Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46494 * 109.46807 * 2 1 4 4 C 1.46499 * 120.00224 * 274.99600 * 3 2 1 5 5 C 1.50696 * 109.47324 * 280.12346 * 4 3 2 6 6 H 1.08001 * 120.00336 * 4.10430 * 5 4 3 7 7 C 1.37878 * 120.00031 * 184.10323 * 5 4 3 8 8 N 1.31513 * 119.99951 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47055 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47115 * 119.99706 * 9 7 5 12 12 H 1.48497 * 109.47119 * 240.00021 * 9 7 5 13 13 S 1.65606 * 120.00093 * 95.00048 * 3 2 1 14 14 O 1.42104 * 106.40039 * 330.09495 * 13 3 2 15 15 O 1.42098 * 106.40127 * 197.17543 * 13 3 2 16 16 N 1.65599 * 107.21736 * 83.63473 * 13 3 2 17 17 C 1.46499 * 120.00350 * 65.44309 * 16 13 3 18 18 C 1.52992 * 109.47472 * 165.63040 * 17 16 13 19 19 N 1.46498 * 109.47491 * 180.02562 * 18 17 16 20 20 C 1.39000 * 120.00330 * 180.02562 * 19 18 17 21 21 C 1.39337 * 120.09508 * 359.97438 * 20 19 18 22 22 N 1.31920 * 119.89032 * 179.97438 * 21 20 19 23 23 C 1.32275 * 120.08496 * 359.97438 * 22 21 20 24 24 C 1.38153 * 120.19527 * 0.27738 * 23 22 21 25 25 N 1.32257 * 120.10712 * 359.43323 * 24 23 22 26 26 H 1.08997 * 109.47043 * 60.00334 * 1 2 3 27 27 H 1.09007 * 109.46495 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47003 * 299.99621 * 1 2 3 29 29 H 1.09000 * 109.46902 * 239.99614 * 2 1 3 30 30 H 1.08997 * 109.47079 * 120.00221 * 2 1 3 31 31 H 1.09004 * 109.46644 * 40.12534 * 4 3 2 32 32 H 1.08999 * 109.47383 * 160.12013 * 4 3 2 33 33 H 0.97005 * 119.99855 * 180.02562 * 8 7 5 34 34 H 0.97002 * 119.99715 * 245.44610 * 16 13 3 35 35 H 1.09006 * 109.46801 * 45.62749 * 17 16 13 36 36 H 1.09000 * 109.47242 * 285.63558 * 17 16 13 37 37 H 1.08998 * 109.47497 * 59.99719 * 18 17 16 38 38 H 1.09004 * 109.47062 * 299.99766 * 18 17 16 39 39 H 0.97008 * 120.00024 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.05262 * 359.96097 * 21 20 19 41 41 H 1.08002 * 119.89716 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.94790 * 179.69828 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4376 1.6935 -1.9435 6 1 4.0488 0.9135 -1.5139 7 6 3.8279 2.3094 -3.1137 8 7 3.0834 3.2588 -3.6371 9 14 5.4141 1.7952 -3.9558 10 1 6.0629 0.7139 -3.1715 11 1 5.1111 1.3008 -5.3229 12 1 6.3290 2.9616 -4.0426 13 16 2.4122 2.1202 1.4287 14 8 1.5767 1.5429 2.4227 15 8 2.4519 3.5152 1.1612 16 7 3.9618 1.6713 1.8019 17 6 5.0730 2.0926 0.9452 18 6 6.3966 1.8668 1.6787 19 7 7.5077 2.2887 0.8222 20 6 8.8167 2.1772 1.2766 21 6 9.0742 1.6650 2.5465 22 7 10.3180 1.5606 2.9735 23 6 11.3195 1.9408 2.1976 24 6 11.0679 2.4540 0.9398 25 7 9.8243 2.5568 0.5018 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3118 1.8787 -1.9110 32 1 2.1834 3.1802 -1.0655 33 1 3.3579 3.6918 -4.4606 34 1 4.1338 1.1293 2.5878 35 1 4.9662 3.1507 0.7058 36 1 5.0636 1.5091 0.0246 37 1 6.5034 0.8088 1.9181 38 1 6.4061 2.4504 2.5992 39 1 7.3301 2.6451 -0.0623 40 1 8.2568 1.3542 3.1804 41 1 12.3366 1.8544 2.5503 42 1 11.8884 2.7678 0.3115 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336912030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = -24.330736 kcal Electronic energy + Delta-G solvation = -26461.320879 eV Core-core repulsion = 22603.483223 eV Total energy + Delta-G solvation = -3857.837656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03088 -37.25554 -36.69998 -36.10226 -35.29466 -34.80076 -33.84262 -32.79399 -30.51014 -29.98934 -27.69231 -26.69741 -24.91708 -23.44796 -23.23366 -22.32871 -21.72773 -19.01021 -18.11242 -17.54377 -17.16314 -16.90278 -16.60680 -16.51739 -15.71740 -15.62511 -15.13659 -14.78266 -14.64108 -14.48936 -14.27384 -13.80312 -13.36224 -13.00055 -12.89794 -12.55354 -12.15518 -12.12166 -11.99809 -11.74252 -11.57752 -11.53504 -11.42913 -11.38178 -11.34734 -11.13876 -11.00159 -10.60806 -10.44405 -10.32372 -10.09200 -9.88458 -9.19904 -9.16482 -8.58842 -8.14311 -8.01533 -6.19977 -4.27454 0.87700 1.16498 1.21483 2.78799 3.17308 3.26778 3.27930 3.51024 3.73344 4.07028 4.27020 4.28483 4.34414 4.45579 4.67184 4.98550 5.04585 5.12013 5.13240 5.14189 5.26203 5.34560 5.38108 5.64494 5.72767 5.81799 5.96402 6.06169 6.09122 6.23968 6.28646 6.59556 6.61987 6.65320 7.12854 7.28597 7.30243 7.36019 7.42519 7.59887 7.76684 7.87555 8.06722 8.77164 9.38828 10.87774 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011024 B = 0.004164 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.226104 B = 6722.018385 C = 8610.398649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.542 4.542 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.281 1.281 13 S 2.787 3.213 14 O -0.997 6.997 15 O -0.976 6.976 16 N -1.128 6.128 17 C 0.107 3.893 18 C 0.118 3.882 19 N -0.707 5.707 20 C 0.364 3.636 21 C -0.014 4.014 22 N -0.404 5.404 23 C -0.033 4.033 24 C 0.108 3.892 25 N -0.506 5.506 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.265 0.735 34 H 0.408 0.592 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.414 0.586 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 -5.091 9.739 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.120 3.880 5 C -0.581 4.581 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.206 1.206 13 S 2.794 3.206 14 O -0.981 6.981 15 O -0.959 6.959 16 N -0.887 5.887 17 C -0.020 4.020 18 C -0.008 4.008 19 N -0.340 5.340 20 C 0.123 3.877 21 C -0.183 4.183 22 N -0.117 5.117 23 C -0.194 4.194 24 C -0.054 4.054 25 N -0.229 5.229 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.240 0.760 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.252 0.748 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.049 -4.308 10.041 13.571 hybrid contribution 1.202 -0.605 -1.003 1.679 sum 9.251 -4.913 9.037 13.834 Atomic orbital electron populations 1.22214 0.96884 1.01381 1.02529 1.20959 0.93728 0.82780 1.02012 1.57717 1.78419 1.23036 1.24071 1.19236 0.97293 0.92577 0.78882 1.21536 1.07356 1.20788 1.08460 0.91814 1.24945 0.97031 0.94708 0.97003 1.69937 1.37791 1.24140 1.20348 0.86623 0.83418 0.78648 0.79823 1.19659 1.20900 1.20647 1.01749 0.72436 0.73709 0.72666 1.93564 1.65062 1.79791 1.59657 1.93587 1.86367 1.30836 1.85153 1.55933 1.24962 1.70007 1.37780 1.21437 0.83884 1.02791 0.93911 1.21654 0.85050 1.00253 0.93846 1.44418 1.00954 1.68289 1.20334 1.19381 0.86643 0.90987 0.90645 1.23074 0.95502 1.05031 0.94688 1.68186 0.99339 1.10282 1.33928 1.23273 0.99272 1.03387 0.93447 1.23458 0.93430 0.93552 0.94914 1.67995 0.99541 1.20318 1.35036 0.92079 0.92421 0.92441 0.90132 0.92172 0.94712 0.92572 0.92528 0.76016 0.89328 0.88619 0.90975 0.90963 0.74837 0.81947 0.81971 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.13 2.12 6.02 -4.04 -0.02 2.09 16 3 N -0.99 -18.75 2.84 -115.67 -0.33 -19.08 16 4 C 0.24 5.60 5.46 -5.20 -0.03 5.57 16 5 C -0.54 -12.98 8.51 -34.44 -0.29 -13.27 16 6 H 0.06 1.44 6.47 -52.49 -0.34 1.11 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.88 -24.15 13.29 55.43 0.74 -23.41 16 9 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 S 2.79 50.38 6.07 -107.50 -0.65 49.72 16 14 O -1.00 -18.81 17.17 -57.17 -0.98 -19.79 16 15 O -0.98 -21.31 16.01 -57.17 -0.92 -22.23 16 16 N -1.13 -15.52 6.06 -10.61 -0.06 -15.58 16 17 C 0.11 1.50 6.33 -4.05 -0.03 1.47 16 18 C 0.12 1.28 5.04 -4.05 -0.02 1.26 16 19 N -0.71 -8.90 5.73 -60.31 -0.35 -9.24 16 20 C 0.36 4.74 7.67 -154.73 -1.19 3.55 16 21 C -0.01 -0.16 10.49 -17.10 -0.18 -0.34 16 22 N -0.40 -4.92 10.49 -12.88 -0.14 -5.06 16 23 C -0.03 -0.34 11.21 -17.39 -0.19 -0.53 16 24 C 0.11 1.12 11.21 -17.40 -0.20 0.93 16 25 N -0.51 -6.83 10.53 -12.24 -0.13 -6.96 16 26 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 29 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 30 H 0.06 0.84 7.78 -51.93 -0.40 0.43 16 31 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.06 1.45 6.77 -51.93 -0.35 1.10 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.41 4.27 8.65 -34.47 -0.30 3.97 16 35 H 0.09 1.40 7.75 -51.93 -0.40 1.00 16 36 H 0.10 1.51 5.86 -51.93 -0.30 1.20 16 37 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 38 H 0.07 0.69 7.94 -51.93 -0.41 0.27 16 39 H 0.41 5.60 8.60 -40.82 -0.35 5.25 16 40 H 0.16 1.56 6.73 -52.49 -0.35 1.20 16 41 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -32.33 366.00 -9.89 -42.23 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.71 Total: 9.17 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.86 Total: 0.15 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -0.27 Total: -79.33 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.90 Total: -42.02 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 50.38 SS G_CDS: -0.65 Total: 49.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.33 -9.89 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336912030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.895 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds