Wall clock time and date at job start Tue Mar 31 2020 04:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47297 * 119.99905 * 9 7 5 12 12 H 1.48506 * 109.47188 * 240.00204 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 C 1.38817 * 120.75864 * 89.99418 * 18 17 16 20 20 C 1.38051 * 119.28959 * 180.02562 * 19 18 17 21 21 N 1.31960 * 120.83521 * 0.02562 * 20 19 18 22 22 C 1.32244 * 121.64688 * 359.97438 * 21 20 19 23 23 O 1.35678 * 119.68616 * 179.97438 * 22 21 20 24 24 C 1.42903 * 116.99988 * 359.97438 * 23 22 21 25 25 C 1.38383 * 120.75258 * 269.72058 * 18 17 16 26 26 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 27 27 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 28 28 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 30 30 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 31 31 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 32 32 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 33 33 H 0.96999 * 119.99728 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 35 35 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 36 36 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 37 37 H 1.08006 * 120.35959 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.57919 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46955 * 60.00098 * 24 23 22 40 40 H 1.08997 * 109.47303 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.46858 * 300.00345 * 24 23 22 42 42 H 1.08003 * 120.44579 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 3.0285 3.1868 -3.6911 9 14 5.5093 1.9641 -3.8513 10 1 6.2448 1.0152 -2.9772 11 1 5.3018 1.3473 -5.1861 12 1 6.2981 3.2135 -4.0004 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.3869 2.2654 1.4754 19 6 7.1820 1.1393 1.3119 20 6 8.4146 1.0872 1.9314 21 7 8.8416 2.0912 2.6736 22 6 8.1132 3.1803 2.8531 23 8 8.5911 4.1887 3.6249 24 6 9.8823 4.0031 4.2084 25 6 6.8658 3.3041 2.2543 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1802 -1.0757 33 1 3.2803 3.5893 -4.5369 34 1 4.2771 1.2773 2.4782 35 1 5.0449 1.7849 -0.1128 36 1 4.8084 3.4005 0.5956 37 1 6.8397 0.3125 0.7072 38 1 9.0372 0.2135 1.8070 39 1 10.6209 3.8630 3.4191 40 1 10.1439 4.8813 4.7986 41 1 9.8671 3.1236 4.8519 42 1 6.2755 4.1970 2.3989 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336909373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:49 Heat of formation + Delta-G solvation = -78.239632 kcal Electronic energy + Delta-G solvation = -26841.554193 eV Core-core repulsion = 22949.086121 eV Total energy + Delta-G solvation = -3892.468072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.65726 -38.11249 -36.70214 -36.10208 -35.37831 -35.23053 -32.79254 -31.94127 -30.73100 -29.97633 -27.49833 -26.74100 -25.82238 -23.43784 -23.19412 -21.85723 -21.62537 -18.93045 -18.12377 -17.19841 -17.10482 -16.77892 -16.53118 -16.08426 -15.93672 -15.58233 -15.12030 -14.53074 -14.47624 -14.17712 -13.87921 -13.52283 -13.30873 -13.01514 -12.91894 -12.64306 -12.18280 -12.12517 -12.00411 -11.72819 -11.69670 -11.50625 -11.45095 -11.35039 -11.27460 -11.11449 -10.99791 -10.54009 -10.46235 -10.08852 -9.87735 -9.71904 -9.69436 -9.03053 -8.57505 -8.54400 -8.10971 -6.19105 -4.26640 1.00162 1.16987 1.41929 3.01173 3.18526 3.26475 3.28409 3.49014 3.80120 4.14971 4.25201 4.28232 4.66159 4.98676 5.07205 5.09656 5.13402 5.15073 5.16843 5.24774 5.39064 5.45289 5.63269 5.69929 5.74600 5.82385 5.87911 5.96919 6.09760 6.27609 6.31193 6.40632 6.47767 6.64127 6.66793 7.16923 7.22315 7.33644 7.41040 7.62601 7.78433 7.78630 8.07018 8.77286 9.39358 10.88605 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004739 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.261465 B = 5906.947412 C = 7540.576200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.546 4.546 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.787 3.213 14 O -0.999 6.999 15 O -0.978 6.978 16 N -1.126 6.126 17 C 0.148 3.852 18 C -0.009 4.009 19 C -0.192 4.192 20 C 0.133 3.867 21 N -0.543 5.543 22 C 0.314 3.686 23 O -0.309 6.309 24 C 0.042 3.958 25 C -0.173 4.173 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 -4.748 10.478 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.795 3.205 14 O -0.983 6.983 15 O -0.961 6.961 16 N -0.884 5.884 17 C 0.023 3.977 18 C -0.019 4.019 19 C -0.213 4.213 20 C -0.022 4.022 21 N -0.267 5.267 22 C 0.135 3.865 23 O -0.216 6.216 24 C -0.054 4.054 25 C -0.195 4.195 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.215 -3.763 11.155 14.355 hybrid contribution 0.837 -0.731 -0.908 1.435 sum 9.051 -4.493 10.247 14.392 Atomic orbital electron populations 1.22208 0.96958 1.01391 1.02403 1.20970 0.93655 0.82805 1.02131 1.57721 1.78476 1.23002 1.24124 1.19224 0.97339 0.92340 0.79062 1.21613 1.02327 1.28286 1.06258 0.91454 1.24933 0.97098 0.94730 0.96816 1.69933 1.35834 1.29424 1.16981 0.86624 0.83980 0.78411 0.79547 1.19477 1.20880 1.20770 1.01712 0.72480 0.73713 0.72644 1.93553 1.70260 1.76305 1.58154 1.93578 1.85747 1.31090 1.85716 1.56008 1.25217 1.68523 1.38618 1.20624 0.82200 1.02079 0.92828 1.20312 0.96076 0.92315 0.93153 1.22030 0.96006 0.99747 1.03559 1.22350 0.93706 0.95162 0.90984 1.67267 1.36331 1.02013 1.21096 1.19799 0.90100 0.86552 0.90047 1.86249 1.35771 1.38303 1.61282 1.22816 0.82230 1.02479 0.97829 1.21111 0.95234 1.01980 1.01137 0.92664 0.92058 0.92363 0.90172 0.91900 0.94277 0.93041 0.92521 0.76056 0.87017 0.88836 0.84026 0.82371 0.92419 0.88811 0.92455 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.15 6.06 -4.05 -0.02 2.13 16 3 N -0.99 -19.21 2.82 -115.67 -0.33 -19.54 16 4 C 0.24 5.63 5.43 -5.19 -0.03 5.60 16 5 C -0.55 -13.03 8.06 -34.44 -0.28 -13.31 16 6 H 0.07 1.50 5.82 -52.49 -0.31 1.20 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.88 -24.06 13.29 55.43 0.74 -23.32 16 9 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 10 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 S 2.79 52.96 6.10 -107.50 -0.66 52.31 16 14 O -1.00 -19.72 17.11 -57.17 -0.98 -20.69 16 15 O -0.98 -21.98 16.15 -57.17 -0.92 -22.90 16 16 N -1.13 -17.65 6.05 -11.66 -0.07 -17.72 16 17 C 0.15 2.41 6.07 -5.19 -0.03 2.37 16 18 C -0.01 -0.13 5.31 -104.35 -0.55 -0.69 16 19 C -0.19 -2.43 9.81 -39.44 -0.39 -2.81 16 20 C 0.13 1.57 11.18 -17.56 -0.20 1.38 16 21 N -0.54 -7.31 9.22 -13.33 -0.12 -7.44 16 22 C 0.31 4.46 7.49 -17.12 -0.13 4.33 16 23 O -0.31 -4.09 10.48 -18.74 -0.20 -4.29 16 24 C 0.04 0.40 10.38 101.05 1.05 1.45 16 25 C -0.17 -2.50 9.75 -39.27 -0.38 -2.88 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 30 H 0.06 0.92 7.61 -51.93 -0.40 0.53 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.41 5.39 8.64 -34.47 -0.30 5.09 16 35 H 0.11 1.95 4.82 -51.93 -0.25 1.70 16 36 H 0.09 1.65 7.70 -51.93 -0.40 1.25 16 37 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 39 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 42 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -31.03 366.29 -8.50 -39.53 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.79 Total: 7.16 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.68 Total: -3.02 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: 0.22 Total: -68.01 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.10 Total: -47.88 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.66 Total: 52.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.03 -8.50 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.710 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds