Wall clock time and date at job start Tue Mar 31 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.46846 * 2 1 4 4 C 1.46496 * 120.00103 * 274.99986 * 3 2 1 5 5 C 1.50704 * 109.47015 * 280.16165 * 4 3 2 6 6 H 1.08002 * 120.00197 * 4.61083 * 5 4 3 7 7 C 1.37877 * 120.00012 * 184.61638 * 5 4 3 8 8 N 1.31516 * 119.99594 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00166 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47389 * 89.99840 * 9 7 5 11 11 H 1.48507 * 109.46970 * 209.99959 * 9 7 5 12 12 H 1.48499 * 109.46881 * 329.99816 * 9 7 5 13 13 S 1.65604 * 119.99822 * 95.00140 * 3 2 1 14 14 O 1.42103 * 106.40288 * 330.03653 * 13 3 2 15 15 O 1.42096 * 106.40106 * 197.11950 * 13 3 2 16 16 N 1.65602 * 107.21846 * 83.57702 * 13 3 2 17 17 C 1.46497 * 119.99757 * 65.28667 * 16 13 3 18 18 C 1.53007 * 109.46887 * 165.94759 * 17 16 13 19 19 N 1.46497 * 109.46887 * 179.97438 * 18 17 16 20 20 C 1.35759 * 119.62562 * 90.00611 * 19 18 17 21 21 C 1.35354 * 120.70499 * 180.27101 * 20 19 18 22 22 C 1.40196 * 119.94390 * 359.43862 * 21 20 19 23 23 C 1.36393 * 119.26539 * 0.57254 * 22 21 20 24 24 C 1.34657 * 119.62702 * 270.02092 * 19 18 17 25 25 O 1.22063 * 119.98431 * 0.02562 * 24 19 18 26 26 H 1.08995 * 109.47202 * 60.00249 * 1 2 3 27 27 H 1.09007 * 109.46662 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47457 * 299.99735 * 1 2 3 29 29 H 1.08995 * 109.47457 * 240.00265 * 2 1 3 30 30 H 1.09003 * 109.47464 * 119.99699 * 2 1 3 31 31 H 1.09000 * 109.46974 * 40.15475 * 4 3 2 32 32 H 1.08993 * 109.46964 * 160.16012 * 4 3 2 33 33 H 0.97004 * 119.99587 * 180.02562 * 8 7 5 34 34 H 0.97007 * 119.99711 * 245.28558 * 16 13 3 35 35 H 1.08998 * 109.47469 * 45.95647 * 17 16 13 36 36 H 1.08997 * 109.47495 * 285.95228 * 17 16 13 37 37 H 1.09003 * 109.46806 * 60.00115 * 18 17 16 38 38 H 1.08997 * 109.47436 * 300.00505 * 18 17 16 39 39 H 1.08005 * 119.64463 * 0.02562 * 20 19 18 40 40 H 1.07996 * 120.02177 * 179.69614 * 21 20 19 41 41 H 1.08002 * 120.36308 * 180.31057 * 22 21 20 42 42 H 1.08001 * 120.34649 * 179.73903 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4371 1.6928 -1.9440 6 1 4.0438 0.9068 -1.5191 7 6 3.8327 2.3158 -3.1086 8 7 3.0936 3.2726 -3.6262 9 14 5.4182 1.8007 -3.9513 10 1 5.1324 0.7144 -4.9225 11 1 5.9989 2.9649 -4.6675 12 1 6.3839 1.3137 -2.9337 13 16 2.4121 2.1203 1.4287 14 8 1.5757 1.5439 2.4225 15 8 2.4531 3.5152 1.1610 16 7 3.9612 1.6701 1.8028 17 6 5.0727 2.0875 0.9445 18 6 6.3966 1.8542 1.6752 19 7 7.5081 2.2711 0.8168 20 6 7.9591 3.5502 0.8765 21 6 8.9811 3.9602 0.0894 22 6 9.5925 3.0564 -0.7909 23 6 9.1378 1.7718 -0.8498 24 6 8.0707 1.3812 -0.0228 25 8 7.6537 0.2349 -0.0657 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.3114 1.8793 -1.9108 32 1 2.1840 3.1802 -1.0654 33 1 3.3718 3.7107 -4.4458 34 1 4.1326 1.1300 2.5901 35 1 4.9706 3.1463 0.7070 36 1 5.0588 1.5054 0.0231 37 1 6.4988 0.7954 1.9128 38 1 6.4106 2.4363 2.5967 39 1 7.4949 4.2491 1.5566 40 1 9.3278 4.9816 0.1424 41 1 10.4118 3.3750 -1.4184 42 1 9.5933 1.0622 -1.5246 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336899790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:57 Heat of formation + Delta-G solvation = -75.997073 kcal Electronic energy + Delta-G solvation = -27518.028077 eV Core-core repulsion = 23625.657250 eV Total energy + Delta-G solvation = -3892.370828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25042 -36.81253 -36.71783 -36.13421 -35.90510 -35.25670 -33.76614 -32.70857 -29.92561 -29.88109 -28.54942 -26.63008 -24.25024 -23.42349 -23.15666 -21.99620 -21.64796 -19.01955 -17.62375 -17.28663 -16.92767 -16.88714 -16.54946 -16.28834 -15.93397 -15.39824 -14.85887 -14.53900 -14.46367 -14.26005 -14.03019 -13.72778 -13.28948 -12.91137 -12.53951 -12.39378 -12.08569 -12.02040 -12.01709 -11.83903 -11.69726 -11.62365 -11.45635 -11.40249 -11.32333 -11.05447 -10.89617 -10.52512 -10.36804 -10.09889 -10.00297 -9.82256 -9.79642 -9.10789 -8.49830 -8.07377 -7.92352 -6.11623 -4.18164 0.85692 1.23251 1.93987 2.62897 3.27022 3.34065 3.42374 3.52342 3.73057 4.11542 4.38454 4.55672 4.61341 4.83235 4.87442 5.10626 5.13488 5.21933 5.24823 5.31757 5.35523 5.41827 5.68516 5.78750 5.86498 5.95862 6.01337 6.08449 6.16345 6.28132 6.33662 6.35152 6.56185 6.67709 6.71775 7.12499 7.18971 7.35862 7.43276 7.66318 7.85821 8.13852 8.15162 8.87278 9.48676 10.95866 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011269 B = 0.005713 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.168143 B = 4899.926644 C = 6302.634203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.266 1.266 13 S 2.787 3.213 14 O -0.998 6.998 15 O -0.978 6.978 16 N -1.129 6.129 17 C 0.104 3.896 18 C 0.086 3.914 19 N -0.492 5.492 20 C 0.137 3.863 21 C -0.237 4.237 22 C -0.020 4.020 23 C -0.242 4.242 24 C 0.514 3.486 25 O -0.544 6.544 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.407 0.593 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.163 0.837 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 -0.042 9.901 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.190 1.190 13 S 2.794 3.206 14 O -0.982 6.982 15 O -0.961 6.961 16 N -0.887 5.887 17 C -0.023 4.023 18 C -0.038 4.038 19 N -0.203 5.203 20 C 0.010 3.990 21 C -0.260 4.260 22 C -0.041 4.041 23 C -0.264 4.264 24 C 0.316 3.684 25 O -0.426 6.426 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.180 0.820 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.401 0.033 10.071 13.115 hybrid contribution 1.258 -0.599 -0.678 1.549 sum 9.659 -0.566 9.393 13.485 Atomic orbital electron populations 1.22207 0.96869 1.01371 1.02472 1.20966 0.93669 0.82766 1.02127 1.57700 1.78411 1.23053 1.24045 1.19227 0.97272 0.92495 0.78893 1.21538 1.07353 1.20220 1.08781 0.91805 1.24905 0.96978 0.94650 0.96969 1.69939 1.38040 1.23853 1.20718 0.86715 0.83987 0.78187 0.80173 1.20550 1.21134 1.19015 1.01735 0.72438 0.73722 0.72682 1.93559 1.65087 1.79816 1.59696 1.93575 1.86449 1.30901 1.85199 1.55940 1.25055 1.70165 1.37550 1.21660 0.83900 1.02300 0.94433 1.22165 0.84963 1.03814 0.92824 1.45416 1.29557 1.10279 1.35027 1.22013 0.94087 0.85274 0.97625 1.20619 1.01389 1.01568 1.02397 1.21413 0.96301 0.92559 0.93848 1.22126 1.00777 0.98570 1.04961 1.17157 0.84591 0.85488 0.81185 1.90969 1.64968 1.18286 1.68371 0.92089 0.92404 0.92478 0.90084 0.92163 0.94709 0.92620 0.92630 0.76074 0.89853 0.88439 0.87749 0.88746 0.81980 0.83802 0.84990 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.31 6.02 -4.04 -0.02 2.29 16 3 N -0.99 -20.27 2.84 -115.66 -0.33 -20.60 16 4 C 0.24 5.98 5.46 -5.19 -0.03 5.95 16 5 C -0.54 -14.07 8.48 -34.44 -0.29 -14.36 16 6 H 0.06 1.65 6.49 -52.49 -0.34 1.31 16 7 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 8 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 9 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 S 2.79 53.67 6.07 -107.50 -0.65 53.02 16 14 O -1.00 -19.75 17.17 -57.17 -0.98 -20.73 16 15 O -0.98 -22.03 16.02 -57.17 -0.92 -22.94 16 16 N -1.13 -17.40 6.06 -10.61 -0.06 -17.47 16 17 C 0.10 1.71 6.53 -4.04 -0.03 1.68 16 18 C 0.09 1.09 5.47 -4.04 -0.02 1.07 16 19 N -0.49 -6.81 2.58 -119.77 -0.31 -7.12 16 20 C 0.14 1.46 10.28 -16.84 -0.17 1.28 16 21 C -0.24 -2.33 10.01 -39.88 -0.40 -2.73 16 22 C -0.02 -0.22 10.10 -39.51 -0.40 -0.61 16 23 C -0.24 -3.49 9.99 -39.38 -0.39 -3.88 16 24 C 0.51 8.75 7.41 -15.45 -0.11 8.64 16 25 O -0.54 -11.27 16.64 4.86 0.08 -11.19 16 26 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.08 1.45 8.09 -51.93 -0.42 1.03 16 30 H 0.06 0.94 7.79 -51.93 -0.40 0.53 16 31 H 0.03 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.06 1.51 6.77 -51.93 -0.35 1.16 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.41 4.91 8.65 -34.47 -0.30 4.61 16 35 H 0.08 1.45 7.76 -51.93 -0.40 1.04 16 36 H 0.10 1.96 5.85 -51.93 -0.30 1.66 16 37 H 0.10 1.36 7.39 -51.93 -0.38 0.97 16 38 H 0.09 0.84 8.01 -51.93 -0.42 0.42 16 39 H 0.16 1.14 8.04 -52.48 -0.42 0.72 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -35.62 366.61 -9.35 -44.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.82 Total: 6.11 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.59 Total: -1.25 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 0.03 Total: -69.74 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -1.82 Total: -54.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 53.67 SS G_CDS: -0.65 Total: 53.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.62 -9.35 -44.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336899790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.035 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds