88530 2.10319 2.61925 3.07611 3.25709 3.32150 3.35105 3.44695 3.78284 4.22465 4.34445 4.46060 4.59858 4.71980 5.02504 5.09757 5.15593 5.20888 5.27853 5.37248 5.48995 5.54293 5.56020 5.63441 5.71311 5.86432 5.87386 5.92004 6.12141 6.14845 6.22389 6.33035 6.43289 6.50737 6.78291 6.85520 6.98264 7.02893 7.23753 7.27496 7.50690 8.38657 8.66691 8.87281 9.45316 10.97832 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.007867 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.503954 B = 3558.479668 C = 5328.772091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.984 5.984 4 C 0.215 3.785 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.083 3.917 8 N -0.879 5.879 9 Si 0.865 3.135 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.265 1.265 13 S 2.787 3.213 14 O -0.986 6.986 15 O -0.970 6.970 16 N -1.012 6.012 17 C 0.108 3.892 18 C 0.116 3.884 19 N -0.371 5.371 20 N -0.323 5.323 21 C 0.227 3.773 22 C -0.052 4.052 23 N -0.519 5.519 24 C 0.290 3.710 25 C 0.213 3.787 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.264 0.736 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 -4.270 10.498 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.824 5.824 4 C 0.091 3.909 5 C -0.586 4.586 6 H 0.095 0.905 7 C -0.122 4.122 8 N -0.515 5.515 9 Si 0.692 3.308 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.190 1.190 13 S 2.796 3.204 14 O -0.970 6.970 15 O -0.954 6.954 16 N -0.849 5.849 17 C -0.019 4.019 18 C -0.009 4.009 19 N -0.162 5.162 20 N -0.151 5.151 21 C -0.055 4.055 22 C -0.111 4.111 23 N -0.247 5.247 24 C 0.011 3.989 25 C 0.085 3.915 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.166 -4.170 10.764 11.545 hybrid contribution -0.484 0.203 -1.002 1.131 sum -0.650 -3.968 9.762 10.557 Atomic orbital electron populations 1.22207 0.96614 1.01701 1.02393 1.21032 0.93798 0.82478 1.02430 1.57580 1.78166 1.23174 1.23530 1.19623 0.98492 0.91954 0.80810 1.21298 1.00672 1.29874 1.06720 0.90530 1.24811 0.94769 0.95819 0.96806 1.69904 1.20102 1.43034 1.18458 0.87025 0.82078 0.82444 0.79238 1.19679 1.21140 1.19011 1.01899 0.72100 0.73573 0.72871 1.93556 1.69637 1.76405 1.57417 1.93590 1.85394 1.30479 1.85910 1.58675 1.25247 1.33496 1.67449 1.21822 1.00496 0.86083 0.93526 1.22118 0.89714 0.93813 0.95207 1.49762 1.18780 1.06556 1.41113 1.77788 0.97807 1.22604 1.16940 1.24170 0.97838 0.85803 0.97652 1.19989 0.89275 1.03958 0.97888 1.70066 1.05856 1.31254 1.17535 1.24040 0.95877 0.84042 0.94911 1.19977 0.83259 0.88865 0.99420 0.92497 0.92161 0.92033 0.89891 0.91820 0.94495 0.94060 0.92587 0.86540 0.89576 0.89244 0.88214 0.90677 0.90456 0.89524 0.88280 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.13 2.00 6.06 -4.04 -0.02 1.98 16 3 N -0.98 -18.32 2.83 -115.66 -0.33 -18.65 16 4 C 0.21 4.76 4.50 -5.19 -0.02 4.74 16 5 C -0.55 -14.03 9.94 -34.44 -0.34 -14.37 16 6 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.88 -25.51 13.96 55.43 0.77 -24.74 16 9 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 S 2.79 49.55 6.09 -107.50 -0.65 48.90 16 14 O -0.99 -17.25 15.77 -57.17 -0.90 -18.15 16 15 O -0.97 -20.01 15.64 -57.17 -0.89 -20.90 16 16 N -1.01 -15.73 3.36 -113.89 -0.38 -16.11 16 17 C 0.11 1.28 6.46 -3.42 -0.02 1.25 16 18 C 0.12 1.55 7.46 -4.00 -0.03 1.52 16 19 N -0.37 -6.72 4.03 -58.26 -0.23 -6.96 16 20 N -0.32 -6.38 12.73 32.51 0.41 -5.97 16 21 C 0.23 4.50 8.15 -156.43 -1.27 3.23 16 22 C -0.05 -0.79 10.51 36.01 0.38 -0.41 16 23 N -0.52 -11.00 11.18 -7.99 -0.09 -11.09 16 24 C 0.29 5.60 7.85 -155.77 -1.22 4.38 16 25 C 0.21 3.60 6.66 -4.46 -0.03 3.57 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 30 H 0.06 0.84 7.61 -51.93 -0.40 0.44 16 31 H 0.04 0.81 7.16 -51.93 -0.37 0.44 16 32 H 0.04 0.96 6.34 -51.93 -0.33 0.63 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.12 1.17 7.00 -51.93 -0.36 0.80 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.13 2.54 7.50 -51.93 -0.39 2.15 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -34.42 358.61 -9.96 -44.37 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.09 Total: 1.92 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.31 Total: 6.06 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: 0.15 Total: -83.52 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.80 Total: -39.05 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 49.55 SS G_CDS: -0.65 Total: 48.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.42 -9.96 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336899574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.064 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds